SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3393

Length: 3370 nt

UniGene Fasta

>sp_v3.0_unigene3393
GAACGGCAGCTGAATAAGATACGTTTTTTCAGCTCAAGTGCGGGGAGGATTTTACAATATTAATTACGGTTTAAATTTCGATTTTGGCGTCTGCTGAGACACGGAGAAAATCCAATCGCTGACCAATTGATATACCGTAGTGAAATTACCCGACACTCAGCTGAGAATTAAGTCTTCTGAATTTTGTTGGGCGTTTGACTTGGATGTCTGAGTTTGATCCAATTTGAGGTTATTGAATTATGATTCTTTGCATTCAATGGATATGCCTACAGAGCATAAATGACAGACCGAGCAGCTCCTCGGGCATCTCCACTCAAGCGTATTCTGGTACAATGTTCTCCTCAGGTTAAGGAATATGGATGCTGTGTGGCAAAAAGAGTTCCACAAGTTGAGCGTGATATGTGTCTAGAGGAGTTCCTGGCATTGAAGACTTGTATGCAGAATGTGTTAAAGAGCAAGCATTAATTAGCATTTTGATTCCAAAGATCTAGAATTCAAGAATGTGGAGGCAATCTCTCTTTTTATCATGATTAAGTGGCTCTCAATTCTAATCTAGAGTATGCTGTCCAAGACTAAACTTCATTATTAACTCAAGAGCTATAGGAGTCGGTTTTACTGTTATTTCGAAGAAACCAGCTCAAGACATGTTTCGACCACAAAGTGGGTCAAGCTCTCGGTCCAGACCAGCTTTAGCTGGGTCTGGTGCTTTATCTCATGTTTATGTTCAAAATCCACCATTGAGATGTAACATTCCTGGTGTTTTGGGTTTGCACTATGATGATGGTAATAAGTTACTGCTTGCTTCGACATCAAATCAGATATTTTCATGGCAAGCAAATCAGTTTACATCTGAGGGTATTCCAAATGTTGTTACAATAAATGAAGGACCTGTTTTATCTATTAGATATTCTTTGGATGGAAAAATTATAGGTGTACAGCGATCTCAACAAGAAGTTGAATTTATCAATCGAGAAACATCCAAAGTATTCAATCTACGGTGCAAGGTTGAATCTGAGTGTATACTGGGCTTCTTTTGGACGGACTGCCCAACATGTGATATAGTACTTGTAAAGACGAGTGGACTTGATCTATATTCATTGCAAGTTCAGTTAAATAGTCTTAAGTTTGTGGAGACAAGACGATTCAATGTCAGCTGGTATGTGTACACACATGAGAGTCGGTTGGTTCTTCTTGCATCTGGAATGCAGTGCAAGACTTTGACTGGATTTCAGTTTTCCGCAGGAGGCATTATCCGTTTGCCAAAATTTGAGGCTGCAATAACTAAAGCTGAGGTGAATAAGAAGCCTGTTTTAGGTCCAGAGGATGTCCAAATAGCTACAATGTATGGGAGAATTTATTGTTTACAGGTTGATCGGGTAGGCATGCAGCTTCACTTGTATCGGTTTTATCGTGATGCTGTTGTGCATCAGGGTTCTTTGCCGATATATTCAACAAAGGTGGCCATCAACGTAGTGGACAATGTACTTCTGGTTCATCAGGTGGATGCAAAAGTAGTTTTGTTGTATGACATATTTGCAGATTCAAAGGCTCCTATATACTGCTCCTCTTCCTCTCTTGGTGAGGGGTCCATTAGGATCTACTGTAATTTCTGCTAGAAACAAAGACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCAAATTATTTGGCTGGAGCACCTGAAACTGCTGGGTCCAACAGAGCTGTTAGCCAACAGCCTTCAGATTCTCATTTAAATGGGCAAAAAACATTCAAGCTGGATGCTTCTCCAAGTAAGAACGCTGGAGTGGTTGACATGCATGGTAAGGCCACTAAGGCTGCGACTGATGGTACTGAGGTTGAGAAGGAAACTGTTCATGCTGTTATAACTTCAGCCTTGAGGGAATCTTCGAGCAGCTCTTTTGGAGATACTGACTCTCAGGAAAATGTAAACTCTGGCCATGTAAGTGCAAGGCCAGAGGGTAGCTCTTCAACACAACACGTGCTTCCTTCTGATGTAATCAAGGATGATAGCAGGGAGGATAGCAATGTTAAAGCGGAAAGAAGGGCTAGTATTGATTCTGAGAACTCCAGCGCAAGACATGAAAAGGCACTTGTACAATCTGAAAGCAGTGAAATCACTGCACAAGGGCCACTAGAATCAGCCATACCAGACCGACATAGGCCTCAGACTGCTAGCACCATTATTTCACCTGATGAAATATACAACAGTGTATTTGCTGTTGTTGAGGAGGAAATTTCAGGGGACCCAATGTACTTGGTTACACTTATTGTAGAATATTTTCGCAGTGCAGCTGCAGAGAAACTTAAAGTTCCTCCTGGGTTACATGTATTAACAGTACAGCTTCTTGCACGTGATGAATGCTATGTTGAATTAGAACAATTTGTTTTGAACAAGATTGTGGAGCCATCAAAGGAGGTTGCAATGGAGCTTTTGGAAATTGGCTCTTCTCACATACCGACTCGTAAGCTGGGTATCGACATGTTGAGGCAACTCTCATGTCATAGTGAATATGTGTCATTGCTACTTCAAGATGGTCGCTTTATTGAAGCTTTACGATATGTTCGACGAAACAGAGTACTTACCATTCCTCCGGTTTTATTTCTTGAAGCAGCTGTCTCTACAAAGGAATCACAGAAGTTGGCCTCTGTCCTGAGGTTTTGTACAGATTTTGTACCAAATTTTGATCAAACACTCGATTATAGTACATTCTTTACCATTTTAAATGACACGAACAATACCATAGTCACTTGATTTACTTATGTCACTACAGAACAAGTCATCATGCAAGTGAACCTGTCTGTTACAGGCATTTATTCGTATTTAATCAATGCCAGTATGGTGTACTCTATAAAGAAACCTTGTAATGCAATCTAATAATAATCAAACACTTCATTATTTGGTTGCCACTGGTGAGAAGTAGTCAGCTTCTTGTGTATGATTGCGTGCTAGTTTATTACATTCTGAGCATTTAACTTTCTTCCTATTGCAACGGAAGTTAAAATGAAGGACAATATTTCCATCTTGTACTTTAACACAATAAGTGATGCAA

Ace file of the UniGene sp_v3.0_unigene3393

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os10g0400900 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0IXT3_ORYSJ	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%

Source	Gene names
Sma3	GSVIVT00025414001; LOC_Os10g26140; OSJNBa0050N08.24; Os10g0400900; OsI_33485; OsJ_31443; PHYPADRAFT_215592; POPTRDRAFT_561228; POPTRDRAFT_576399; POPTRDRAFT_777236; RCOM_0033380; T21B14.16; VITISV_009872;

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Colon cancer-associated Mic1-like	IPR009755	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12010.1	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 7	60%
RefSeq	Arabidopsis thaliana	NP_187808.3	uncharacterized protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002323334.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6HLH1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 439 aas, putative chimeric sequence, your sequence is shorter than subject: 324 - 760

Fln protein: MFRPQSGSSSRSRPALAGSGALSHVYVQNPPLRCNIPGVLGLHYDDGNKLLLASTSNQIFSWQANQFTSEGIPNVVTINEGPVLSIRYSLDGKIIGVQRSQQEVEFINRETSKVFNLRCKVESECILGFFWTDCPTCDIVLVKTSGLDLYSLQVQLNSLKFVETRRFNVSWYVYTHESRLVLLASGMQCKTLTGFQFSAGGIIRLPKFEAAITKAEVNKKPVLGPEDVQIATMYGRIYCLQVDRVGMQLHLYRFYRDAVVHQGSLPIYSTKVAINVVDNVLLVHQVDAKVVLLYDIFADSKAPIYCSSSSLGEGSIRIYCNFC*

Protein Length: 325

Fln nts: GAACGGCAGCTGAATAAGATACGTTTTTTCAGCTCAAGTGCGGGGAGGATTTTACAATATTAATTACGGTTTAAATTTCGATTTTGGCGTCTGCTGAGACACGGAGAAAATCCAATCGCTGACCAATTGATATACCGTAGTGAAATTACCCGACACTCAGCTGAGAATTAAGTCTTCTGAATTTTGTTGGGCGTTTGACTTGGATGTCTGAGTTTGATCCAATTTGAGGTTATTGAATTATGATTCTTTGCATTCAATGGATATGCCTACAGAGCATAAATGACAGACCGAGCAGCTCCTCGGGCATCTCCACTCAAGCGTATTCTGGTACAATGTTCTCCTCAGGTTAAGGAATATGGATGCTGTGTGGCAAAAAGAGTTCCACAAGTTGAGCGTGATATGTGTCTAGAGGAGTTCCTGGCATTGAAGACTTGTATGCAGAATGTGTTAAAGAGCAAGCATTAATTAGCATTTTGATTCCAAAGATCTAGAATTCAAGAATGTGGAGGCAATCTCTCTTTTTATCATGATTAAGTGGCTCTCAATTCTAATCTAGAGTATGCTGTCCAAGACTAAACTTCATTATTAACTCAAGAGCTATAGGAGTCGGTTTTACTGTTATTTCGAAGAAACCAGCTCAAGAC_-_ATGTTTCGACCACAAAGTGGGTCAAGCTCTCGGTCCAGACCAGCTTTAGCTGGGTCTGGTGCTTTATCTCATGTTTATGTTCAAAATCCACCATTGAGATGTAACATTCCTGGTGTTTTGGGTTTGCACTATGATGATGGTAATAAGTTACTGCTTGCTTCGACATCAAATCAGATATTTTCATGGCAAGCAAATCAGTTTACATCTGAGGGTATTCCAAATGTTGTTACAATAAATGAAGGACCTGTTTTATCTATTAGATATTCTTTGGATGGAAAAATTATAGGTGTACAGCGATCTCAACAAGAAGTTGAATTTATCAATCGAGAAACATCCAAAGTATTCAATCTACGGTGCAAGGTTGAATCTGAGTGTATACTGGGCTTCTTTTGGACGGACTGCCCAACATGTGATATAGTACTTGTAAAGACGAGTGGACTTGATCTATATTCATTGCAAGTTCAGTTAAATAGTCTTAAGTTTGTGGAGACAAGACGATTCAATGTCAGCTGGTATGTGTACACACATGAGAGTCGGTTGGTTCTTCTTGCATCTGGAATGCAGTGCAAGACTTTGACTGGATTTCAGTTTTCCGCAGGAGGCATTATCCGTTTGCCAAAATTTGAGGCTGCAATAACTAAAGCTGAGGTGAATAAGAAGCCTGTTTTAGGTCCAGAGGATGTCCAAATAGCTACAATGTATGGGAGAATTTATTGTTTACAGGTTGATCGGGTAGGCATGCAGCTTCACTTGTATCGGTTTTATCGTGATGCTGTTGTGCATCAGGGTTCTTTGCCGATATATTCAACAAAGGTGGCCATCAACGTAGTGGACAATGTACTTCTGGTTCATCAGGTGGATGCAAAAGTAGTTTTGTTGTATGACATATTTGCAGATTCAAAGGCTCCTATATACTGCTCCTCTTCCTCTCTTGGTGAGGGGTCCATTAGGATCTACTGTAATTTCTGCTAG___AAACAAAGACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCAAATTATTTGGCTGGAGCACCTGAAACTGCTGGGTCCAACAGAGCTGTTAGCCAACAGCCTTCAGATTCTCATTTAAATGGGCAAAAAACATTCAAGCTGGATGCTTCTCCAAGTAAGAACGCTGGAGTGGTTGACATGCATGGTAAGGCCACTAAGGCTGCGACTGATGGTACTGAGGTTGAGAAGGAAACTGTTCATGCTGTTATAACTTCAGCCTTGAGGGAATCTTCGAGCAGCTCTTTTGGAGATACTGACTCTCAGGAAAATGTAAACTCTGGCCATGTAAGTGCAAGGCCAGAGGGTAGCTCTTCAACACAACACGTGCTTCCTTCTGATGTAATCAAGGATGATAGCAGGGAGGATAGCAATGTTAAAGCGGAAAGAAGGGCTAGTATTGATTCTGAGAACTCCAGCGCAAGACATGAAAAGGCACTTGTACAATCTGAAAGCAGTGAAATCACTGCACAAGGGCCACTAGAATCAGCCATACCAGACCGACATAGGCCTCAGACTGCTAGCACCATTATTTCACCTGATGAAATATACAACAGTGTATTTGCTGTTGTTGAGGAGGAAATTTCAGGGGACCCAATGTACTTGGTTACACTTATTGTAGAATATTTTCGCAGTGCAGCTGCAGAGAAACTTAAAGTTCCTCCTGGGTTACATGTATTAACAGTACAGCTTCTTGCACGTGATGAATGCTATGTTGAATTAGAACAATTTGTTTTGAACAAGATTGTGGAGCCATCAAAGGAGGTTGCAATGGAGCTTTTGGAAATTGGCTCTTCTCACATACCGACTCGTAAGCTGGGTATCGACATGTTGAGGCAACTCTCATGTCATAGTGAATATGTGTCATTGCTACTTCAAGATGGTCGCTTTATTGAAGCTTTACGATATGTTCGACGAAACAGAGTACTTACCATTCCTCCGGTTTTATTTCTTGAAGCAGCTGTCTCTACAAAGGAATCACAGAAGTTGGCCTCTGTCCTGAGGTTTTGTACAGATTTTGTACCAAATTTTGATCAAACACTCGATTATAGTACATTCTTTACCATTTTAAATGACACGAACAATACCATAGTCACTTGATTTACTTATGTCACTACAGAACAAGTCATCATGCAAGTGAACCTGTCTGTTACAGGCATTTATTCGTATTTAATCAATGCCAGTATGGTGTACTCTATAAAGAAACCTTGTAATGCAATCTAATAATAATCAAACACTTCATTATTTGGTTGCCACTGGTGAGAAGTAGTCAGCTTCTTGTGTATGATTGCGTGCTAGTTTATTACATTCTGAGCATTTAACTTTCTTCCTATTGCAACGGAAGTTAAAATGAAGGACAATATTTCCATCTTGTACTTTAACACAATAAGTGATGCAA

Fln Alignment:

Contig3393___LSHVYVQNPPLRCNIPGVLGLHYDDGNKLLLASTSNQIFSWQANQFTSEGIPNVVTINEGPVLSIRYSLDGKIIGVQRSQQEVEFINRETSKVFNLRCKVESECILGFFWTDCPTCDIVLVKTSGLDLYSLQVQLNSLKFVETRRFNVSWYVYTHESRLVLLASGMQCKTLTGFQFSAGGIIRLPKFEAAITKAEVNKKPVLGPEDVQIATMYGRIYCLQVDRVGMQLHLYRFYRDAVVHQGSLPIYSTKVAINVVDNVLLVHQVDAKVVLLYDIFADSKAPI
F6HLH1______________LSHVYIQHPPLRCSIPGSKGLFYDDGNKLILSPTSDQVFSWKTVPFASHVAPTSDSISEGPVLSIRYSLDSKLLAIQRSNHEIQFWNRETGETFSQRCRSETESILGFFWTDCPKCDIVFVKTSGMDLFSYDSETKSLHLVETKKMNVSWYVYTHESRLILLASGMQCKSFTGFQLSSAGMIRLPKFEMAMAKSEANNKPVLAAEDVHIITVYGRIYCLQVDRVAMLLHSYRFYRDAVVQQGSLPIYSDKIAISVVDNVLLVHQVDAKVVILYDIFADSRAPI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
574	90		10		0.90298
627	20	80			0.999996
686		83		16	0.999991
820		12	87		0.992554
832	12		87		0.992554
835	87			12	0.992554
836			87	12	0.992554
999	12		87		0.992554
1000			87	12	0.992554
1001			12	87	0.992554
1003		87	12		0.992554
1254			25	75	1.0
1255	25	75			1.0
1260		28		71	1.0
1261	28		71		1.0
1303			66	33	0.997452
1304	66			33	0.997452
1846	80		20		0.999996
1870			88	11	0.923564
2000		88		11	0.923564
2029			11	88	0.923564
2105		16		83	0.994512
2183		16		83	0.994512
2262	14	85			0.993533
2501		88		11	0.923564
2503		88		11	0.923564
2504		88		11	0.923564
2632	80	20			0.999996
3130		66		33	1.0
3219		10		90	0.90298
3220		11		88	0.923564
3221	87	12			0.992554
3222			14	85	0.993533
3264	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain