SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3445

Length: 1845 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3445

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB multi-domain protein	-	-	7.0e-26	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%

Source	Gene names
Sma3	ABAP1; At5g13060; At5g19330; CHLREDRAFT_140706; GSVIVT00019943001; GSVIVT00019944001; GSVIVT00023713001; MICPUCDRAFT_29724; MICPUN_66240; OSTLU_27814; Os05g0398100; OsI_19876; OsJ_18462; P0605G01.6; PHYPADRAFT_106476; PHYPADRAFT_106616; POPTRDRAFT_1085349

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA replication preinitiation complex	GO:0031261	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	-
Sma3	DNA-dependent DNA replication	GO:0006261	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19330.1	ARIA ARM repeat protein interacting with ABF2 chr5:6508095-6512701 REVERSE LENGTH=710	68%
RefSeq	Arabidopsis thaliana	NP_850852.1	ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002312519.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 453 - 390

Fln protein: MLRSESVSIHSEAVGVIGNLVHSSANIKREVILAGALQPVIGLLSSRCPQSQKEAALLLGQFATTDTECKVHIVQRGAVRPLIKMLYASDTQLRSMAAFALGRLAQNTHNQAGIVHDGGLAPLLELLDSRDGSLQHNAAFAIYGLADNEDNVYDIVKSGAIERLQDGELIDQQSKDCAAKTLKRLEENINGRVLKHLLYLMRQLDRIFQRRIALALAHLCSLNDLRMVFIDYNGLDVLLGLLGRTANPKHRRDGVFALLALAKKACPSPMVAASLPPRPQVYLGEQFVNNETLSDVRFVIEGRRFYAHRIALLASSDAFRAMFDGGYKEKEAKDIEIPNISWRVFELMMRFLYTGTVEVTSEIAQDLLRAADQYLLEGLKRLCELCLAEDITVENVADVFDLAEAHHAILLEDTCALFILERHEQLCTVAGYSVLIERIIPTVRDYMQRILP*

Protein Length: 454

Fln nts: TGCGCACCCTTGCATTTAAAAACGAGTCAAACAAGAATCAGATAGTGGAGTGTAATGCCCTTCCCATCTTAATTTTA_-_ATGCTGCGATCTGAATCTGTCAGCATTCACTCTGAAGCAGTAGGTGTTATTGGAAATCTGGTGCATTCTTCTGCAAACATAAAGAGAGAGGTTATTCTTGCTGGAGCCCTTCAACCAGTTATTGGACTCTTGAGTTCAAGGTGTCCACAAAGCCAAAAAGAGGCTGCGCTGTTGTTGGGTCAATTTGCCACAACTGATACAGAATGCAAGGTTCACATAGTGCAACGAGGTGCAGTACGGCCTCTAATTAAAATGCTTTATGCCTCAGATACTCAGCTCAGGTCTATGGCTGCTTTTGCTCTTGGCAGACTAGCACAGAACACACACAACCAAGCTGGCATAGTTCATGATGGAGGACTGGCACCATTGCTAGAACTTCTTGACTCAAGAGATGGATCCCTTCAGCACAATGCTGCCTTCGCTATATATGGTCTTGCAGATAATGAGGATAATGTGTATGACATTGTGAAAAGTGGTGCCATTGAAAGATTACAGGACGGAGAATTGATTGATCAGCAATCAAAGGATTGTGCAGCAAAAACCCTAAAAAGGTTGGAAGAGAATATTAATGGAAGGGTTTTGAAGCATTTACTTTATCTGATGCGTCAACTAGATAGAATTTTCCAAAGACGAATTGCTTTGGCCCTTGCCCATCTTTGTTCTTTGAATGATCTAAGGATGGTCTTCATTGATTACAATGGCTTGGATGTGCTACTGGGGCTTCTTGGCCGTACTGCAAACCCAAAGCACCGACGAGATGGTGTCTTTGCATTGCTTGCATTAGCCAAAAAGGCATGTCCATCTCCTATGGTTGCTGCATCACTTCCTCCTCGTCCTCAGGTATACTTGGGGGAACAGTTTGTGAACAATGAGACTTTATCAGATGTTCGTTTTGTTATTGAAGGCAGACGATTTTATGCTCATAGAATTGCACTTCTTGCATCATCAGATGCATTTCGTGCTATGTTTGATGGTGGCTACAAGGAAAAGGAGGCAAAAGATATCGAAATCCCAAACATAAGCTGGAGAGTATTTGAACTAATGATGAGATTTCTCTACACAGGTACAGTAGAGGTGACATCAGAAATTGCACAGGATCTTCTTAGGGCTGCTGACCAGTATCTGTTAGAAGGACTAAAGCGCTTGTGCGAATTGTGTCTTGCTGAGGACATTACTGTCGAGAATGTTGCCGATGTTTTTGATTTAGCTGAGGCTCACCATGCAATTTTATTGGAGGATACCTGTGCTTTATTCATTTTAGAACGGCATGAACAGTTGTGCACGGTAGCTGGGTATTCAGTTTTGATTGAGAGAATCATTCCAACTGTACGCGATTACATGCAACGAATTCTACCCTAACAGCACACATTTTTACACCTTAACTGTACAAGATATTGTCAAAATTTCAATTTGAAAATTTATAGGAGACTTTGTAGTTTTATCATCTATTCAAATTTGTACAGATGTCTGAGCATTCCTACATGCGGTGATTAAGTACAGCATAACTAAAGGTGGCAAATTATCCACAGTGGCTGTTCTTAGTCATAAAAGAGGTTCTCTTTGCACATTGAGCTTCACATGGTCTTCTGGTGGGCTTTTCTGTTTCTGACCTCTTCTGTTTCGAAATAGATTCAGTGGTGGTGGTGTGCAAATCCATTAAAAAGCTAAAATATTGATTAAGGGGGGAAATGACTAGCAGTCATTCCTATACACATTTATCTGTAACTTTTGTTCCTTTTGATGGTTGTAATTATGTTTTAACTTTTCA

Fln Alignment:

Contig3445___PQVYLGEQF---VNNETLSDVRFVIEGRRFYAHRIALLASSDAFRAMFDGGYKEKEAKDIEIPNISWRVFELMMRFLYTGTVEVTSEIA-------------------QDLLRAADQYLLEGLKRLCELCLAEDITVENVADVFDLAEAHHAILLEDTCALFILERHEQLCTVAGYSVLIE
B8LMS2______________PESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFGSSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
525		16	83		0.994512
528	80			20	0.995493
1642	90	10			0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
1712	1723	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain