SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3403

Length: 1968 nt

UniGene Fasta

>sp_v3.0_unigene3403
GTCGGAGTGGAAGCATCTGAAATGGCATACGCTGCGTGCTGGTTGCATGCTTCTTGATCGCCCTTTTTCATATTCTGAAAGCCGCTGGTTACCTTTACACTACTTTAAAGCAAAGCCCAAAGCTGACAAAAGATTTCCTTCATATGAGTCTCTGATCACCCGGAAATGCAAGGGATTTCTGCAAATTCTCACGTATCATGTAATTCCTGCAATCGAGTATTGGGGTTCATCACAACGAAGGCTGTCCTGGCCGGTTTTATCTACTGCAATGAATGCCAATCCCAAGGGAAGCTCCACTCCTTGCATGCCTTCAGGAGGTCTTGGGACCCAGACATCTTCTGTCCACCTTTTCCTGATTTCTACCTAGAGGGAAGCGACGGAGGAATTGTCAGGGCACATAAGGCCGTACTGGCGGGCAAGTGCAAAGTATTCAAAGCCATGCTCACGGCAGGCATGGCCGAATGCAGCCTGGATAAAGTGAAAATTCTAGACATGACAGCTCAAGAATTGCAGGCATTAGTGGACTTTCTATACAAGGGCATGGTCTCCCAAAGAAGCCTGGAAAAGCATTCCGTTGCTCTCTACAAGGCCTCACACAAGTATGACTTACCTTCATTGACAAAGCTTTCTGAACGGTTTCTGCAATCTAATGTCTTCAGGGATATTCCGGGTGCTATTGAGGTTGCAATTATCCATGATTCAAAAACATTGCAAAAGGCTGTGTTGCCTTATATTTTCAACGAGGGTTTTGTCCAAAGCAATTCCCCTTCATTTGTAGTAAAAACCCTCAGGGAGGCTTTTATGTTTGATGACTATGAAGAATACAGAGAGGATCATGGCAACGAGATTCCTTGGCTCATGGAGAAGGCTATACAACGGATAGCATGCCAAATTGTGCTCGAAGACATGGAGGGCGCTCGACAAACGGATACCATACAGGGTACAGGAGAGAGGGATGATGCTGAAACCTCTGTTCACCAGCATAACAATGTGCATCTTGATGGGAAACTCTGCAAACCAGGAATAGTTGAAACAAACCTCACAGTTCCTGCTCCAGATTCTCAGCCTAAAAGTTGTACGCTTGGAAATGCAATCAGTGCTGCAGAGAGGGGAGGTGGCAGGGCTCTTTTTAAAAGCTCTCGTGGTTCTAGACGAAGGAAGAGTCGCCAAGGGAAGCATGCTGAGATAGAAGCTCACGATGCAGAAGCTATGCAGACAAATTAAATACCATGTTTTGTGATCAAATTAAACTAATTTATCACATTGGTATGTAGAGGACTTAATCATGTGGATAGAAAATGTCTAGGGTCTAGAATGAATCTGTGTGAGAATCTATGCAAGGCCGACCATATTTGAATTCTATTGTTGAAGAGATTTCTCGTTATACCACCAAGTTGTGTAGCAGCTATGAGTCTTTTAATTTGATATTCACATTGTTTTCATTATGGACAAATCTACATACCCATATTTTCTTTGACTGTCTCTGACTTGATGCAGCATCCACTGTAGAAATTTTGGTACGAGTTGTAAGTTGTATCAGTTCAGCAAAGCTACTTCCATATAGCTTAAAATGCACTTTATGAGCCGAATCGTGAAATTATCTGAACAAATTAGTTGGTTAATGTTGGGAGGTGCAAAGAGTCCCCCTATCGAGTGGGCTTAAAGGTGCAGTTTGATGCTGGCAGAGTTGAGAAGAGACATTTGCTGTTTTCCACGAACTTGAATCATGCAATTGTGCTCTATTGCATATATTTAAAGATACATATATTGGCTTGGAGAACGAATAAGAGATGATTTCTGTTTTCCAGGAACTCGAATCATGCAACTGTGCTCTATTGCATATATTTAAAGACACATATATTGGCTTGGAGAGCGAATAAGAGACGATTTCTGTTTTTCAGGAACTCAAATCATGCAATTGTGCTCTACTGTATATATTTAAAGACAAGTATATTGGCTTGGAAAAAA

Ace file of the UniGene sp_v3.0_unigene3403

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB/POZ domain-containing protein [Arabidopsis thaliana] sp\|Q9LYL9.1\|Y3623_ARATH RecName: Full=BTB/POZ domain-containing protein At3g56230 emb\|CAB87422.1\| putative protein [Arabidopsis thaliana] gb\|AAS77485.1\| At3g56230 [Arabidopsis thaliana] dbj\|BAD44062	-	-	6.0e-11	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAJ0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 353 - 313

Fln protein: MQGISANSHVSCNSCNRVLGFITTKAVLAGFIYCNECQSQGKLHSLHAFRRSWDPDIFCPPFPDFYLEGSDGGIVRAHKAVLAGKCKVFKAMLTAGMAECSLDKVKILDMTAQELQALVDFLYKGMVSQRSLEKHSVALYKASHKYDLPSLTKLSERFLQSNVFRDIPGAIEVAIIHDSKTLQKAVLPYIFNEGFVQSNSPSFVVKTLREAFMFDDYEEYREDHGNEIPWLMEKAIQRIACQIVLEDMEGARQTDTIQGTGERDDAETSVHQHNNVHLDGKLCKPGIVETNLTVPAPDSQPKSCTLGNAISAAERGGGRALFKSSRGSRRRKSRQGKHAEIEAHDAEAMQTN*

Protein Length: 354

Fln nts: GTCGGAGTGGAAGCATCTGAAATGGCATACGCTGCGTGCTGGTTGCATGCTTCTTGATCGCCCTTTTTCATATTCTGAAAGCCGCTGGTTACCTTTACACTACTTTAAAGCAAAGCCCAAAGCTGACAAAAGATTTCCTTCATATGAGTCTCTGATCACCCGGAA_-_ATGCAAGGGATTTCTGCAAATTCTCACGTATCATGTAATTCCTGCAATCGAGTATTGGGGTTCATCACAACGAAGGCTGTCCTGGCCGGTTTTATCTACTGCAATGAATGCCAATCCCAAGGGAAGCTCCACTCCTTGCATGCCTTCAGGAGGTCTTGGGACCCAGACATCTTCTGTCCACCTTTTCCTGATTTCTACCTAGAGGGAAGCGACGGAGGAATTGTCAGGGCACATAAGGCCGTACTGGCGGGCAAGTGCAAAGTATTCAAAGCCATGCTCACGGCAGGCATGGCCGAATGCAGCCTGGATAAAGTGAAAATTCTAGACATGACAGCTCAAGAATTGCAGGCATTAGTGGACTTTCTATACAAGGGCATGGTCTCCCAAAGAAGCCTGGAAAAGCATTCCGTTGCTCTCTACAAGGCCTCACACAAGTATGACTTACCTTCATTGACAAAGCTTTCTGAACGGTTTCTGCAATCTAATGTCTTCAGGGATATTCCGGGTGCTATTGAGGTTGCAATTATCCATGATTCAAAAACATTGCAAAAGGCTGTGTTGCCTTATATTTTCAACGAGGGTTTTGTCCAAAGCAATTCCCCTTCATTTGTAGTAAAAACCCTCAGGGAGGCTTTTATGTTTGATGACTATGAAGAATACAGAGAGGATCATGGCAACGAGATTCCTTGGCTCATGGAGAAGGCTATACAACGGATAGCATGCCAAATTGTGCTCGAAGACATGGAGGGCGCTCGACAAACGGATACCATACAGGGTACAGGAGAGAGGGATGATGCTGAAACCTCTGTTCACCAGCATAACAATGTGCATCTTGATGGGAAACTCTGCAAACCAGGAATAGTTGAAACAAACCTCACAGTTCCTGCTCCAGATTCTCAGCCTAAAAGTTGTACGCTTGGAAATGCAATCAGTGCTGCAGAGAGGGGAGGTGGCAGGGCTCTTTTTAAAAGCTCTCGTGGTTCTAGACGAAGGAAGAGTCGCCAAGGGAAGCATGCTGAGATAGAAGCTCACGATGCAGAAGCTATGCAGACAAATTAAATACCATGTTTTGTGATCAAATTAAACTAATTTATCACATTGGTATGTAGAGGACTTAATCATGTGGATAGAAAATGTCTAGGGTCTAGAATGAATCTGTGTGAGAATCTATGCAAGGCCGACCATATTTGAATTCTATTGTTGAAGAGATTTCTCGTTATACCACCAAGTTGTGTAGCAGCTATGAGTCTTTTAATTTGATATTCACATTGTTTTCATTATGGACAAATCTACATACCCATATTTTCTTTGACTGTCTCTGACTTGATGCAGCATCCACTGTAGAAATTTTGGTACGAGTTGTAAGTTGTATCAGTTCAGCAAAGCTACTTCCATATAGCTTAAAATGCACTTTATGAGCCGAATCGTGAAATTATCTGAACAAATTAGTTGGTTAATGTTGGGAGGTGCAAAGAGTCCCCCTATCGAGTGGGCTTAAAGGTGCAGTTTGATGCTGGCAGAGTTGAGAAGAGACATTTGCTGTTTTCCACGAACTTGAATCATGCAATTGTGCTCTATTGCATATATTTAAAGATACATATATTGGCTTGGAGAACGAATAAGAGATGATTTCTGTTTTCCAGGAACTCGAATCATGCAACTGTGCTCTATTGCATATATTTAAAGACACATATATTGGCTTGGAGAGCGAATAAGAGACGATTTCTGTTTTTCAGGAACTCAAATCATGCAATTGTGCTCTACTGTATATATTTAAAGACAAGTATATTGGCTTGGAAAAAA

Fln Alignment:

Contig3403___DGGIVRAHKAVLAGKCKVFKAMLTAGMAECS---LDKVKILDMTAQELQALVDFLYKGMVSQRSLEKHSVALYKASHKYDLPSLTKLSERFLQSNVF-RDIPGAIEVAIIHDSKTLQKAVL
D5AAJ0______________NGPPIHAHRVVMATKSSVFRSMFEAD--ECKDPHTGPIPIPEMSHDELRCLLEFLYSGSISEENIEQHGHVLFIAADKYDIPFLSKICEAHISNSINPSNVLDVLELATVCSSTALKETAV

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
914			83	16	0.994512
1048	66			33	1.0
1238	25			75	0.996473
1240			25	75	0.996473
1242			25	75	0.996473
1328		14		85	0.993533
1340		14		85	0.993533
1344	87	12			0.992554
1346		12	75	12	0.975346
1348		87	12		0.992554
1349	12		87		0.992554
1351		87		12	0.992554
1353	85			14	0.993533
1355	85		14		0.993533
1356			14	85	0.993533
1357		14		85	0.993533
1360	85			14	0.993533
1362		14		85	0.993533
1432		16		83	0.994512
1472			10	90	0.90298
1473		10		90	0.90298
1475	10			90	0.90298
1481	90		10		0.90298
1487	10			90	0.90298
1720	12		87		0.992554
1721	75			12	0.975346
1722	87			12	0.992554
1724			12	87	0.992554
1725		12		87	0.992554
1840		20		80	0.995493
1908	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain