SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3091

Length: 2684 nt

UniGene Fasta

>sp_v3.0_unigene3091
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGGTGATGGTGATAAGCAATGTCGGCTCTTTCAAACCTGGCTGGTTGAGACATGCTGGCTGAGACATTGCTTTTCATGCTCTGCCTCTTCAAGGGTCTTGTATGCAGAATTGGGCTTTAATATAAACTTTCCGGAAGTTGTGAGAGCCGATGGATTGATGTCGAGTCTTAAAAGTTATTGTGGTATTTGATTGATCTGTGCACCCAATTTTATGTCCTGCTTTAAATTGTTGTTAATTCTGTGATTTGATTGAGTCGACCTTCCGAATTCAGTTTTTGAGATTCAATTTTGTCTATAAATATTGGAAAATTTGAGGAAATTTGATCGGTGGAGTCGGTTAAGAAGGTTGTGGTCGGGTGTTAAATCAAGTGGGCTTTCTTCGCAAAAACCTGGGTTCTCTTTCCCCAATAACATGCAACTGTGTTAATGCGACCAATTATTGTGCTCTCTTGTAATGTCTCAACGTAGGCAGCGGTTTGTCCTAGGTGGTGTCTCTCAATGGATGACGCGAAGTGCAAGTTCTGGGTGATTTAGATGGAACATATAGCAATCAGAATATATATACAAATTAATTCTATTTGTCAGTTGAAGTAGAAATATGAGAAGAGTTTCATGAAGCCGGGGGTTTTGATAATTTCCACCTTCAAATTTCTAGTATGACGGAGGCCAGGCTTGGTTGACATCAAGTTGGTCAATTTGTATATTTGTGAGCGCATTTTGAACATGATAGCAATGCTTGCGACACAGTGGCTAATGCAGGGGCCCTATAGGTTTCAGAAATATATGATGGACACCTACGTCAAAATACTACCTTTTTTCCTTTGCAGTCCCATCATTATACGAGATCTGGATTGAAGGTTGAACTCCAAAATTTCGAAGTTGTTTCTAAAATATAGTGTTTTACAGAAGTTATTAGGTCTTGATGTTTCTGATGAGCACGATCTGCTGCTGAGGGGGGTTTAAGAATATCCATTAGGTAGCATTTATGGATTCATCAAGTCTGTCTAGAGAAACTAGTCCACCTGGTTCAGATTCAGGTGTGGGTGGGAGTGGAAGACCAAGTGAAGCAATTGGATATAGTCCTGCACCGTTGTTTTCATGTGATTACTATGAAGTAGAACATGTCCGTAATATTGCACAAGCCTTGCTTTCAGGCTTGGCTGCTGCATGTGTGGAAAGTACCATGGGAGACCTCTTCAAGACTCCGGCATCTGTAGCTGCCAATGTGAGGAAGGAAATGATTGAATATCTTCGGCAACAGAGTGAAGTCTATCCTACACAATATGTGATGATTGTCGGAAATTCGGGCTCTCCAGAAATCCCTGTTGATGTGGTTGGTGACCTGCTTGACAACTTTGTGCACGATAAGAAGAAATGTATGTACCAGCATGTCTGGCTGGCTTCTCAGTGAACAGAAGGAAGACAAGGTTGATGACTTTGTTGAAGAACTGGAGACAATGGGCTTTTGGGTGAAGGGGCGAAGAGAAAATTTAGCAAAGGATCTCTTGAAGAGCATTGACCTGAGCAATGCCTACCACTGCGAGATGAAGTTTGACTCTAGTGAAGAACTTGCCTTGCACAAAAGTAAGTGCCCCCTGCGACCTGTAAATTGTGCAAACGAGGGATGCAGGGAAGTATTTTCTTCCTTGTATGCAAAAAAGCACGATGATACATGTCCTTTAAAACTGGTCCCTTGTGAGCAGAATTGCTCCGCAATGGTGAACAGGTCTGAAATGGATAGGCACTGCATAACAGTATGCCCTATGAAAGTTGTTAATTGTCCATTTTATCAAGTTGGCTGTTTATCCACTATACCTCAGAGTGCAGTTGAGGACCATTGTGCGGGATTTCTACAGTCACATTTGTTTTATGTCCTTCAAATGCTACATAAGCAGGAAGCATCAGTTGGAGATCTGACACAACGTGTGATATTGCTGGAACAGTCTCTCTCTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAGAGAGACTGAAAATTGCAAGGAATATAAACTGGATAATTTATTCTCCACTTGGATTTGAGCAGGAAAAGGTCATTAAAGGTGAATGGAATAAAAACGCTTTCAAGGCAAGCTGCATGACAGATAAAGAATCCTATATAATCGGCTTATATGATTTTGGAATCAATTCACTTGGTCTTTGAGATCAAAATGTCTTATTGCTGATTTAGAACTAACAAAATGAGAAGGGGATGCCCAGAAAAGGTACAGTTGCAAGCCATGTTGGATACTATTTCTTGCATCCACCTATATAAAACTTCTTTTGTTCTTTGTTTAGAGTTGTATTCTTAGCTTATTTTGAATTTTAATAAATTCATATTCTTTGGACGATTGACAAAAACAAGGGTGCAGCAGCATCCAAAAAGTTTCCTTTGTAGTTGGGGAAAAAGTTCCTCACTTTTCTTTAGTCGGAGCGGTGCAAATTATTTCAAGTTTTGCATTTCAATTG

Ace file of the UniGene sp_v3.0_unigene3091

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zf-TRAF domain containing protein	-	-	3.0e-10	35%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	38%

Source	Gene names
Sma3	At3g11950; F26K24.24; GSVIVT00025450001; H9-8; LOC_Os12g08070; OJ1058_F07.14; OSJNBa0060B20.16; Os02g0605500; Os04g0218900; Os12g0181300; OsI_07987; OsI_19388; OsI_37695; OsI_37696; OsJ_07445; OsJ_13858; OsJ_13868; OsJ_17984; OsJ_35436; PHYPADRAFT_174203;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11950.1	TRAF-like superfamily protein chr3:3783273-3785098 REVERSE LENGTH=572	46%
RefSeq	Arabidopsis thaliana	NP_187801.3	homogentisate solanesyltransferase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002322745.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A9REQ2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 252 aas, putative chimeric sequence, your sequence is shorter than subject: 142 - 373

Fln protein: MDSSSLSRETSPPGSDSGVGGSGRPSEAIGYSPAPLFSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSPEIPVDVVGDLLDNFVHDKKKCMYQHVWLASQ*

Protein Length: 143

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGGTGATGGTGATAAGCAATGTCGGCTCTTTCAAACCTGGCTGGTTGAGACATGCTGGCTGAGACATTGCTTTTCATGCTCTGCCTCTTCAAGGGTCTTGTATGCAGAATTGGGCTTTAATATAAACTTTCCGGAAGTTGTGAGAGCCGATGGATTGATGTCGAGTCTTAAAAGTTATTGTGGTATTTGATTGATCTGTGCACCCAATTTTATGTCCTGCTTTAAATTGTTGTTAATTCTGTGATTTGATTGAGTCGACCTTCCGAATTCAGTTTTTGAGATTCAATTTTGTCTATAAATATTGGAAAATTTGAGGAAATTTGATCGGTGGAGTCGGTTAAGAAGGTTGTGGTCGGGTGTTAAATCAAGTGGGCTTTCTTCGCAAAAACCTGGGTTCTCTTTCCCCAATAACATGCAACTGTGTTAATGCGACCAATTATTGTGCTCTCTTGTAATGTCTCAACGTAGGCAGCGGTTTGTCCTAGGTGGTGTCTCTCAATGGATGACGCGAAGTGCAAGTTCTGGGTGATTTAGATGGAACATATAGCAATCAGAATATATATACAAATTAATTCTATTTGTCAGTTGAAGTAGAAATATGAGAAGAGTTTCATGAAGCCGGGGGTTTTGATAATTTCCACCTTCAAATTTCTAGTATGACGGAGGCCAGGCTTGGTTGACATCAAGTTGGTCAATTTGTATATTTGTGAGCGCATTTTGAACATGATAGCAATGCTTGCGACACAGTGGCTAATGCAGGGGCCCTATAGGTTTCAGAAATATATGATGGACACCTACGTCAAAATACTACCTTTTTTCCTTTGCAGTCCCATCATTATACGAGATCTGGATTGAAGGTTGAACTCCAAAATTTCGAAGTTGTTTCTAAAATATAGTGTTTTACAGAAGTTATTAGGTCTTGATGTTTCTGATGAGCACGATCTGCTGCTGAGGGGGGTTTAAGAATATCCATTAGGTAGCATTT_-_ATGGATTCATCAAGTCTGTCTAGAGAAACTAGTCCACCTGGTTCAGATTCAGGTGTGGGTGGGAGTGGAAGACCAAGTGAAGCAATTGGATATAGTCCTGCACCGTTGTTTTCATGTGATTACTATGAAGTAGAACATGTCCGTAATATTGCACAAGCCTTGCTTTCAGGCTTGGCTGCTGCATGTGTGGAAAGTACCATGGGAGACCTCTTCAAGACTCCGGCATCTGTAGCTGCCAATGTGAGGAAGGAAATGATTGAATATCTTCGGCAACAGAGTGAAGTCTATCCTACACAATATGTGATGATTGTCGGAAATTCGGGCTCTCCAGAAATCCCTGTTGATGTGGTTGGTGACCTGCTTGACAACTTTGTGCACGATAAGAAGAAATGTATGTACCAGCATGTCTGGCTGGCTTCTCAGTGA___ACAGAAGGAAGACAAGGTTGATGACTTTGTTGAAGAACTGGAGACAATGGGCTTTTGGGTGAAGGGGCGAAGAGAAAATTTAGCAAAGGATCTCTTGAAGAGCATTGACCTGAGCAATGCCTACCACTGCGAGATGAAGTTTGACTCTAGTGAAGAACTTGCCTTGCACAAAAGTAAGTGCCCCCTGCGACCTGTAAATTGTGCAAACGAGGGATGCAGGGAAGTATTTTCTTCCTTGTATGCAAAAAAGCACGATGATACATGTCCTTTAAAACTGGTCCCTTGTGAGCAGAATTGCTCCGCAATGGTGAACAGGTCTGAAATGGATAGGCACTGCATAACAGTATGCCCTATGAAAGTTGTTAATTGTCCATTTTATCAAGTTGGCTGTTTATCCACTATACCTCAGAGTGCAGTTGAGGACCATTGTGCGGGATTTCTACAGTCACATTTGTTTTATGTCCTTCAAATGCTACATAAGCAGGAAGCATCAGTTGGAGATCTGACACAACGTGTGATATTGCTGGAACAGTCTCTCTCTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAGAGAGACTGAAAATTGCAAGGAATATAAACTGGATAATTTATTCTCCACTTGGATTTGAGCAGGAAAAGGTCATTAAAGGTGAATGGAATAAAAACGCTTTCAAGGCAAGCTGCATGACAGATAAAGAATCCTATATAATCGGCTTATATGATTTTGGAATCAATTCACTTGGTCTTTGAGATCAAAATGTCTTATTGCTGATTTAGAACTAACAAAATGAGAAGGGGATGCCCAGAAAAGGTACAGTTGCAAGCCATGTTGGATACTATTTCTTGCATCCACCTATATAAAACTTCTTTTGTTCTTTGTTTAGAGTTGTATTCTTAGCTTATTTTGAATTTTAATAAATTCATATTCTTTGGACGATTGACAAAAACAAGGGTGCAGCAGCATCCAAAAAGTTTCCTTTGTAGTTGGGGAAAAAGTTCCTCACTTTTCTTTAGTCGGAGCGGTGCAAATTATTTCAAGTTTTGCATTTCAATTG

Fln Alignment:

Contig3091___SPAPLFSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSPEI-------PVDVVGDLLDNFVHDKK
A9REQ2______________SSSELFECDFCDVEEVKRLSHALLVALAAACVEKTSGTLSQRVA-VLPGVKKEMLEYLNQQSQTYANSSSSLQRSNSLQHVFVSQVTYPTHIVKDMLETFIKSKR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
757	33		66		1.0
769		33		66	1.0
789		66	33		1.0
1922			20	80	0.995493
2038		12	87		0.992554
2089			11	88	0.923564
2090			11	88	0.923564
2092	22		77		0.999999
2097	10	90			0.90298
2099			10	90	0.90298
2100		90	10		0.90298
2101	90		10		0.90298
2168	85		14		0.993533
2220	28		71		1.0
2282		28	71		1.0
2296		57		42	1.0
2341		62	37		1.0
2357			85	14	0.993533
2368	85			14	0.993533
2439	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain