SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3486

Length: 1915 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3486

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana] dbj\|BAC42465.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63399.1\| At4g15450 [Arabidopsis thaliana] gb\|AEE83605.1\| Senescence/dehydration-associated protein-like protein [Ara	-	-	3.0e-13	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	Gene names
Sma3	PHYPADRAFT_14485; PHYPADRAFT_223836;

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Senescence/spartin-associated	IPR009686	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV63

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGGESSMTTVESGLEVPTGSENELLRIKGAQLCLIDGEESVIIQSGDFAFHVIKQSQSPLAAVVALVGDFQWPVGKDSPVIKVGTKKYSFALSGLPVYGLVLPGNTPVEAEQSLEGLLQQYSTFEAHPEVSDGMENSDQTAWLAAQVMPDVPEYWTTVAPKVENISAKIAQKIHSGSSSSSTSSSSSSSAVWSEVELSWSGATTSNGRKDDDDNNNNNTMSSPARKGAPGIAGQTSTRMMKRIQQARRMSAVAKLLSKTLLRGAINADRHVAPLVANLSASSPMTDDFTGMAVASVDAFSKVVEAVETGPRSILDLPTSESLFFEHSQQSRLSPNGPWTLNKSGLRLLLRATAASAVIHVARGIGVSSFSLPQPSQVSDLDSNQSESCVEEKYWMYSGGHDQRSKAIGHFIPTPNSSMSNIIQSSTHRGNLNSPFQQYVSSPKVATGTNSQFNFSLAFDNNSRQAPPQHQNM*

Protein Length: 474

Fln nts: TATCCTCCCCTCTCCTCTCCCCACCTCACATCCCATTTTGATTTCAAGTCTATTATTTATGTTCATGCCTGCATTGGATTGGATCCCACTGGAATGGGATTGGACAATCCTGTAATTTTCAATTTGTTCTTTCCTGGTAGCCGTGTTTGACTTCACTTGTCAAGGTTGTGTGACTGTTAATTGGTTTCCTGGGGCTTCAAGGTTTGAAATCCATGGTATCTGGATTTTTTTATCATGGTTTGTATGAATCCCTAGATACAATTTTTTTTTGATTTGGGTTCAGAAGT_-_ATGGGGGGTGAATCTAGCATGACCACGGTTGAGAGTGGCCTGGAAGTTCCCACTGGAAGCGAGAACGAGCTCTTGAGGATCAAGGGAGCTCAGCTCTGCTTGATTGATGGCGAGGAGAGCGTAATAATTCAGTCTGGGGACTTTGCTTTTCATGTCATAAAGCAAAGCCAGTCTCCCCTTGCAGCTGTGGTGGCCTTGGTTGGAGATTTCCAATGGCCAGTTGGGAAGGACTCCCCTGTTATCAAAGTGGGCACCAAGAAGTACTCGTTTGCCCTGTCTGGGCTTCCAGTCTATGGGTTGGTTCTGCCCGGCAATACACCGGTGGAGGCCGAGCAGAGCTTGGAAGGGCTGTTGCAGCAGTACTCCACCTTTGAAGCCCATCCAGAAGTCTCCGATGGTATGGAGAATTCTGATCAAACAGCCTGGTTAGCAGCTCAGGTAATGCCAGATGTTCCAGAATACTGGACAACAGTGGCACCAAAAGTGGAGAACATAAGTGCCAAAATAGCACAGAAAATCCACAGTGGATCCTCTTCTTCATCTACCTCCTCCTCCTCCTCTTCCTCTGCTGTGTGGAGCGAAGTGGAGCTTTCATGGAGCGGTGCCACCACCAGCAATGGCAGAAAGGACGACGACGACAATAATAATAACAACACAATGTCATCGCCTGCAAGAAAAGGGGCACCAGGAATAGCCGGTCAAACGAGCACCCGCATGATGAAGCGCATCCAACAGGCTCGGCGTATGTCAGCGGTGGCCAAGCTTCTCTCCAAGACCCTTCTCAGAGGCGCAATCAACGCCGACCGCCACGTGGCACCTCTGGTCGCAAACTTGTCTGCCTCGTCACCGATGACCGACGATTTCACGGGCATGGCCGTTGCCAGCGTGGACGCGTTCAGCAAGGTTGTGGAGGCAGTGGAAACAGGTCCCAGAAGCATATTGGACCTCCCCACCTCCGAGTCACTATTCTTCGAGCACAGTCAGCAGTCCCGTCTGTCACCCAACGGTCCGTGGACGCTGAACAAGTCGGGACTCCGCCTCCTCCTGCGAGCCACCGCGGCCTCTGCGGTCATCCACGTGGCACGCGGCATCGGCGTGTCATCGTTCTCGTTGCCACAGCCATCACAGGTGTCGGATCTGGATTCGAACCAGAGCGAGTCTTGCGTGGAGGAAAAGTACTGGATGTATTCTGGCGGCCATGATCAGCGCAGTAAGGCAATTGGGCACTTTATACCTACTCCGAATTCCAGTATGTCAAATATTATTCAGAGCTCCACTCATCGGGGCAACCTGAACAGCCCATTCCAGCAATACGTGAGCAGTCCAAAGGTTGCCACTGGAACCAATTCTCAGTTCAATTTTTCCCTCGCCTTCGATAACAACAGCCGCCAAGCGCCGCCACAGCACCAGAACATGTGACCGCCATGACACTATTAATTCTGAGACATACAGCGGTGGCTTCCCTCAACATGTATTCTCCTCCTCCTGGGGATTAACTATGGAACAGGGGAGGGGATTAAATGTTTGACACCTAATAGGACTTTGCATTGTAATGTTACTTTCTTTCAAAGGACTAGATTTGATTATTAAACCTGTGGCCTTCCTTTCTTTTCCAATAAATAATTCTA

Fln Alignment:

Contig3486___ENELLRIKG-AQLCLID-GEE---SVIIQSGDFAFHVIKQSQSPLAAVVALVGDFQWPVGKDSPVIKVGTKKYSFAL-------------SGLPVYGLVLPGNTPVEAEQSLEGLLQQYSTFEAHPEVSDGMENSDQ-TAWLAAQVMPDVPEYWTTVAPKVENISAKIAQKIHXXXXXXXXXXXXXXXXXXXXXXXXXXGATTSNGRKXXXXXXXXXTMSSPARKGAPGIAGQTSTRMMKRIQQARRMSAVAKLLSKTLLRGAINADRHVAPLVANLSASSPMTDDFTG-MAVASVDAFSKVVEAVETGPRSIL
A9NV63______________EETLVRIPGGAVVNLVDAGEEVSDSAQLGSGEFSIVRIVQGNTGIVLFVNVGEDVRWPLTKDEPTLKLDSRHYLFSIRLPPDEEAADKDSSDILNYGVTFADE---EGLDSLDSFLQQHACLSLPAESTGGASKSTRATKWGSCDRENPEAAYWTALAPRVENYNSVVAKAI---AAGSGQIIKGLFLCTNAYDSQLQKGGESVRGR---VTKAESKTGAAADHQKKTSSHAKISPSTKRNIRRAKKLSRMTEKLSENLLAGVVTVSGGVTAPVVGSKAGQKFFRMLPGDVLLASLDAFNKVLDAAEIVGRDAL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
477	14		85	0.993533
1234		81	18	0.999994
1713	83	16		0.999991

SSRs (tot: 2)

Start position	End position	Sequence	Length
832	847	CCT CCT CCT CCT CCT C	16
915	926	GAC GAC GAC GAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain