SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3236

Length: 3037 nt

UniGene Fasta

>sp_v3.0_unigene3236
TACATATTAGCAGTAAACAACCCAGTCACGCAAGTACATGTTCCGATATCGAAGAGGCGCTTTAGGTTTAGATTGAAGAAGGAATGGAGGATTTGTAAGAAAACAGATCAAGGTTTGAAGGAGTTTGAAGGAGTGGAGGAGTTTTGATAACCAAGATTTAAGGTTGGAAAGGTTTTTTTTGAGAAGGATGAATGCAGTGCAGGAAGAGGAATGGCGAAAAGCACAAGAGATTAGCTTCAGCGTGGATCTGGATCTGATCAGTGCGGCAAAACAGCATCTACTGTTTCTTGCTTCCGTCGATCGGTATCGATGCCTTTACCATGGACCAGCTTTACAGAGAGCCATTTACAGGTACGAGCAGTGCTGGCTTCCATTGCTTGCTGAGCACACAGAATCCGGCAATGCAAATTTTCGGCTTGTTGTTCCTCTCGACTGTGAATGGATCTGGCACTGTCACAGGCTCAATCCAGTCCAATACGGAAAGGATTGCAAGAAAATATATGGCAGAATACTGGATGCTTCTTTCGTGGAGTCATTTATCACAGAAGCTGACAGAAAACAGACACAGGATATATGGAAATACTCTTACCCGGAAGAACCATATGAGCTTGATTTGAGTCATTCCGTTCCAGGGAACTCTGCTGGAACGATTTTTAAAAGTATGTATAACATCGAGTATGATCTTACTGACGCAGTCCGGAGGCAAAGCTCATTCTTTCACCAGGTGTCCCGACCATACATGTCCGATGAACGGTTCCTTAAAGGAGCGGAAGAAAGATACAAGGGGTTTCTATACCTTATCAAGAAAAACAGGGACAATTCTGTCAACTGCTTCTGTGTTCCAACCTATGACGTTGATTTGATGTGGCATTCCCACCAGCTGCAGCCGGTTGCTTACAGGAGAGACATGTTAAATTTGCTCGGCAAAGTACTGGAACACGATGACATGGATTCTGACAGAAGCCAGGGTAAGAAACTCGATGTTGGATTTACAGAAACAACAAGACAATGGGAAACCACTTATGGCAGGCGCTACTGGAGAGCTGGGGCTATGCACAAAGGAGACGCACCCTCGCCCGTGCCCGGTCCTCCACTTTCATCGGAGAATTCTAATTGTGTAGGTGAACCTCTGTTTCAGTCTAATCAAGACAACTATCTGACTCCAGTAAAGATTGTGGAGGTGCTTTTGGAAGTGGTAGGTATCAGAAACATACCTGAAGACCACAAAGGTACTCTATTTGTCAGATATCACAAGCATAACTGTCCTGAAATGGAGGCAAAAGAGGTAGAAATAACCTCTGAATCTCAATGCAAACAAATCGCTTCTTTCATGTGTGAAGCCACTGGAGATTTTATCTTTGAGCTCAGATCTCGATCTTCTCGCACAGTAAAAAGGACTAGCAACGGTCTGGGCCGAGTATCGATTCCACTCCAGACTTTGTTGGATTCAACAACCTTATCAGTTGAGAATTGGTTTCCGTTGTCAAGAAACGGGCAAAGAGGTGATTCCAAGCCTATCAGCTTGCACATTGCAGTTTCTGTAACTCCTCCCACAACTGCTCCTTATTTGCTCTGGTGTGTTAGGTCACACTGCTTTGAAAGGAAACTCCAATTTCTGGAATGTATCCGTAGAATTAAGCGAGCAGAAACAGTGATGAGATTTTTGGACAATCATGATAAAGAAATTTTCACTGTTAAAACAAGAACAACGACAAAACCATATACAAGCTCCTTCCTTGAATCTGAAGAGGTATGTTTGCAAGGCTTACCTGACAAGAGGCGTATTCTCACTGTTTATCGAAGAAATCCAAGTTCGAAGAAGTTGATATCTTCGGTTGAAATTGTGGCAAATGCCGAGGAGTTGATTACAGTAGGGGGAACTGCACGATGGGCTTTAATGAATAATTCCTGCAATCTGCTGCTTAAAAACCTTAATAACGTTATCAAGGAAGAACCCATATTCGAGCTAACAGGAAACCTAGGGAAACCTTTGAGGCTTCTGTCTGGTAGAAAGCTGCAGTATGAAGTTAAATATGCTAAACCAGAGATAGAGCATGAATTTGTGACTTTAGTCCGATACACTCGCGACGCTCCATTCGGTCAAGCTACATCTCTCTTCAACTGGAAATCTGGAATCATAGAGGTTGCTCAACAGGAGAGCGTTCTGTTGGTGGTGTTGATATCGACAATCATTTCAGCATCACTAACAAAACACCAGGAGGGATTGAAATGCACTTCCACCCCTGAGGCAGAGGTTAAGACGAAGGTCTTTGCTACAGGCAATGGTAAAAAGAGGGCCTTGGTATCCATGTCAAAGGCACTGACGAGAAGATTAAAGCTGGCGGTAATCGGCGTAGGGGTGGCTGTGGAAGTGGGTGTGGCGGACGTGCTGCTGCTAATAGTAATACCCACGCTACTAATGTGGAATTGGGTATTTTGGTAGCAGCAGCTGTGGCAACAAATGCAAGCAGCGGTTGTGGAGGGTGTGGTAGTGGCTGTGGAGGATGCGGGGGTAATGCTACTTCAGGGGCGGGTGCAGCTTTAGGTGCGGTAACAAACGCGGGCGGCGGTTGTGGAGGATGTGGAAGTGGCTGTGGAGGATGCGGAGGTAGTGCTACCTCAGGGCCAGGTACAGGTTCAGGTGCCAGAGGAGGCTGTGGAGGAGGGTGCGGAGGGGGATGCGGCGGGGGTGGCGGATGTGGCAGTGGTGTGCTATAAACTGATCATTAATTATTAATGGCTTTTCCTTGTCAATAATGAACATCTTATGTATTTTCTTTGCTCCATTATTATCATATCTTATGTATTTCCTTTGCCCCATTATTATCATAGGGTGTTAAACTCATAGGCATGATTCATCGAGTTTTACTTTTGGTTTCAGCAATGATATTACATCCAATAAATAAGGGCAGCTGCGTTTTCATTATTATGTATTTTCTTTGCTCCATTATTATCATATCTTATGTATTTCCTTTGCTCCATTATTATGACAGGGTGTCCAATAAATAAGGGCAGCGTAATCCCTGCGTTTTTATGT

Ace file of the UniGene sp_v3.0_unigene3236

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB37530.1\| putative protein [Arabidopsis thaliana] emb\|CAB80455.1\| putative protein [Arabidopsis thaliana] gb\|AEE86851.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1399	IPR009836	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LME0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 64 aas, putative chimeric sequence, your sequence is shorter than subject: 752 - 815

Fln protein: MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYGKDCKKIYGRILDASFVESFITEADRKQTQDIWKYSYPEEPYELDLSHSVPGNSAGTIFKSMYNIEYDLTDAVRRQSSFFHQVSRPYMSDERFLKGAEERYKGFLYLIKKNRDNSVNCFCVPTYDVDLMWHSHQLQPVAYRRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWETTYGRRYWRAGAMHKGDAPSPVPGPPLSSENSNCVGEPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKHNCPEMEAKEVEITSESQCKQIASFMCEATGDFIFELRSRSSRTVKRTSNGLGRVSIPLQTLLDSTTLSVENWFPLSRNGQRGDSKPISLHIAVSVTPPTTAPYLLWCVRSHCFERKLQFLECIRRIKRAETVMRFLDNHDKEIFTVKTRTTTKPYTSSFLESEEVCLQGLPDKRRILTVYRRNPSSKKLISSVEIVANAEELITVGGTARWALMNNSCNLLLKNLNNVIKEEPIFELTGNLGKPLRLLSGRKLQYEVKYAKPEIEHEFVTLVRYTRDAPFGQATSLFNWKSGIIEVAQQESVLLVVLISTIISASLTKHQEGLKCTSTPEAEVKTKVFATGNGKKRALVSMSKALTRRLKLAVIGVGVAVEVGVADVLLLIVIPTLLMWNWVFW*

Protein Length: 753

Fln nts: TACATATTAGCAGTAAACAACCCAGTCACGCAAGTACATGTTCCGATATCGAAGAGGCGCTTTAGGTTTAGATTGAAGAAGGAATGGAGGATTTGTAAGAAAACAGATCAAGGTTTGAAGGAGTTTGAAGGAGTGGAGGAGTTTTGATAACCAAGATTTAAGGTTGGAAAGGTTTTTTTTGAGAAGG_-_ATGAATGCAGTGCAGGAAGAGGAATGGCGAAAAGCACAAGAGATTAGCTTCAGCGTGGATCTGGATCTGATCAGTGCGGCAAAACAGCATCTACTGTTTCTTGCTTCCGTCGATCGGTATCGATGCCTTTACCATGGACCAGCTTTACAGAGAGCCATTTACAGGTACGAGCAGTGCTGGCTTCCATTGCTTGCTGAGCACACAGAATCCGGCAATGCAAATTTTCGGCTTGTTGTTCCTCTCGACTGTGAATGGATCTGGCACTGTCACAGGCTCAATCCAGTCCAATACGGAAAGGATTGCAAGAAAATATATGGCAGAATACTGGATGCTTCTTTCGTGGAGTCATTTATCACAGAAGCTGACAGAAAACAGACACAGGATATATGGAAATACTCTTACCCGGAAGAACCATATGAGCTTGATTTGAGTCATTCCGTTCCAGGGAACTCTGCTGGAACGATTTTTAAAAGTATGTATAACATCGAGTATGATCTTACTGACGCAGTCCGGAGGCAAAGCTCATTCTTTCACCAGGTGTCCCGACCATACATGTCCGATGAACGGTTCCTTAAAGGAGCGGAAGAAAGATACAAGGGGTTTCTATACCTTATCAAGAAAAACAGGGACAATTCTGTCAACTGCTTCTGTGTTCCAACCTATGACGTTGATTTGATGTGGCATTCCCACCAGCTGCAGCCGGTTGCTTACAGGAGAGACATGTTAAATTTGCTCGGCAAAGTACTGGAACACGATGACATGGATTCTGACAGAAGCCAGGGTAAGAAACTCGATGTTGGATTTACAGAAACAACAAGACAATGGGAAACCACTTATGGCAGGCGCTACTGGAGAGCTGGGGCTATGCACAAAGGAGACGCACCCTCGCCCGTGCCCGGTCCTCCACTTTCATCGGAGAATTCTAATTGTGTAGGTGAACCTCTGTTTCAGTCTAATCAAGACAACTATCTGACTCCAGTAAAGATTGTGGAGGTGCTTTTGGAAGTGGTAGGTATCAGAAACATACCTGAAGACCACAAAGGTACTCTATTTGTCAGATATCACAAGCATAACTGTCCTGAAATGGAGGCAAAAGAGGTAGAAATAACCTCTGAATCTCAATGCAAACAAATCGCTTCTTTCATGTGTGAAGCCACTGGAGATTTTATCTTTGAGCTCAGATCTCGATCTTCTCGCACAGTAAAAAGGACTAGCAACGGTCTGGGCCGAGTATCGATTCCACTCCAGACTTTGTTGGATTCAACAACCTTATCAGTTGAGAATTGGTTTCCGTTGTCAAGAAACGGGCAAAGAGGTGATTCCAAGCCTATCAGCTTGCACATTGCAGTTTCTGTAACTCCTCCCACAACTGCTCCTTATTTGCTCTGGTGTGTTAGGTCACACTGCTTTGAAAGGAAACTCCAATTTCTGGAATGTATCCGTAGAATTAAGCGAGCAGAAACAGTGATGAGATTTTTGGACAATCATGATAAAGAAATTTTCACTGTTAAAACAAGAACAACGACAAAACCATATACAAGCTCCTTCCTTGAATCTGAAGAGGTATGTTTGCAAGGCTTACCTGACAAGAGGCGTATTCTCACTGTTTATCGAAGAAATCCAAGTTCGAAGAAGTTGATATCTTCGGTTGAAATTGTGGCAAATGCCGAGGAGTTGATTACAGTAGGGGGAACTGCACGATGGGCTTTAATGAATAATTCCTGCAATCTGCTGCTTAAAAACCTTAATAACGTTATCAAGGAAGAACCCATATTCGAGCTAACAGGAAACCTAGGGAAACCTTTGAGGCTTCTGTCTGGTAGAAAGCTGCAGTATGAAGTTAAATATGCTAAACCAGAGATAGAGCATGAATTTGTGACTTTAGTCCGATACACTCGCGACGCTCCATTCGGTCAAGCTACATCTCTCTTCAACTGGAAATCTGGAATCATAGAGGTTGCTCAACAGGAGAGCGTTCTGTTGGTGGTGTTGATATCGACAATCATTTCAGCATCACTAACAAAACACCAGGAGGGATTGAAATGCACTTCCACCCCTGAGGCAGAGGTTAAGACGAAGGTCTTTGCTACAGGCAATGGTAAAAAGAGGGCCTTGGTATCCATGTCAAAGGCACTGACGAGAAGATTAAAGCTGGCGGTAATCGGCGTAGGGGTGGCTGTGGAAGTGGGTGTGGCGGACGTGCTGCTGCTAATAGTAATACCCACGCTACTAATGTGGAATTGGGTATTTTGGTAG___CAGCAGCTGTGGCAACAAATGCAAGCAGCGGTTGTGGAGGGTGTGGTAGTGGCTGTGGAGGATGCGGGGGTAATGCTACTTCAGGGGCGGGTGCAGCTTTAGGTGCGGTAACAAACGCGGGCGGCGGTTGTGGAGGATGTGGAAGTGGCTGTGGAGGATGCGGAGGTAGTGCTACCTCAGGGCCAGGTACAGGTTCAGGTGCCAGAGGAGGCTGTGGAGGAGGGTGCGGAGGGGGATGCGGCGGGGGTGGCGGATGTGGCAGTGGTGTGCTATAAACTGATCATTAATTATTAATGGCTTTTCCTTGTCAATAATGAACATCTTATGTATTTTCTTTGCTCCATTATTATCATATCTTATGTATTTCCTTTGCCCCATTATTATCATAGGGTGTTAAACTCATAGGCATGATTCATCGAGTTTTACTTTTGGTTTCAGCAATGATATTACATCCAATAAATAAGGGCAGCTGCGTTTTCATTATTATGTATTTTCTTTGCTCCATTATTATCATATCTTATGTATTTCCTTTGCTCCATTATTATGACAGGGTGTCCAATAAATAAGGGCAGCGTAATCCCTGCGTTTTTATGT

Fln Alignment:

Contig3236___MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYGKDCKKIYGRILDASFVESFITEADRKQTQDIWKYSYPEEPYELDLSHSVPGNSAGTIFKSMYNIEYDLTDAVRRQSSFFHQVSRPYMSDERFLKGAEERYKGFLYLIKKNRDNSVNCFCVPTYDVDLMWHSHQLQPVAYRRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWETTYGRRYWRAGAMHKGDAPSPVPGPPLSSENSNCVGEPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKHNCPEMEAKEVEITSESQCKQIASFMCEATGDFIFELXXXXXXXXXXXXNGLGRVSIPLQTLLDSTTLSVENWFPLSRNGQRGDSKPISLHIAVSVTPPTTAPYLLWCVRSHCFERKLQFLECIRRIKRAETVMRFLDNHDXXXXXXXXXXXXXXXXSSFLESEEVCLQGLPDKRRILTVYRRNPSSKKLISSVEIVANAEELITVGGTARWAXXXXXXXXXXXXXXXVIKEEPIFELTGNLGKPLRLLSGRKLQYEVKYAKPEIEHEFVTLVRYTRDAPFGQATSLFNWKSGIIEVAQQESVLLVVLISTIISASLTKHQEGLKCTSTPEAEVKTKVFATGN
B8LME0______________MNAVQEEEWRKAQEISISVDLDLISAAKQHLLFLASVDRYRCLYDGPALQRAIYRYEQCWLPLLAEHTESGNAKFQLVVPLDCEWIWHCHRLNPVQYGKDCNKIYGRILDASFVESSIKEADRKQTEEIWKYSYPEEPYELGLSHSVSGNSAGMIFKSMHKIEYDLTDAVRRQSSFFHQVSRPYMFDDRFLKGAEERYKGFLYLIKKNKDSSVNCFCVPTYDVDLMWHSHQLQPVAYTRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWENTYGRRYSRAGAMHKGDAPSPVPSAPLSSENSDCVGKPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKDNCPGMEAKEVEITSESQCKQIASFQCEAIGDFIFELRSRSSRTVKRTSNSLGQVSIPLQTLLDSTTLSVENWFPLSRNGQPGGFKPISLHIAVSVTPPTIAPYLLWSVRSHCFERKFQFLECIRRIKRAEMVMRFVDHDDKEVFIVKTRTTAKPYTSSFLRSEEVSLRGLPDKRQIVTVYQRNPNSKKLISSGETVANAEELITIGGTAKWTLMNNSCSLLLRNLNNISKEEPIFELRGNLGKPLRLLSGRKLQYEVKCAKPEIEHEFVTLVRYTPKAPFGRATSLFNWKSGIIEVAQQESVLLVALLSTVISASLTKHQEGLKCTSTLEERAKMKVFATGS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
9	33	66			0.997452
11		33		66	0.997452
12	33	66			0.997452
15	33		66		0.997452
16	66	33			0.997452
17	33	66			0.997452
19	33			66	0.997452
20	33			66	0.997452
21		33	66		0.997452
22		33	66		0.997452
23		66	33		0.997452
24	33			66	0.997452
25			66	33	0.997452
29		66	33		0.997452
30			33	66	0.997452
401	11		88		0.923564
405	88	11			0.923564
409	87			12	0.992554
463	14		85		0.993533
911	90	10			0.90298
915			10	90	0.90298
916	90		10		0.90298
917	90	10			0.90298
918	90			10	0.90298
919			10	90	0.90298
921		10		90	0.90298
922	10		90		0.90298
963	10		90		0.90298
1379	50		50		1.0
2218		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain