SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3399

Length: 1749 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3399

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ATP-dependent RNA helicase [Arabidopsis thaliana]	-	-	1.0e-31	34%
FL-Next	Isoform 3 of DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700	-	-	0.0	26%

Source	Gene names
Sma3	GSVIVT00034982001; POPTRDRAFT_1092668; RCOM_0436820;

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000173	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q0D8N0-3

Fln msg: STOP codon was not found. Distance to subject end: 50 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 215 - 330

Fln protein: MLAKVRMIGKPLKNLLEIRSVSLHPGASLAHQVKGLGLCVPEILVSTPERLSNLIALKALDISSISFLVIDGLKKIVDGDFVDDLKSLRQHILGNPQTVVLSNTYAGMSTTLAQYLLKDPIQRVSEDKSIALQSACITQSVSIFISEEKKVEKILKILRAVRDKQQITLLGSIAIIVGSVGKEQELLATLESEGYSVNSTINDPKNQGKVPGNGS

Protein Length: 216

Fln nts: GTGACCCAAAACTTAGGCATTCCGTCAAATACCTAGAAAACTCTCAGCTTCAAAACTGGGTGAAATGTCTTCTCAGAGTCTAAACTCTTCTTTAAAGCTGGGTGAAATGTCTTCTTAGAGTCCAGACTCTTCATGCATATGATTGCAGGTTTCCCATCCTATTTTTAAAGCAGAATGGTTTTTCCATCATATTTCGCTACCCAGCATACAATTTAGCGATTTGCATATCCAGAGTAAGAGAAGAGAAAGGGTGCGAGTTTACAATCCGAGGGTGTGAAGACGAAGAAGAGGAGATGGGGAAAGGGGAGGAGACCATAGCGAAGAAACGGAACAAGGTGAAACGCAAACGGCTGAGAAGGGATTTGGCCACCACTTCCGACTTCATCAAAGGCGTCATTGCTGCCAAACACCGCCGGAAGGCTGGAAAGCGTCGAATGTGCGAGGGTATGTGCTATACGCTTCCCACCCCTGAAAACCCCTTTAATGATCCAATTGACAGCAATTCTGGCAAGAAATGCCACAAGAAGAAAAAGCAAGAACCTTCTGCTAGAGTTAAAGAACAGTTACCTGCAGGAAAAAAAGACACTGTACCTCAGAAAAGATCCTTTTTTGGAGATGAGATTGATAACACGAGCTGGAAAAAACAGAAAAAAGAAGAGACTGTAATGGAAAAGATCGAAGCTAGCCTTTTGCACAAAACTGTCTCACTAGTTAAAGACTTGAAACAGAATGAAGATGAACCGAGTAGCCAAGTTGTATCTTCACTTGGTCTTAGCAGAAGCACTGTGGATATTAGCAGGTTCTGGAGAAGTGCAACTCCAGAGATGATTCTGAAACGAACTTTGGATGTGGTGAGCCAAACAGGAGAAGCTGATGTGATGCAAGAAGGGGAGTACGAGTTAACTTCAAATAATAAATGGAGAAGAGAACTTTGGGAAGCATGTTTAAAGGGGTCAAACATTTTGGCAAGTTCCCAAGTGTCATTTGACTTGCAACAAACTGTTGTGCTGGTTTCTGCTGCTGCTTCACATATCATAGATAGACGAAGGAGAGATTCATTTGTACATGGTCCTATGGTTCTAATCGTTGTAGCTTCTCAAGAAC_-_ATGCTAGCGAAGGTGAGAATGATTGGGAAACCACTGAAAAACCTTCTCGAGATACGCTCAGTTAGTCTGCACCCAGGAGCTTCATTGGCCCATCAAGTAAAGGGGCTAGGGTTATGTGTACCAGAGATATTGGTCTCTACACCTGAGCGGCTTTCCAACCTAATTGCATTAAAGGCACTTGATATATCAAGTATCTCTTTCCTGGTTATTGATGGGTTAAAGAAAATTGTAGATGGAGATTTTGTTGACGATCTGAAATCATTGAGACAACATATTTTGGGAAATCCCCAAACAGTTGTTTTAAGTAATACTTATGCTGGAATGTCTACCACCCTAGCTCAATACCTCCTCAAGGATCCTATACAAAGGGTGTCAGAGGATAAATCTATTGCTCTCCAGAGTGCCTGCATTACTCAGTCTGTTTCCATTTTTATATCAGAAGAAAAAAAAGTAGAGAAGATTTTGAAAATTTTGAGAGCAGTAAGGGACAAGCAACAAATTACCTTGCTAGGGAGCATTGCGATTATAGTTGGAAGTGTTGGGAAGGAACAGGAACTGTTAGCTACCTTGGAAAGTGAAGGATATTCTGTTAATAGTACCATTAATGATCCAAAAAATCAAGGAAAGGTTCCTGGCAATGGCTCA

Fln Alignment:

Contig3399___RMIGKPLKNLLEIRSVSLHPGASLAHQVKGLGLCVPEILVSTPERLSNLIALKALDISSISFLVIDGLKKIVDGDFVDDLKSLRQHILGNPQTVVLSNTYAGMSTTLAQYLLKDPI
Q0D8N0-3____________RQVEKEFKESAPLDSLCVYGGVPISHQMRALNYGV-DVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
498	82		17		1.0
636		16		83	0.994512
991	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain