SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3286

Length: 1751 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3286

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NIF domain containing protein	-	-	2.0e-15	21%
FL-Next	tr=36I5.7; Oryza sativa subsp. japonica (Rice).	-	-	0.0	49%

Source	Gene names
Sma3	170F8.6; GSVIVT00000035001; GSVIVT00021689001; GSVIVT00038024001; LOC_Os03g54850; LOC_Os03g54870; OJ1567_G09.116; OSJNBb0081K01.11; OSJNBb0081K01.13; Os03g0755800; Os07g0109300; OsI_13586; OsI_24622; OsJ_12634; OsJ_22823; P0585H11.131; PHYPADRAFT_119001;

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	NLI interacting factor	IPR004274	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306055.1	predicted protein, partial [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q8LPX2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 373 - 261

Fln protein: MTVPAEKKLLVLDMNGLLVETFHRAEKRPKEPPPDGKAGKNQFVYKRPFCHQFIEFCFQNFVVGVWSSAQKQNVDKLVDFIFGDLKEKLIFCWYQIDCTNTGLRLPENRRKPFFLKELSKLWNKVKPDLPWEEGQYGPFNTLLIDDSPYKALCNPPHTAVFPDPYNAVNKQDDILGGPLQKYLEGLLTASNVQEYVKDHPFGQPAITRESQNWHFYRQVLPMSTMPSKNLQDNGLLHDNMQVTGIDQHSVPGMGVEKNSVADPKEKKKGISHPGTCTQQQTDHGMEKEENGLAERVRRIYKALSNEKHKSHNLCKEDKEAGLRSDHACRAESVLKKGLWFSKWKKKFKYHRGTCFYRHMLRELFRRREKKQA*

Protein Length: 374

Fln nts: TCACGAGTTCAGTCCACAGCTTAGGTTGTGGAGTCTTTCTGCAGTGCTAATCGATCACGCGGAGCCTCTACAACTTATTCTTCTTCCTACTACTCGAGGTATAGAGGTTGCAGTAGTGGGCATCATTTTAAGAGTTAAAAGTTGGAAGCTGGCCGCTGGCTTGGTGCTGTGAGTACAAGGAAGTTTAGTACTTCTTAATTGCTCTGGGTGCAGATGCAGCA_-_ATGACTGTGCCTGCAGAAAAGAAGCTGCTTGTCCTTGATATGAATGGCTTGCTCGTGGAAACATTTCATCGGGCTGAAAAACGTCCCAAAGAGCCCCCTCCTGATGGAAAAGCTGGCAAGAATCAATTTGTTTACAAAAGGCCTTTTTGCCACCAGTTCATTGAGTTCTGCTTTCAGAATTTTGTTGTAGGAGTATGGTCCTCTGCTCAAAAGCAGAACGTTGACAAGCTGGTAGATTTCATATTTGGAGATTTAAAAGAAAAACTGATATTTTGTTGGTATCAAATTGATTGCACAAATACAGGGCTGAGGCTTCCAGAAAATAGAAGGAAGCCTTTCTTTCTAAAAGAATTATCCAAATTGTGGAATAAAGTGAAGCCAGATCTACCATGGGAAGAAGGACAGTATGGACCGTTTAATACCTTATTGATTGATGATAGCCCTTACAAAGCTTTGTGCAATCCTCCACATACTGCAGTGTTTCCCGATCCATATAATGCCGTCAATAAGCAGGATGATATTTTAGGAGGGCCTTTACAAAAATATTTGGAAGGACTTTTGACTGCTTCAAATGTACAGGAGTATGTGAAGGATCACCCGTTTGGACAACCAGCAATCACCAGAGAAAGCCAGAACTGGCATTTCTACCGTCAGGTTCTTCCCATGAGTACAATGCCTAGCAAAAACTTGCAAGACAATGGTCTACTTCATGATAACATGCAAGTTACCGGCATTGATCAACATTCTGTTCCTGGTATGGGAGTAGAGAAGAATAGTGTGGCAGATCCCAAGGAAAAAAAGAAGGGCATATCCCATCCGGGTACCTGCACTCAGCAGCAGACTGATCATGGTATGGAAAAAGAAGAGAATGGTCTAGCAGAGAGAGTAAGGAGGATCTACAAGGCTCTCTCGAATGAGAAACATAAATCTCATAATTTGTGTAAGGAAGATAAAGAAGCTGGTTTACGTTCTGATCATGCATGTCGTGCAGAATCAGTTCTAAAGAAGGGTCTCTGGTTTTCAAAGTGGAAAAAGAAGTTCAAATACCATCGAGGTACCTGCTTTTATCGACATATGCTACGTGAATTGTTTCGCAGGCGAGAAAAGAAGCAAGCCTAGCAGCCATCATATTGTCGGATATTTTTAACTTTCAAGAGTCAAGGTACTTTATTTTCTGAAGGTATATTATGGCTTCCATATTCCCAAATTGAGGCAGCCTGAAGACACAATTACTTTGTGCTATATGCAAGATAAAAAGCACTGGGCGCAGTCCATTTTTGATCATTTAATGCGAGCCTCAATTCAGACCAATTAAAAGGGTTGATCGCACTAGGTTGAATTTTGGAGAAATGTTTGTAAAGGGACCACATTGTTATATTATCTGATATGGGAAGCCTTTTTACTGACCATTCTTATGCAAGATAAAAAGCACTGGGCGCAGTCCATTTTTGATCATTTAATGCCAGCCTCAATTCAGGCCAGTTAAAAAGGGTTGATCGCACTAGGTTGAATTTTGGAGAAATGTTTGTA

Fln Alignment:

Contig3286___IALGADAAMTVPAEKKLLVLDMNGLLVE------TFHRAEKRPKEPPPDGKAGKNQFVYKRPFCHQFIEFCFQNFVVGVWSSAQKQNVDKLVDFIFGDLKEKLIFCWYQIDCTNTGLRLPENRRKPFFLKELSKLWNKVKPDLPWEEGQYGPFNTLLIDDSPYKALCNPPHTAVFPDPYNAVNKQDDIL--GGPLQKYLEGLLTASNVQEYVKDHPFGQPAITRESQNWHFYRQV
Q8LPX2______________ITLLPRVSLTGFRKKKLLILDLNGLLADINQDYHNSHMADAKVR-----GKLGEFTF-FRRPYCHDFLSFCLQNFELGIWSSRKKQNVDSVIDIIMRDFRPLLKFCWDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPDLPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIFPQPYSYLNSNDNSLGPGGDLRVYLENLTVAEDVECYVRNNPFGQPFITQSDPHWSFYAQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain