SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3416

Length: 2579 nt

UniGene Fasta

>sp_v3.0_unigene3416
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGACGATAAATTCATTCAGTGGTACAATCACGGTAGCGAGCAGAAGCAACAGCAGAATTGCAGATCTCCTGACCAACTTTGCCGTCTTTGGCGGAATTTCACAGCAACAGCAGCTGTTAACAATGGAGATTGGGAGCTACCCATTGTCAATCAATCAGACATATCCCATGCCTTTTTCACAAAATTAATACAATCATCACCGTCTCCTCCGCAGAAAGGTTCCTCTGCATAAACCGGCACTGTGTATTGTTTCTGGCTCTCCCATCTTACTATTAACGTGCAGAGAAATCTGAGTTGGGCAGGCAGCGAGGTGCCTAAATAAATGTTTTGATCGAGGAAGTAAAGTAGTAGCCAGGGCGGGCTAACAATGTACAGAAGAGTGGTGGGTTTGGCCTTATCAGGGCTGCTGTTGGTTATCTGTTCTGAGATAGTTCATGGGTCGATTCACGACTACACCGATGATGCCTTCTTGCCACAAGGGAATGGATTCCTTTTCTATGGGGGTAGTGAGGGCCTTTATGCTTCTTTGAATACAGACAATAGGACTGGCATTGACAATGGGAAGTCATTCATCAAGTTTGATTCAATCACTTTACGCAGGACTCAGGAATCTGCTTCTAAGCATGATGAAATGGAGCATAGCACTGGGTTTATTGAAGCAGTTATTTTCGAGACAAAGGATAGGTACAAGATTAGTGGCAATCCATATGATGGGGCCACTGCACTATGCTGTACTCCAGACCTTGCCAAGTTAGAAGGCTGTAAACAAGGGGAGATCATTGTACACCGATCTGCTGATGAGCCAAACTGGCCTCGCTCCATTCCCTTTGTCTTCCAGGGGAATAATTCAGAAGCAAAGGCACAGCCAGACACCATCTATATCACAAAGTCTGGCATGTACAATATTTATTTTATTTTCTGCGATCCACAACTGAAAGGCACTATTATCAATGGCAGAACTGTGTGGAAGAATCCAACAGGCTATTTGCCAGGCAGGTTAGCACCTTTATTGAAATTCTATGGGTTTTTGTCTTTAGCCTACCTTATTCTTGGACTTATCTGGTTTCTGCAATACGTGCGTTTCGGGGATGATATATTACAGCTTCAAAACTGCATAACAGCAGTGATATCCCTTGGAATGCTTGAGATGACCTTGTGGTATTTCGAATATGCCAATTTTAATGCAACTGGGCGTAGACCAATGAGTATCACTACCTGGGCAATCACTTTTATGGCTATTAAGAAGACTGTCTCTCGGCTTCTCCTTCTTGTGGTTTCTATGGGTTATGGTGTGGTGCGACCTACTCTCGGGGGAATTACATCAAAAGTGGTTCTTCTTGGAGCAATCTACTTTGTGGCTTCAGAGGCATTGGAGCTTGTAGAAAATGTTGGGAATATAAATGATGTTTCTGGAAGAGCAAGGACTTTCCTTGTATTACCTGTCACTGTTCTTGATACTTTCTTTATCGTATGGATCTTCACTTCCTTGACAAAAACTTTGGAAAAGCTACATGCACGGAGAAGCTTTGCCAAGCTGAATCTTTATAGAAGGTTTACAAACTCCTTAGCACTAGCTGTGGTCCTCTCTTTTGCTTTGATTTGCTATGAGCTGTATTTCAGGGTAGCAGATCCCTTTGGTGAGGATTGGCAAACTGCTTGGATTATTACAGCTTTCTGGAACTCACTTTCATTCATACTGCTTTGTATAATTTGTTTATTGTGGGCACCATCGCAGAATGCTACCCGGTATGCCTTCTCTGAGGAGATTGGAGACGAATTTGATGGAGAAGAGGTCATTGCCTTAACGAGCATAAGTGCAAAGTCAACAATGGATGATTCTAGCAAACAAGATATGAAAGAAAGGCATACTGTCAACACAGATGTTTTCAGTCTTGGAGAAGATATTGCAGAGGACAAAAGAGAATGAGTGCACACAGATGTTTTCAGTCTTGGAGAAGATATTGCAGAGGACAAAAGAGAATGAGTGCTGGACTCGGTCATTCTTTTCAAATTCCGAATTGCATTGGATCGGCCATTCAGAGGGCTTTCTCTGAACTCTTGTCAAATTGAATTTTCTCTGAATCCGGTAAAATTTAAATTTTCTTGTACTGTGGTGATTCGGTGAATGTGTTTAAAAATTGAACCCTTCCCAGATTGTAATGATACATTCAAAGTACCGATTAGTAGAACTTTACTCATTTCTTGAATATAACGATTCTGCTGTTTGAAGCCAAATTGTTTTTATGACTCAGAGGCTCAAGAAGGCAAAGAGCAATCAGAGTTTGTACATTTTTTTTCATAATTCATCCTCTCAACTGTTAAGCATGTCGGTACAATATACGCATGCATGGAATTCACGGAACTTATCACCAGTGAGGAGAAATTATGTAATAAGACATTTCGTTCTATCTTCAACTGTTAATAATGTTAAGATCAAAATTTTGCTTTCTTGCCTCAGAGCTATAAGACATGTCGTTCATATAACCTTTCTGTTCAATATTCAATTCCTAATAATATTAAGATTAAAATTTTGCATTC

Ace file of the UniGene sp_v3.0_unigene3416

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lung seven transmembrane receptor family protein [Arabidopsis thaliana] dbj\|BAC42366.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33872.1\| Lung seven transmembrane receptor family protein [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Ptm1, putative	-	-	5.199e-13	-

Source	Gene names
Sma3	At1g10980; At1g61670; At1g61670/T13M11_2; At1g72480; At2g01070; GSVIVT00001658001; GSVIVT00010017001; GSVIVT00026589001; GSVIVT00029462001; GSVIVT00034052001; GSVIVT00037499001; LOC_Os03g21690; LOC_Os11g34360; MICPUN_88500; MtrDRAFT_AC157375g29v1; OJ1344_

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transmembrane receptor, eukaryota	IPR009637	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G61670.1	Lung seven transmembrane receptor family protein chr1:22770132-22772258 FORWARD LENGTH=513	55%
RefSeq	Arabidopsis thaliana	NP_176360.2	Lung seven transmembrane receptor family protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002309185.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRU5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MYRRVVGLALSGLLLVICSEIVHGSIHDYTDDAFLPQGNGFLFYGGSEGLYASLNTDNRTGIDNGKSFIKFDSITLRRTQESASKHDEMEHSTGFIEAVIFETKDRYKISGNPYDGATALCCTPDLAKLEGCKQGEIIVHRSADEPNWPRSIPFVFQGNNSEAKAQPDTIYITKSGMYNIYFIFCDPQLKGTIINGRTVWKNPTGYLPGRLAPLLKFYGFLSLAYLILGLIWFLQYVRFGDDILQLQNCITAVISLGMLEMTLWYFEYANFNATGRRPMSITTWAITFMAIKKTVSRLLLLVVSMGYGVVRPTLGGITSKVVLLGAIYFVASEALELVENVGNINDVSGRARTFLVLPVTVLDTFFIVWIFTSLTKTLEKLHARRSFAKLNLYRRFTNSLALAVVLSFALICYELYFRVADPFGEDWQTAWIITAFWNSLSFILLCIICLLWAPSQNATRYAFSEEIGDEFDGEEVIALTSISAKSTMDDSSKQDMKERHTVNTDVFSLGEDIAEDKRE*

Protein Length: 521

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGACGATAAATTCATTCAGTGGTACAATCACGGTAGCGAGCAGAAGCAACAGCAGAATTGCAGATCTCCTGACCAACTTTGCCGTCTTTGGCGGAATTTCACAGCAACAGCAGCTGTTAACAATGGAGATTGGGAGCTACCCATTGTCAATCAATCAGACATATCCCATGCCTTTTTCACAAAATTAATACAATCATCACCGTCTCCTCCGCAGAAAGGTTCCTCTGCATAAACCGGCACTGTGTATTGTTTCTGGCTCTCCCATCTTACTATTAACGTGCAGAGAAATCTGAGTTGGGCAGGCAGCGAGGTGCCTAAATAAATGTTTTGATCGAGGAAGTAAAGTAGTAGCCAGGGCGGGCTAACA_-_ATGTACAGAAGAGTGGTGGGTTTGGCCTTATCAGGGCTGCTGTTGGTTATCTGTTCTGAGATAGTTCATGGGTCGATTCACGACTACACCGATGATGCCTTCTTGCCACAAGGGAATGGATTCCTTTTCTATGGGGGTAGTGAGGGCCTTTATGCTTCTTTGAATACAGACAATAGGACTGGCATTGACAATGGGAAGTCATTCATCAAGTTTGATTCAATCACTTTACGCAGGACTCAGGAATCTGCTTCTAAGCATGATGAAATGGAGCATAGCACTGGGTTTATTGAAGCAGTTATTTTCGAGACAAAGGATAGGTACAAGATTAGTGGCAATCCATATGATGGGGCCACTGCACTATGCTGTACTCCAGACCTTGCCAAGTTAGAAGGCTGTAAACAAGGGGAGATCATTGTACACCGATCTGCTGATGAGCCAAACTGGCCTCGCTCCATTCCCTTTGTCTTCCAGGGGAATAATTCAGAAGCAAAGGCACAGCCAGACACCATCTATATCACAAAGTCTGGCATGTACAATATTTATTTTATTTTCTGCGATCCACAACTGAAAGGCACTATTATCAATGGCAGAACTGTGTGGAAGAATCCAACAGGCTATTTGCCAGGCAGGTTAGCACCTTTATTGAAATTCTATGGGTTTTTGTCTTTAGCCTACCTTATTCTTGGACTTATCTGGTTTCTGCAATACGTGCGTTTCGGGGATGATATATTACAGCTTCAAAACTGCATAACAGCAGTGATATCCCTTGGAATGCTTGAGATGACCTTGTGGTATTTCGAATATGCCAATTTTAATGCAACTGGGCGTAGACCAATGAGTATCACTACCTGGGCAATCACTTTTATGGCTATTAAGAAGACTGTCTCTCGGCTTCTCCTTCTTGTGGTTTCTATGGGTTATGGTGTGGTGCGACCTACTCTCGGGGGAATTACATCAAAAGTGGTTCTTCTTGGAGCAATCTACTTTGTGGCTTCAGAGGCATTGGAGCTTGTAGAAAATGTTGGGAATATAAATGATGTTTCTGGAAGAGCAAGGACTTTCCTTGTATTACCTGTCACTGTTCTTGATACTTTCTTTATCGTATGGATCTTCACTTCCTTGACAAAAACTTTGGAAAAGCTACATGCACGGAGAAGCTTTGCCAAGCTGAATCTTTATAGAAGGTTTACAAACTCCTTAGCACTAGCTGTGGTCCTCTCTTTTGCTTTGATTTGCTATGAGCTGTATTTCAGGGTAGCAGATCCCTTTGGTGAGGATTGGCAAACTGCTTGGATTATTACAGCTTTCTGGAACTCACTTTCATTCATACTGCTTTGTATAATTTGTTTATTGTGGGCACCATCGCAGAATGCTACCCGGTATGCCTTCTCTGAGGAGATTGGAGACGAATTTGATGGAGAAGAGGTCATTGCCTTAACGAGCATAAGTGCAAAGTCAACAATGGATGATTCTAGCAAACAAGATATGAAAGAAAGGCATACTGTCAACACAGATGTTTTCAGTCTTGGAGAAGATATTGCAGAGGACAAAAGAGAATGAGTGCACACAGATGTTTTCAGTCTTGGAGAAGATATTGCAGAGGACAAAAGAGAATGAGTGCTGGACTCGGTCATTCTTTTCAAATTCCGAATTGCATTGGATCGGCCATTCAGAGGGCTTTCTCTGAACTCTTGTCAAATTGAATTTTCTCTGAATCCGGTAAAATTTAAATTTTCTTGTACTGTGGTGATTCGGTGAATGTGTTTAAAAATTGAACCCTTCCCAGATTGTAATGATACATTCAAAGTACCGATTAGTAGAACTTTACTCATTTCTTGAATATAACGATTCTGCTGTTTGAAGCCAAATTGTTTTTATGACTCAGAGGCTCAAGAAGGCAAAGAGCAATCAGAGTTTGTACATTTTTTTTCATAATTCATCCTCTCAACTGTTAAGCATGTCGGTACAATATACGCATGCATGGAATTCACGGAACTTATCACCAGTGAGGAGAAATTATGTAATAAGACATTTCGTTCTATCTTCAACTGTTAATAATGTTAAGATCAAAATTTTGCTTTCTTGCCTCAGAGCTATAAGACATGTCGTTCATATAACCTTTCTGTTCAATATTCAATTCCTAATAATATTAAGATTAAAATTTTGCATTC

Fln Alignment:

Contig3416___VHGSIHDYTDDAFLPQGNGFLFYGGSEGLYASLNTDNR--TGIDNGKSFIKFDSITLRRTQESASKHDEMEHSTGFIEAVIFETKDRYKISGNPYDGATALCCTPDLAKLEGCKQGEIIVHRSADEPNWPRSIPFVFQGNNSEAKAQPDTIYITKSGMYNIYFIFCDPQLKGTIINGRTVWKNPTGYLPGRLAPLLKFYGFLSLAYLILGLIWFLQYVRFGDDILQLQNCITAVISLGMLEMTLWYFEYANFNATGRRPMSITTWAITFMAIKKTVSRLLLLVVSMGYGVVRPTLGGITSKVVLLGAIYFVASEALELVENVGNINDVSGRARTFLVLPVTVLDTFFIVWIFTSLTKTLEKLHARRSFAKLNLYRRFTNXXXXXXXXXXXXICYELYFRVADPFGEDWQTAWIITAFWNSLSFXXXXXXXXXWAPSQNATRYAFSEEIGDEFDGEEVIALTSISAKSTMDDSSKQDMKERHTVNTDVFSLGEDIAEDKRE
C0PRU5______________VEGSVHEYKDASFKESGDAYLLYGGNEGMRASIDSDQKHGSGPNNGKSYIKFENITLRRTREAAAQHSGMEHRTGLVQAIIFEASDRDDIGGSLYGGRKAICCTPDLAKMEGCKQGEVIRRQSAGDPKWPHVLNIEFSGDDIATTMSAQSVTIPKTGMYNLYFIFCEPTLKGLLLDGKTIWKNPTGYLPGRMAPLMTFYGFMSLVYLLLGVIWFSQYIRFWKDVLQLQNCITLVIALGMFEMTLWYFEYANFNATGIRPMGITFWAVTFGAVKKTVARLLLLVVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDVVENVGTIDDLSGNTRLFLVLPVAILDAFLILWIFTSLSKTLEKLQARRRLAKLEIYRKFTNALAVAVIVSVAWIGYELYFKATDPFSERWQSAWIITGFWHMLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDEEEALALT--TSTSVVDVDVKQEMKERKAVNTDVFSLDEDTEEDKRE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1130	75		25		0.996473
1133	50		50		1.0
1134			50	50	1.0
1301		12		87	0.992554
1368	90			10	0.90298
1389	20	80			0.999996
1556	10	90			0.90298
1557	90	10			0.90298
1558		90		10	0.90298
1561	90			10	0.90298
1567			10	90	0.90298
1568	10			90	0.90298
1582	12	87			0.992554
1661			85	14	0.993533
1665	85		14		0.993533
1703		14		85	0.993533
1735	87		12		0.992554
1737	87	12			0.992554
1738		87	12		0.992554
1744			12	87	0.992554
1747	87		12		0.992554
1750	87	12			0.992554
1752		12		87	0.992554
1753	12			87	0.992554
1858	14		85		0.993533
1861	85			14	0.993533
1862	85			14	0.993533
1871		66		33	1.0
2363	23		76		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain