SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3128

Length: 2547 nt

UniGene Fasta

>sp_v3.0_unigene3128
ACTGCTTAAGCAGTGGTATCAACCCAAGAGCAAAAAAGAATTGCTCATTTGAGCCTTTCCAGCTCGATGTTAGTAGGGTTTAAGAGAGGTCGATTGTTAGGGTTTAAGAGAGGTCGATTGTTAGGGTTTAAGAGAGAACTCAGCCCTATTTACCTGTCACGTGCCTCTGAAAGCCAACTTAATATCACAGGTTGCTGCCCGAGTTTGAATCTGAAGCACATACGGACATGTCTACCCCTGGAAAGGAAACGAGAACTCCCGCGCGGAAGAAGAATGAATCCTCCCAATCCGAGCCAGAGGTTCCTGTACAAACTCCTGCTCACAGTAGCAGAAAAGGAAAGAGGCAGCCCGACTTGAGCACTGACCTGCAACCCAGTTCAAAGAAACCATATAACCTGAGGAGTAAATCTTCCTTATGCAATGAAGAGGTTCTTCATCAACTCCTAACCATCAACCACAGAAAAGGAGAAAAGCAGCCGGAGACTGACTCTGACATGCAACCTGATTTAAAGAAATTAAGTCATTTAGGGTTGAAAACATCCTCCTTGCCTGACGAAGAGGAAGAAAAAGAGGGGATTGATGAAGGATTTGAAAATGTGAATAAGACTCTACAAGATAGCAATGAGCTTTCTAAAGATATTAAGGAAGCACAGGTTTGTCAACAAGAAAAAATAGGCATTGATGAGAAAATTGAAAATCCAAATAAAACTCCACAAGATAGCAATGGGATTTCTCAAGATGCTAAAGAAGCACAGGGTTGTCAACAAGAAAAAGATGGGATTGATGAGGAAATTGAAAATGTGAATAAAACTCTACAAGATAGCCATGAGATTTTTCGGGATGCTAAAGAAGCTCAGTATTTGCAGGATTATCAACAAGAAAAGGAAGGCATCGATGAGGAAACTGAAAATGTGAATGAAACTGCACAAGATAACATTGAGCTTTCTCAAGAGGCTAAGGAAGCACAGGTTTGTCAACACGAAAAAGAAGGAATTGATGAGGAAATTAAAAGGTCAATTGAAACTTCACAAGATTGCAGTGAACTATCTCAAGATGCTAAAGAACCACAGGGTTGTCAACAAGAAAAAGATAGGATTGATGAGGAAATTGAAATTGTGAATAAAACTCTACAAGATAGCAATGAGATTTCTCAGGATGCTAAAGAAGCACAGGGCTGTTTTGAAGAAGATGGTACTCCTGAAGAATTGGTTAATGTGGAAGAAGATACTCCAAAAGTTAGCATTCAACTATCTACCAAGAAAAGAAAACATAGGAAACGAAAGTCCTCATCTATGAGGCCCAAAATACCAGTAGCTGCTGGAAGCAAGATTCTGTTTGTGGGAAATCTTCCCTACTCTGTTGACCATGGCAATATGTTAAAATTCTTTGAAGATGTTGGGAGGGTGGTAGATATTCGTATGGCTAAGCGTATTGATGGTTCTATGAAAGGTTTTTGTCATGTGACATTTGAGACTGAAGCAGCAGCTAAGAAGGCCATGGATAAAAATGGTGAAATCTTAGGTGGGCGCAATGTTAAACTAGATTTTGCTAAGGAAATTAGGAATGAGGATGCACAGAACTGCACAGTTCTTGTGAGGGGATTTGAAAAGAGTCAAGAGGAAGAAGTTGTTCGGAAAAGCTTGATGAAGCATTTTGGGAATTGTGGAGGTATCAAAGTTGTTCATCTTCCCAAGGACATCCCATCTGGATGCTTGATGGGTGTTGCTTTTATTGAATTTGAAGACAGTGGATTCCTCTCAAAAGCATTGGAGCTCTGTGGATCAGAATTGGGAAATTGTAAATTGTTTGTTAAGGCAGCTTCGCGGAATGAAGTTCGAACAAACGTCAGCAAAAGGCATCGAAAGAAACATTCAAAAAAAAAGGCTGCAGTGAAGGATACCAAGGAGATCTGTCAATGAAGAGGATGATGTCTAAGCTGTTTATTGCATGCATGCCAACCAGTGGCCCAAGGAATCTCATCACCTGCTTGTTCTTGTCCTTGATGATAGGAGAGCTGTAGGATGACAATATTCTTATTTGAGAGCTTATTCGTGTTCGTTTTTCATTTTGTAGTTCCGGTTTCTCATGGCTTGGTCTTTTATTTTTAATCTCGAATCTTTATATTAATATAAGCATCTTAGAGTTGTTTTGGCACTCCCGGCATTACTCTCTTTTCGTTTTATTGTATTACTTGTACAGATGCTTTCGCACCGTCAATTCTCACTTAATATCCCACTGGCTGAAAACTGGCCATTGGTATATATTAATATCTAAATTAAAATATTGCATTATTTGGGATGGACATCCGAATTCTTTCTTGCCACTTCACATCTTGACAAAACTTCAGTGGAGAAAATGAGATTTGCTATATTGCAATTGATTGAGTTTTCAGTTTTGATTCACATTAGACTCTCTGAGCCATAACTTTAAGAGGTCTTCGTTCACAGACACATCTTTTATTATTGGAATGTTTGTGATTTAGAATGCTCAGGAATCTTTCTGATATAATTTTTAAAGCAACAGTGGAATGTTCAGGTTGGTTTATGG

Ace file of the UniGene sp_v3.0_unigene3128

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tobacco nucleolin [Nicotiana tabacum]	-	-	6.0e-37	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTR2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is longer than subject: 564 - 302

Fln protein: MSTPGKETRTPARKKNESSQSEPEVPVQTPAHSSRKGKRQPDLSTDLQPSSKKPYNLRSKSSLCNEEVLHQLLTINHRKGEKQPETDSDMQPDLKKLSHLGLKTSSLPDEEEEKEGIDEGFENVNKTLQDSNELSKDIKEAQVCQQEKIGIDEKIENPNKTPQDSNGISQDAKEAQGCQQEKDGIDEEIENVNKTLQDSHEIFRDAKEAQYLQDYQQEKEGIDEETENVNETAQDNIELSQEAKEAQVCQHEKEGIDEEIKRSIETSQDCSELSQDAKEPQGCQQEKDRIDEEIEIVNKTLQDSNEISQDAKEAQGCFEEDGTPEELVNVEEDTPKVSIQLSTKKRKHRKRKSSSMRPKIPVAAGSKILFVGNLPYSVDHGNMLKFFEDVGRVVDIRMAKRIDGSMKGFCHVTFETEAAAKKAMDKNGEILGGRNVKLDFAKEIRNEDAQNCTVLVRGFEKSQEEEVVRKSLMKHFGNCGGIKVVHLPKDIPSGCLMGVAFIEFEDSGFLSKALELCGSELGNCKLFVKAASRNEVRTNVSKRHRKKHSKKKAAVKDTKEICQ*

Protein Length: 565

Fln nts: ACTGCTTAAGCAGTGGTATCAACCCAAGAGCAAAAAAGAATTGCTCATTTGAGCCTTTCCAGCTCGATGTTAGTAGGGTTTAAGAGAGGTCGATTGTTAGGGTTTAAGAGAGGTCGATTGTTAGGGTTTAAGAGAGAACTCAGCCCTATTTACCTGTCACGTGCCTCTGAAAGCCAACTTAATATCACAGGTTGCTGCCCGAGTTTGAATCTGAAGCACATACGGAC_-_ATGTCTACCCCTGGAAAGGAAACGAGAACTCCCGCGCGGAAGAAGAATGAATCCTCCCAATCCGAGCCAGAGGTTCCTGTACAAACTCCTGCTCACAGTAGCAGAAAAGGAAAGAGGCAGCCCGACTTGAGCACTGACCTGCAACCCAGTTCAAAGAAACCATATAACCTGAGGAGTAAATCTTCCTTATGCAATGAAGAGGTTCTTCATCAACTCCTAACCATCAACCACAGAAAAGGAGAAAAGCAGCCGGAGACTGACTCTGACATGCAACCTGATTTAAAGAAATTAAGTCATTTAGGGTTGAAAACATCCTCCTTGCCTGACGAAGAGGAAGAAAAAGAGGGGATTGATGAAGGATTTGAAAATGTGAATAAGACTCTACAAGATAGCAATGAGCTTTCTAAAGATATTAAGGAAGCACAGGTTTGTCAACAAGAAAAAATAGGCATTGATGAGAAAATTGAAAATCCAAATAAAACTCCACAAGATAGCAATGGGATTTCTCAAGATGCTAAAGAAGCACAGGGTTGTCAACAAGAAAAAGATGGGATTGATGAGGAAATTGAAAATGTGAATAAAACTCTACAAGATAGCCATGAGATTTTTCGGGATGCTAAAGAAGCTCAGTATTTGCAGGATTATCAACAAGAAAAGGAAGGCATCGATGAGGAAACTGAAAATGTGAATGAAACTGCACAAGATAACATTGAGCTTTCTCAAGAGGCTAAGGAAGCACAGGTTTGTCAACACGAAAAAGAAGGAATTGATGAGGAAATTAAAAGGTCAATTGAAACTTCACAAGATTGCAGTGAACTATCTCAAGATGCTAAAGAACCACAGGGTTGTCAACAAGAAAAAGATAGGATTGATGAGGAAATTGAAATTGTGAATAAAACTCTACAAGATAGCAATGAGATTTCTCAGGATGCTAAAGAAGCACAGGGCTGTTTTGAAGAAGATGGTACTCCTGAAGAATTGGTTAATGTGGAAGAAGATACTCCAAAAGTTAGCATTCAACTATCTACCAAGAAAAGAAAACATAGGAAACGAAAGTCCTCATCTATGAGGCCCAAAATACCAGTAGCTGCTGGAAGCAAGATTCTGTTTGTGGGAAATCTTCCCTACTCTGTTGACCATGGCAATATGTTAAAATTCTTTGAAGATGTTGGGAGGGTGGTAGATATTCGTATGGCTAAGCGTATTGATGGTTCTATGAAAGGTTTTTGTCATGTGACATTTGAGACTGAAGCAGCAGCTAAGAAGGCCATGGATAAAAATGGTGAAATCTTAGGTGGGCGCAATGTTAAACTAGATTTTGCTAAGGAAATTAGGAATGAGGATGCACAGAACTGCACAGTTCTTGTGAGGGGATTTGAAAAGAGTCAAGAGGAAGAAGTTGTTCGGAAAAGCTTGATGAAGCATTTTGGGAATTGTGGAGGTATCAAAGTTGTTCATCTTCCCAAGGACATCCCATCTGGATGCTTGATGGGTGTTGCTTTTATTGAATTTGAAGACAGTGGATTCCTCTCAAAAGCATTGGAGCTCTGTGGATCAGAATTGGGAAATTGTAAATTGTTTGTTAAGGCAGCTTCGCGGAATGAAGTTCGAACAAACGTCAGCAAAAGGCATCGAAAGAAACATTCAAAAAAAAAGGCTGCAGTGAAGGATACCAAGGAGATCTGTCAATGA___AGAGGATGATGTCTAAGCTGTTTATTGCATGCATGCCAACCAGTGGCCCAAGGAATCTCATCACCTGCTTGTTCTTGTCCTTGATGATAGGAGAGCTGTAGGATGACAATATTCTTATTTGAGAGCTTATTCGTGTTCGTTTTTCATTTTGTAGTTCCGGTTTCTCATGGCTTGGTCTTTTATTTTTAATCTCGAATCTTTATATTAATATAAGCATCTTAGAGTTGTTTTGGCACTCCCGGCATTACTCTCTTTTCGTTTTATTGTATTACTTGTACAGATGCTTTCGCACCGTCAATTCTCACTTAATATCCCACTGGCTGAAAACTGGCCATTGGTATATATTAATATCTAAATTAAAATATTGCATTATTTGGGATGGACATCCGAATTCTTTCTTGCCACTTCACATCTTGACAAAACTTCAGTGGAGAAAATGAGATTTGCTATATTGCAATTGATTGAGTTTTCAGTTTTGATTCACATTAGACTCTCTGAGCCATAACTTTAAGAGGTCTTCGTTCACAGACACATCTTTTATTATTGGAATGTTTGTGATTTAGAATGCTCAGGAATCTTTCTGATATAATTTTTAAAGCAACAGTGGAATGTTCAGGTTGGTTTATGG

Fln Alignment:

Contig3128___LFVGNLPYSVDHGNMLKFFEDVGRVVDIRMAKRID-GSMKGFCHVTFETEAAAKKAMDKNGEILGGRNVKLDFAKEIRNEDAQNCTVLV--------RGFEKSQEEEVVRKSLMKHFGNCGGIKVVHLPKDIPSGCLMGVAFIEFEDSGFLSKALEL
A9NTR2______________VYVGGIPYYSNEDDIRSFFEGCGTVTEVDCMTFPDSGKFRGIALISFKTKAAATRALALDGADMGGRFLKIQQCRTHRSSKNDKPAGFVPTKVDKSNRAYIGNLAWDIAEDDLKVVFGDC-KISAIRLGKDKTTGEFKGYGHIDFADEVSLAMALKL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1871	10			90	0.90298
1875	85			14	0.993533
1876	85			14	0.993533
2095	10			90	0.90298
2097	12			87	0.992554
2137	10	90			0.90298
2138			10	90	0.90298
2140	90	10			0.90298
2142	90	10			0.90298
2155	11	88			0.923564
2400		25		75	1.0
2414		80		20	0.995493
2416		20	80		0.995493
2454		75		25	0.996473
2463		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain