SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3332

Length: 3674 nt

UniGene Fasta

>sp_v3.0_unigene3332
TATTTGCCTTTGTATATTTACATACCAGTACACGCCAACAGATTCATTGTATTCTCTACTGTGTGCACATGATGCATTTTTGTTGGGTCTGACTTGAACTGTGGATGTATGCTTGAAGGAAAACATTGGTTATTAATTTTGGGTTTTTTGGGTTGGTGGGTGTATAGCAGAGAGTGAGAAATCATGCCGAGAAGGCGGAAGATGAAGGGAGGAGGGGGCGGAAGGGAGGATAATGGACCAGTTGGGGATGTTATTCATCATTCCTCTTCCACTGTTCTCCATCTTTTACCCACTGAAAGGGTTAATAAGACACCACCCAGAGCAGCAGCAGCGGAAAAAGTTGAAGTAGCAGCAGGTTTGCCTGTGTCGAGCAAAGCTTTGCGGTTTCCTCAACGACCAGGATTAGGTCAAGCGGGCATGAAATGCATTGTGAAAGCGAACCACTTCTTGGCTCAGCTGCCCGACAAAGACCTCCATCAATACGACGTATGCATTACGCCAGAAGTGACATCGAAAAGTGTGAACCGAGCTATCATGGGACAGCTGGTGAAAATGTACAGAGATACCGAGTTGGGCAGGAGGCTTCCTGTGTATGATGGCCGAAAGAGTCTTTATACTGCTGGTTTGCTGCCCTTCACGTCGAAAGAATTTACTATAGCTCTTGCAGGGGAAGATGAGGGAAACGGCGCTTCAAGTTGCAAAGAAAAAGTATCGAAGAAAAGGCAATTCAAGGTGTTTATCAAGTTTGCAGCGCGAGCAGATTTACACCATTTAGGGCAGTTTTTAGCTGGTAGGCAAGCGGATGCTCCTCAGGAAGCTCTCCAGGTGCTTGATATTGTACTCAGGGAATTGTCAATTCAGAGGTATTGTCCTGTCGGAAGGTCCTTTTACTCTCCTGCCTTGGGTAGAAGACAACCGCTTGGAGAGGGTTTGGAAACCTGGCGTGGGTTTTACCAAAGCATCAGGCCAACCCAAATGGGCTTGTCCCTTAACATAGATATGTCTTCAACTGCTTTCATTGAACCGCTGCCTGTTATTGAATTTATAGCAAAAGTTCTAAATAAGGATGTGGTAGCTAGGCCCTTGTCTGATGCTGATCGTATAAAGATTAAAAAAGCCTTGAGAGGTGTAAAAGTAGAAGTGACACACAGGGTAAATGTGCGTAGGAAGTACCGTATCTCTGGATTGACATCACAACCTACTCGGGAATTGATATTCCCAGTGGATGATAAATCAACAATGAAATCAGTAGTTGAATATTTCCAAGAAATGTATGGCTTTACAATACAACATACTCATTTGCCTTGTCTTCAAGTGGGAAACACACAGAAGGCAAACTATCTACCAATGGAGGCTTGCAAGATAGTGGAAGGTCAGAGATATTCAAAGCGATTAAACGAGAAACAAATTACTGCTCTGTTAAAAGTTACATGTCCACGGCCCCGAGAAAGGGAAATGGACATCTTGCAGACTGTGTATCAGAATGATTACGATCAAGATCCTTATGCGAAGGAATTTGGTCTAAAAATTAGTGACAGACTTGCCTCTGTAGAAGCTCGAATTCTGCCTGCTCCATGGTTGAAATACCATGACACTGGGAAGGAAAAGGTATGCCTACCGCAGGTAGGTCAGTGGAACATGATGAATAAGAAAATGGTCAATGGAGGCACAGTTAACCACTGGGCTTGCATCAACTTCTCACGGGGTGTTCAAGAAAGTGTTGCTCTTGGATTTTGTCACGAGTTGGCTCAAATGTGCCAAATCTCTGGCATGGTATTCAATCTTGAACCTGTTATTCCAATCTACATGGCACGACCTGACCAGGTTGAAAGAGCTCTGAAAATTGTATACAAAGATGCAATGAACAAACTCAGAGGCAAGGAGTTGGAGCTCCTAATAGTCATTCTACCTGACAACAATGGCTCTCTGTATGGAGATGTCAAACGAATATGTGAAACTGATCTTGGATTGATAACCCAGTGCTGTTTGACAAAGCATGTATATAAAGTTAACAAGCAGTACCTGGCTAATGTCTCCCTAAAGATTAATGTAAAGATGGGTGGTAGAAACACTGTACTTTTGGATGCTCTAAGTTGCAGAATACCTTTAGTCAGCGATATACCAACAATAATTTTTGGAGCAGACGTAACTCATCCAGAGAATGGAGAGGACTCCAGTCCATCCATAGCAGCTGTTGTTGCTTCCCAAGATTGGCCAGAAGTCACAAAATATGCAGGCTTGGTATGCGCTCAGGCACACCGGCAAGAGCTGATTCAAGATTTATTTAAGACCTGGCAGGATCCTGTGAGGGGCACTGTATTTGGCGGCATGATAAGGGAGCTTTTAATTTCTTTTAGAAAAGCAACGGGACAGAAGCCTTTACGAATCATATTTTACAGAGATGGTGTAAGTGACTGCCAGTTTTATCAAGTACTCTTATATGAATTAGATGCAATCCGCAAGGCCTGTGCATCACTTGAGCCAAACTATCAACCTCCTGTGACTTTTGTAGTTGTTCAGAAGCGCCACCATACTCGTTTATTTGCCAACAATCATAATCACAAAAACACTACTGATAAGAGTGGCAACGTTTTGCCAGGCACTGTGGTGGATTCCAAAATATGCCATCCTACTGAATTTGATTTTTTCCTTTGCAGTCATGCTGGTATTCAGGGAACTAGTAGGCCTGCTCACTACCATGTTCTTTGGGATGAGAACAACTTCACAGCAGATGGAATGCAGTCATTGACAAACAATCTGTGCTACACGTATGCTCGCTGTACGCGTTCAGTTTCCGTAGTTCCGCCAGCTTACTACGCTCACTTAGCTGCTTTTCGAGCGCGATATTACATGGAACCAGATATGTCAGAAGGTGGATCCTTGTCCAACGGAAGGAGTGCTGCAGCAGGAAATGGTGGTGGATCACGGAATGGCCGTGTAACGGGTGGGGGTGGCAGTGGGAATGCAAATGGGAATGAGAGTGGAAATGGTGGTGTACGCCCGTTGCCGGCTCTCAAGGAAAATGTGAAAAGGGTCATGTTCTATTGCTGATCTCCATCGCTCCCTCCTTGTAACAATCCATCATCCCTGTAGAGTGGTGTAACAATCAATTTTACGGCTTTTCTTTATATTGATTTTATATGTGGCATGACATTGTCATTTTTCTATCAATTTAGTGGGAGTGTAATTCGGTCTAATTGGTGAAGAAATATAAATGTACAGACCTTCAAAATCTTCTCTCACAGAGCAGTGTTCAGTCCAGAAGGCCAGAGAACTTGCATACTTCATCCAAATTATTTTAAACAACAAACACAGCCCTATTTAAAGATAGTTTTAAACTGCAATGGATGTAGCTGGTATCAGAAAGCGCATGCCTAGTGCAGTAGATATATATATGGAGAACAAAGCGTTGAATGCTTCCTGTTAGAATAGCTTCGACTCACGGAGATTGCACCATTTTAGGTAAGCCTTGCATCATTGTACCATTCATTCACATTTGTGTGGGGAGAACATAAAGGGAGAACTAGGTGTTCAGTAGTTCCTGTTGGAGCAGCTTTGCCTCACAAATATTTAAACCATTAGGTCAGCTTTGCTTCGTTTTACTATTCCTACGAATTGTGTGCTATATAATATTAATACAACTGGGCCGAATATTGTGAAAGGTCCTCTTACCA

Ace file of the UniGene sp_v3.0_unigene3332

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Piwi multi-domain protein	-	-	45%
FL-Next	tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	37%
Sma3	Chromosome chr5 scaffold_2, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00020067001;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43810.1	ZLL, PNH, AGO10 Stabilizer of iron transporter SufD / Polynucleotidyl transferase chr5:17611939-17616562 FORWARD LENGTH=988	77%
RefSeq	Arabidopsis thaliana	NP_001190464.1	protein PINHEAD [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002312555.1	argonaute protein group [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PLA9

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MPRRRKMKGGGGGREDNGPVGDVIHHSSSTVLHLLPTERVNKTPPRAAAAEKVEVAAGLPVSSKALRFPQRPGLGQAGMKCIVKANHFLAQLPDKDLHQYDVCITPEVTSKSVNRAIMGQLVKMYRDTELGRRLPVYDGRKSLYTAGLLPFTSKEFTIALAGEDEGNGASSCKEKVSKKRQFKVFIKFAARADLHHLGQFLAGRQADAPQEALQVLDIVLRELSIQRYCPVGRSFYSPALGRRQPLGEGLETWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFIAKVLNKDVVARPLSDADRIKIKKALRGVKVEVTHRVNVRRKYRISGLTSQPTRELIFPVDDKSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNTQKANYLPMEACKIVEGQRYSKRLNEKQITALLKVTCPRPREREMDILQTVYQNDYDQDPYAKEFGLKISDRLASVEARILPAPWLKYHDTGKEKVCLPQVGQWNMMNKKMVNGGTVNHWACINFSRGVQESVALGFCHELAQMCQISGMVFNLEPVIPIYMARPDQVERALKIVYKDAMNKLRGKELELLIVILPDNNGSLYGDVKRICETDLGLITQCCLTKHVYKVNKQYLANVSLKINVKMGGRNTVLLDALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVFGGMIRELLISFRKATGQKPLRIIFYRDGVSDCQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNHKNTTDKSGNVLPGTVVDSKICHPTEFDFFLCSHAGIQGTSRPAHYHVLWDENNFTADGMQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYMEPDMSEGGSLSNGRSAAAGNGGGSRNGRVTGGGGSGNANGNESGNGGVRPLPALKENVKRVMFYC*

Protein Length: 957

Fln nts: TATTTGCCTTTGTATATTTACATACCAGTACACGCCAACAGATTCATTGTATTCTCTACTGTGTGCACATGATGCATTTTTGTTGGGTCTGACTTGAACTGTGGATGTATGCTTGAAGGAAAACATTGGTTATTAATTTTGGGTTTTTTGGGTTGGTGGGTGTATAGCAGAGAGTGAGAAATC_-_ATGCCGAGAAGGCGGAAGATGAAGGGAGGAGGGGGCGGAAGGGAGGATAATGGACCAGTTGGGGATGTTATTCATCATTCCTCTTCCACTGTTCTCCATCTTTTACCCACTGAAAGGGTTAATAAGACACCACCCAGAGCAGCAGCAGCGGAAAAAGTTGAAGTAGCAGCAGGTTTGCCTGTGTCGAGCAAAGCTTTGCGGTTTCCTCAACGACCAGGATTAGGTCAAGCGGGCATGAAATGCATTGTGAAAGCGAACCACTTCTTGGCTCAGCTGCCCGACAAAGACCTCCATCAATACGACGTATGCATTACGCCAGAAGTGACATCGAAAAGTGTGAACCGAGCTATCATGGGACAGCTGGTGAAAATGTACAGAGATACCGAGTTGGGCAGGAGGCTTCCTGTGTATGATGGCCGAAAGAGTCTTTATACTGCTGGTTTGCTGCCCTTCACGTCGAAAGAATTTACTATAGCTCTTGCAGGGGAAGATGAGGGAAACGGCGCTTCAAGTTGCAAAGAAAAAGTATCGAAGAAAAGGCAATTCAAGGTGTTTATCAAGTTTGCAGCGCGAGCAGATTTACACCATTTAGGGCAGTTTTTAGCTGGTAGGCAAGCGGATGCTCCTCAGGAAGCTCTCCAGGTGCTTGATATTGTACTCAGGGAATTGTCAATTCAGAGGTATTGTCCTGTCGGAAGGTCCTTTTACTCTCCTGCCTTGGGTAGAAGACAACCGCTTGGAGAGGGTTTGGAAACCTGGCGTGGGTTTTACCAAAGCATCAGGCCAACCCAAATGGGCTTGTCCCTTAACATAGATATGTCTTCAACTGCTTTCATTGAACCGCTGCCTGTTATTGAATTTATAGCAAAAGTTCTAAATAAGGATGTGGTAGCTAGGCCCTTGTCTGATGCTGATCGTATAAAGATTAAAAAAGCCTTGAGAGGTGTAAAAGTAGAAGTGACACACAGGGTAAATGTGCGTAGGAAGTACCGTATCTCTGGATTGACATCACAACCTACTCGGGAATTGATATTCCCAGTGGATGATAAATCAACAATGAAATCAGTAGTTGAATATTTCCAAGAAATGTATGGCTTTACAATACAACATACTCATTTGCCTTGTCTTCAAGTGGGAAACACACAGAAGGCAAACTATCTACCAATGGAGGCTTGCAAGATAGTGGAAGGTCAGAGATATTCAAAGCGATTAAACGAGAAACAAATTACTGCTCTGTTAAAAGTTACATGTCCACGGCCCCGAGAAAGGGAAATGGACATCTTGCAGACTGTGTATCAGAATGATTACGATCAAGATCCTTATGCGAAGGAATTTGGTCTAAAAATTAGTGACAGACTTGCCTCTGTAGAAGCTCGAATTCTGCCTGCTCCATGGTTGAAATACCATGACACTGGGAAGGAAAAGGTATGCCTACCGCAGGTAGGTCAGTGGAACATGATGAATAAGAAAATGGTCAATGGAGGCACAGTTAACCACTGGGCTTGCATCAACTTCTCACGGGGTGTTCAAGAAAGTGTTGCTCTTGGATTTTGTCACGAGTTGGCTCAAATGTGCCAAATCTCTGGCATGGTATTCAATCTTGAACCTGTTATTCCAATCTACATGGCACGACCTGACCAGGTTGAAAGAGCTCTGAAAATTGTATACAAAGATGCAATGAACAAACTCAGAGGCAAGGAGTTGGAGCTCCTAATAGTCATTCTACCTGACAACAATGGCTCTCTGTATGGAGATGTCAAACGAATATGTGAAACTGATCTTGGATTGATAACCCAGTGCTGTTTGACAAAGCATGTATATAAAGTTAACAAGCAGTACCTGGCTAATGTCTCCCTAAAGATTAATGTAAAGATGGGTGGTAGAAACACTGTACTTTTGGATGCTCTAAGTTGCAGAATACCTTTAGTCAGCGATATACCAACAATAATTTTTGGAGCAGACGTAACTCATCCAGAGAATGGAGAGGACTCCAGTCCATCCATAGCAGCTGTTGTTGCTTCCCAAGATTGGCCAGAAGTCACAAAATATGCAGGCTTGGTATGCGCTCAGGCACACCGGCAAGAGCTGATTCAAGATTTATTTAAGACCTGGCAGGATCCTGTGAGGGGCACTGTATTTGGCGGCATGATAAGGGAGCTTTTAATTTCTTTTAGAAAAGCAACGGGACAGAAGCCTTTACGAATCATATTTTACAGAGATGGTGTAAGTGACTGCCAGTTTTATCAAGTACTCTTATATGAATTAGATGCAATCCGCAAGGCCTGTGCATCACTTGAGCCAAACTATCAACCTCCTGTGACTTTTGTAGTTGTTCAGAAGCGCCACCATACTCGTTTATTTGCCAACAATCATAATCACAAAAACACTACTGATAAGAGTGGCAACGTTTTGCCAGGCACTGTGGTGGATTCCAAAATATGCCATCCTACTGAATTTGATTTTTTCCTTTGCAGTCATGCTGGTATTCAGGGAACTAGTAGGCCTGCTCACTACCATGTTCTTTGGGATGAGAACAACTTCACAGCAGATGGAATGCAGTCATTGACAAACAATCTGTGCTACACGTATGCTCGCTGTACGCGTTCAGTTTCCGTAGTTCCGCCAGCTTACTACGCTCACTTAGCTGCTTTTCGAGCGCGATATTACATGGAACCAGATATGTCAGAAGGTGGATCCTTGTCCAACGGAAGGAGTGCTGCAGCAGGAAATGGTGGTGGATCACGGAATGGCCGTGTAACGGGTGGGGGTGGCAGTGGGAATGCAAATGGGAATGAGAGTGGAAATGGTGGTGTACGCCCGTTGCCGGCTCTCAAGGAAAATGTGAAAAGGGTCATGTTCTATTGCTGATCTCCATCGCTCCCTCCTTGTAACAATCCATCATCCCTGTAGAGTGGTGTAACAATCAATTTTACGGCTTTTCTTTATATTGATTTTATATGTGGCATGACATTGTCATTTTTCTATCAATTTAGTGGGAGTGTAATTCGGTCTAATTGGTGAAGAAATATAAATGTACAGACCTTCAAAATCTTCTCTCACAGAGCAGTGTTCAGTCCAGAAGGCCAGAGAACTTGCATACTTCATCCAAATTATTTTAAACAACAAACACAGCCCTATTTAAAGATAGTTTTAAACTGCAATGGATGTAGCTGGTATCAGAAAGCGCATGCCTAGTGCAGTAGATATATATATGGAGAACAAAGCGTTGAATGCTTCCTGTTAGAATAGCTTCGACTCACGGAGATTGCACCATTTTAGGTAAGCCTTGCATCATTGTACCATTCATTCACATTTGTGTGGGGAGAACATAAAGGGAGAACTAGGTGTTCAGTAGTTCCTGTTGGAGCAGCTTTGCCTCACAAATATTTAAACCATTAGGTCAGCTTTGCTTCGTTTTACTATTCCTACGAATTGTGTGCTATATAATATTAATACAACTGGGCCGAATATTGTGAAAGGTCCTCTTACCA

Fln Alignment:

Contig3332___QRPGLGQAGMKCIVKANHFLAQLPD-KDLHQYDVCITP-----------EVTSKSVNRAIMGQLVKMYRDTELGRRLPVYDGRKSLYTAGLLPFTSKEFTIALAGEDEGNGASSCKEKV------SKKRQ------FKVFIKFAARADLHHLGQFLAGRQADAPQEALQVLDIVLRELSIQR-YCPVGRSFYSPALGRRQPLGEGLETWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFIAKVLNKDVVARPLSDADRIKIKKALRGVKVEVTHRVNVRRKYRISGLTSQPTRELIFPVDDKSTMK----------SVVEYFQEMYGFTIQHT-HLPCLQVGNTQKANYLPMEACKIVEGQRYSKRLNEKQITALLKVTCPRPREREMDILQTVYQNDYDQDPYAKEFGLKISDRLASVEARILPAPWLKYHDTGKEKVCLPQVGQWNMMNKKMVNGGTVNHWACINFSRGVQESVALGFCHELAQMCQISGMVFNLEPVIPIYMARP--------DQVERALKIVYKDAMNKLRGKELELLIVILPDN-NGSLYGDVKRICETDLGLITQCCLTKHVYKVNKQYLANVSLKINVKMGGRNTVLLDALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVFGGMIRELLISFRKATG------QKPLRIIFYRDGVSDCQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNHKNTTDKSGNVLPGTVVDSKICHPTEFDFFLCSHAGIQGTSRPAHYHVLWDENNFTADGMQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYME-PDMSE
Q4PLA9______________KRPGHGRAGRPVKLLCNHFRVSFSNLQDSFHYDVKITASERVERGGKAQDVVSKILCRKVMDKVKEVYGATGLDGKDFAYDGENSLFTVGPLRNNNIECIIVI--DDERSSRRPIKDESPSQIEQSKKRREDRGEKFKVEITFAAKISMKALQAVIQGEVSDKAQDALRVLDIVLRQHASRKGYLLVRQSFFHWSFAPLVELGGGVTGCRGYHISFRPTQSGLSLNMDVSTTMLIKESAVIDFL---LANQSVXNPWK-INWSKAKQVLKGVRITTVH---TNMEFKIFGLSEKPCKEQLFSMRVRSQGSQEEPPQTVDVTVHDYFVNTKQTPLQFSADLPCLDVGRKKRPNYLPIELCKILPGQRYTKALSTQQRTXLVEQSRQKPDERMQVLLKAMDVNNYNSDPLLKACNINVDKQLVRLDGRVLDPPTLKF---GKMEEA-PRNGRWNFNNKTMVRASKIGDWAIACFNSRIRSNEITNMARELQQCCGRRGLV--MADCLGVLEESPQDRNRNPIDRVERMLS-----QMKSRLPKPPQFLLCILPERKNSDLYGPWKRKFLADLGVINQCIAPPNMRKVNDQYLTNVALKINAKVGGLNSVLSVEFAHKIPKISTKPTIIIGMDVSHGSPGHADSPSISAVVSSREWPLISRYRASVRTQSPKVEMIEALYK----PLPSGKDAGMISELLVDFYQSCNPPPNVERKPQQMIVFRDGVSESQFDQVLNVELQAIYKACNHIEAGYKPKVTLIIAQKNHHTKLFPSG--------GPGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDLSE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1893	14		85		0.993533
1896		85	14		0.993533
1956	14		85		0.993533
1957		14		85	0.993533
1958	14		85		0.993533
1959	85			14	0.993533
1960	85			14	0.993533
2873	11	88			0.923564
2874	88	11			0.923564
3241			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
321	332	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain