SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3456

Length: 1758 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3456 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hyccin multi-domain protein	-	-	0.0	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Source	Gene names
Sma3	At5g64090; GSVIVT00017402001; GSVIVT00026433001; GSVIVT00031610001; LOC_Os11g06860; Os11g0169600; OsI_35268; POPTRDRAFT_1067424; POPTRDRAFT_553442; RCOM_0513690; VITISV_022132;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Hyccin	IPR018619	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298179.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR52

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 412 - 436

Fln protein: MQCRPGGKELPEPRSAIDSLDSIVGPLQSTESLKESDRPARGLLDSQEVVYAVSSALHSASSGSASDRLCRWLYDTFLSSDADLQLVVLRYIPLVVGIYFSRLVSGIHSLHEPLAGFEAVLLVLYTSEVKSRGGKPLLVHVPDLAEPSLYHAPRIPLQRDFCPMPSIGKLSDPLEPQDAIKSTKRASIVGVVLDLFYRKISLMPAGAKVDFCHFVQGWAGQNCVCARRFDDQVHKRPLADLFDSNFEEEEDEIAENYNSPTTTNTERALIDEIGKFSIHDDTASTNDNPVRHDHDTSFSSSDGQMDDCSEKSARIPLPWELLQPILRILGHCLLAPLNPQEVRDAASSATRALFARASHDLVPEAILATGSLIKLDIATRATAMATAAANAVSSAYTPTKSKKPLNLLVSR*

Protein Length: 413

Fln nts: ATGGGGAGGCCGTTACGACGTCAAAATGACTCTAACACATTGTATAGTTTACAGAAGCTTTCCAGAGAGCCAGTGTGGCAGTCTCGATTCCAAGAGATCCACCTGTTTACCCAGTCAGAGGCATGGCTCATAAGAAGCCTTCCCCCGCAGAATCTGTTCTTGAGAGTCCCAACTCCTTGCAGGGGATGACGATGGCCATGGAGATGTCAGGGGGCAGAGCGAGCTTTGGGTCAGGAATGGGAGAGGGATCGTCATCCTTGCAGGGTGGTGGAGGGA_-_ATGCAATGCAGGCCTGGTGGGAAGGAATTGCCAGAGCCCCGCTCTGCAATCGACTCTCTTGACTCCATTGTCGGTCCTCTGCAATCAACAGAGTCGCTCAAGGAATCCGACAGGCCCGCCAGAGGCCTCCTCGACAGTCAGGAGGTCGTGTACGCCGTCTCCTCTGCACTCCACTCGGCCTCCTCTGGCTCCGCCTCCGACCGCCTCTGCCGTTGGCTCTACGACACCTTCCTCTCCTCCGACGCTGACTTGCAGCTCGTTGTTCTCAGGTACATTCCCCTCGTTGTCGGAATCTATTTCTCCCGTCTTGTATCCGGCATCCACTCCCTCCACGAGCCCCTTGCCGGATTCGAGGCCGTCCTGCTGGTTCTCTACACCAGTGAAGTCAAGAGCAGAGGTGGCAAGCCTCTGCTTGTCCACGTTCCCGACCTAGCCGAGCCCTCTCTCTACCATGCCCCCCGCATTCCCCTTCAACGTGATTTCTGTCCCATGCCTTCTATCGGGAAGCTCTCCGACCCCCTGGAGCCTCAGGACGCAATCAAATCCACGAAGAGGGCATCCATTGTCGGGGTCGTCCTCGATCTCTTCTACAGGAAGATTTCCCTCATGCCTGCCGGGGCCAAGGTCGACTTTTGCCACTTTGTTCAAGGTTGGGCTGGTCAAAATTGCGTCTGTGCCCGTAGATTTGATGATCAGGTCCACAAACGGCCGCTGGCAGACTTGTTCGATTCTAATTTCGAGGAGGAGGAGGATGAAATTGCAGAGAATTATAATAGCCCTACTACAACTAACACTGAAAGAGCCCTGATTGATGAAATAGGCAAATTCAGTATCCATGATGACACTGCTTCTACGAATGACAACCCTGTAAGGCATGATCATGATACTAGCTTCTCCTCATCAGATGGGCAGATGGATGATTGCAGCGAAAAGAGTGCAAGAATTCCCCTCCCTTGGGAACTTCTGCAGCCCATTCTGAGGATCCTGGGACACTGCCTTCTGGCTCCTCTCAACCCACAGGAAGTCAGGGACGCCGCTTCGTCTGCAACGCGGGCACTTTTCGCTAGAGCCTCGCATGATCTAGTCCCTGAAGCAATTCTGGCCACCGGTAGTCTTATAAAGTTGGACATAGCTACCCGGGCGACAGCAATGGCCACTGCAGCCGCCAATGCTGTCAGCAGCGCTTACACTCCAACCAAATCCAAGAAGCCTCTGAACCTTCTGGTATCTAGATGAGGTCTGGTGTACTCTTGGCTTATTCGTGTCACTTCCATCTTATAGTTCCATTCAGCAGAAAATTGTACTTTCAAGTACTTGTTGAGCTTTCTGTAAAATGTATCATTCTGTTTTAATATAATTTATTTTTATGGACGAATATCATACCTCATCTTGTAATGGCATTCATGTGTATCTATTTTTGCAATATAGACTTGTAAGAATAGACGAAAAACAATGAATGCAAGCTTTTTAGTGGTTTTAGTA

Fln Alignment:

Contig3456___RSAIDSLDSIVGPLQSTESLKESDRPARGLLDSQEVVYXXXXXXXXXXXXXXSDRLCRWLYDTFLSSDADLQLVVLRYIPLVVGIYFSRLVSGIHSLHEPLAGFEAVLLVLYTSEVKSRGGKPLLVHVPDLAEPSLYHAPRIPLQRDFCPMPSIGKLSDPLEPQDAIKSTKRASIVGVVLDLFYRKISLMPAGAKVDFCHFVQGWAGQNCVCARRFDDQVHKRPLADLFDSNFXXXXXXXXENYNSPTTTNTERALIDEIGKFSIHDDTASTNDNPVRHDHDTSFSSSDGQMDDCSEKSARIPLPWELLQPILRILGHCLLAPLNPQEVRDAASSATRALFARASHDLVPEAILATGSLIKLDIXXXXXXXXXXXXXXXXXXXTPTKSKKPLNLLVSR
B8LR52______________RAAIDSLDSIVGPLQSAESLKESDRPARGLLDSQEVAQAVSAAFQSASSGSASDRLCHWLYDTFLSSDPDLQLVVLRYVPILAGIYLSRLVSDTHSLREPLAGFEAVLLALYSGEVKARGGRPLLLHIPDLAQPSLYHAPRNPLPHDLSPNPFVGQLSAPLEPQAAVKSTKRASIVGVALDLFYRKVAVMPAGPKIDMCHFVQGWAGQNCSCARRFDDQIHEGPQADLSVSNCQEGEEI------AENISPVDRALIDGITKFSIHDDIASANGSPARYHHQDSFSSSDGPMDDCSIKGARIPLPWELLQPILRILGHCLLAPLNPQEVKDAASSAARVLFARVSHDLVPEAILATRSLIRLDISTRANAMAAAAANAASNTNTPTKHKKPEVFLASR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
767	33		66		0.997452
1039	83	16			0.994512
1040		16	83		0.994512
1041	83	16			0.994512
1042		16	83		0.994512
1044			83	16	0.994512
1189			20	80	0.995493
1303	12		87		0.992554
1375	12			87	0.992554
1376		87		12	0.992554
1434		42	57		1.0
1436	14			85	0.993533
1459		33		66	0.997452
1561		66		33	1.0
1572		16		83	0.994512
1600	60	40			1.0
1601	60	40			1.0
1602		40	60		1.0
1603	60	40			1.0
1605		60		40	1.0
1690		25		75	0.996473
1691		25	75		0.996473
1692		25	75		0.996473
1693	25	75			0.996473
1695		75	25		0.996473
1697	25	75			0.996473
1718		33		66	0.997452
1719	66	33			0.997452
1721	66	33			0.997452
1725		33		33	0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
731	744	TCC TCC TCC TCC TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain