SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3058

Length: 3740 nt

UniGene Fasta

>sp_v3.0_unigene3058
AGGAGGGGTTTCAGCCAGCGCAGATGCTTGCTTTTATGCAAAGGATGGCTGTGGCTCCTAGGTGTGGGGAGGACAGGATGATATTAGGGATCAAGTATGCAGCCCAAGTCCGAGCATACCGAGCTGCTACCGCTGTTCCTGTGACTGCTGAGTATCGACAAGCCTTGAGGCTTTCACAAAGAAGCTGTTTGCAAGATGTTGCTGATTCCGAGGCTGTTTCGGATCCACATGTGGTCTTCGCAGACAAAGGTACATATAGGGAGGCACCGCTACAGGCACCTACAAAGGATGAGGATGGGCATTCTGAAACCATGGATCAAGGAAGGAAGTCAGTTGGGGAAGGTGAAACCAGTTATAAGGAAGATATATTCTTGTTCAAAAGGCGAGATATAGTTGATGGAAATCAGTCTTCTGCAAGTGGAGGATCTTTGATGAATGGCGTTGAAAAGATTGAAATTAGTGAACAAATTACATTTTTGGAGGAAGGAGAAGAAACAGATGACATTAGTAAGTATGTTTTTCAAAAGAGAAGCCAATGGAAGGAGGCCCAGTCTGCTGATAAGAAAAAAGGAAAGAAGAAGGCAGAGGAGGGCTTGTCTGTAGAGGATAATGATATCCAAGAAGTGCAGGGAAGAAAAATTGAAACTACTAAGCTGACTCTACGGCTGGATAAAAAGAATGTGGATAAGTATCCTCTGAAACGAAGGGCAAGTGAAACTGAGGGATCTACTGGTTGCTATTTGAATACTGATTTGGGGGTTTCTGATAGAGGTGGTTTGAAATTCAGAAAGATAGGCATGACAAAAGAGTCTCATGTTAATGGTAAATCAATTCCAGAGAAATCAAGGACAAATCGAAGAAGCAATACAATGGGTGAAGTTGATACTGAAGGGCATAACTTATTCGAGAAGAAAGAAGCAAATGAACATTCAACTGAATCAACCCAAATTGAGGTTGGGCTAGCAGGTACAAATGCAAGCAGAACAGATTTCAAAAATAACATGGACAATGGTTTTCAAGATGAAACTGAAGCAGCAGTAGATGTGCATATTCAAAAGGCAGATGGTATTGCCACATTGAAGGTTCCTGAATGGCAATCTGACTTGGATCATGATTCTCAGCTTGCAGATTTGCCTTCAAATCATGGGGGTTACTCAAGTCTCAAGGATAAAACTTGTTTAGATAAATTGGAAATTCTTACAACAGTTGCTGCTGTAGAGGGTCAGGGAATAGATAGCTATCCCAGACGTTCATCAAAGGATGCCAAGGTGAATCTCCTAAAAAAGGATGAGGGCATCACTAGTTCTGGCAAAATTGACATGTCCAAAATACCTGAAGGCCATCATGTTGAAGGACATTTTGGTCTGCCTCATGTTGATAAATTTATCCCAAGGACACATGAAGATGTTGGCAATATTCACATAGCTTCTGAAAAGGCCTCCATTGGAGGAATATTTGAAACTACTGAAAGTTATTTAGGAAGCAAAACCAATGTGGCTGCTGGAGTTGCTTTAACGTCTGCAAATGAAGCAATGGTGGATGTTTTCCCAACTACGCAGTCTTTGCCCAATTTAGATCAGACAGTTGGGAAGAAGATAGTACAAGAAACAAGTCATGATGAAATTAATTCAATGCAGAACATTCTCCCACAGAATGCAATGAATTTGTGTCCTAATCAACTGTCTCTTGAAAAGCAGGTTACAGTGATTGGTGACATGCAACGGCTTGTAGATCCAGTGAAGGATGCCTCTAGAGGTCTAGCTGATGTTATTCATGCTTCTCGTCATCATGAAGGGGGTGGAATTAAAGATGGTGATCAAGGATGTTCAACTTTACTGCCAGATCAAAGTAAATGTCTAAAGGTCATTCAGAGAGATGTGGATATGGCATGTTCTGCATCTCTTCTTCATCAACTTGTGGAGGATTTATTGATCCTTGCAGTAGATCCATTATATGGCATTGAAAGAGGCCGCCCAGACGAAATATGCCAAGCATTTTCGATTTTCAGGTCATTAACATATGAGCAAATTCAAGCTTCATCATATTTAGGAGAAACATCTAAGAATGTCGAACCTTGTATTCATATCGAAGGTGAAGACGAGAAGAAAGAGGTGGAGGTGGTAGAAGGACCTTTGATTTCCTGGTCGGGTGATAAAAATGATAATTTTGAGCTTGCATCTAGCAAAGTAGTGGTTCAGTCAGGATCAAATGGGGTTGCTATTGACGTGTCTTCCGATTCAAAATCCATTAGTAAGCTTTCCAGTATTATCAGGAACCAAAAGCATGAAGCAGACACTCAAGCAAGGGAACGGAAAAAAAGAAAAAATGATAATCAGGCAGACAGTTCTTCAAAAACAGCAAAGAAATTACAGCCATTCAGTTTTCCGGATAAGTTTGGCTCAAAACAAACTACAAACAGATTATCTGGCATGTCTGCAGGTGATTCCAGAGAATCAGTTCAACAAAGAAAGAAGACTAGCCGGTCATCTGATTCTCATAAAACTCTTGAGGAGCCGATGGCCCTCTGTATGAAATTTCCACAGGGATTTGCCTTGCCATCGGAAGCACAGTTAAAGGCACGTTTTGTACGTTTTGGGCAATTAGATGTTTCAGGAACCAGAATTTACTGTCATACAGGCTGTGCCCGAGTGGTTTTTAAGTGTGCTTCGGATGCAGGAGCAGCTTATAAATATGCAACTCGAAATAGCTTGTTTGGTCAAGCTAATGTGAAGTTTAGGCTCAAGCAAGTCCCTCAACCGAAAGAAGAAACTGTTCTATTGCAGAGCAGCTCTGAATCACTGAAGAAGGGAACTGTGGCCTTCCAGAGCACTTTTGAACCCCTGAAAGAGAGAAAACTAGGTAGTGAAGAAGTGCCTTCCCCGTTGCCAGATACGTTGAAAACAAGTATTGAAGATGTACCGTCTTCATTGCCAGATAATGAAATACGAGATTTGGGTCCTTTAGGGTCATCTAATGGGCCTAAGGTTGAAGAAGCAGGGGGAGATTGCACTCCAACATACGAGGTTCAGTCAGCACCGTTAGTCCAGTTGAAGTCCTGCTTAAAGAAGCCAGATGAATTGGGGAATAACAGTGCTAAAGAATCTGCACGTGTAACATTCCTATTAGAGAAGGAACTTAGGTCTGACCCACGTGATTGGAAGAATGGGTTCTCTCAAATTGAAAATTCTAGCGATTCTGTATCAGCTGCAGGTCCACTTCCTGCTAACAATAGTGTGGTAGCTCCTGATCTGCCGGATGTTTCACATCAAATGCTATACCTTCTGAAGAAATGTAGTGAGGTAGTCGGTGATGTTAGAAGCTCTCTAGGATTTGTACCATATCATTATTATTCAGTTTAAATACATAAGGAGTTTTTTCAAAAAAATTCATATGCGCTTATAGCTGTACTGTATTCTGATTATTTGCTGAGGCAATAGTACGAAGATTCCGAGAAGTTCAATACAACTGGCATTCTCTGACTTCTGAGATGAAACTTGAAAGTTTGCTGAATGAAGGTTCCTGCACTAAAATATTCTTTTAGCAGCAGAAGTTTAAAAGGGTATCATATCCTGGCAGTTGTTTCCATCGTAATAAAGCATACCATTGTAATGCTTTGGTGATTGCACGATTATCTTTTCAATTTGGTGTTTTTGTAGTAACAAGTTTGAGGGAACCTCCCTTAGCCCATGTGTATTCCAATGATATCTTCGGATCAACATGAGTAATTCTGACTATTTGGT

Ace file of the UniGene sp_v3.0_unigene3058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PWWP [Medicago truncatula]	-	-	3.0e-25	27%
FL-Next	tr=DNA (Cytosine-5)-methyltransferase 3A; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	27%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A2Q337

Fln msg: No stop codon before M and low homology subject,

Fln protein: MLAFMQRMAVAPRCGEDRMILGIKYAAQVRAYRAATAVPVTAEYRQALRLSQRSCLQDVADSEAVSDPHVVFADKGTYREAPLQAPTKDEDGHSETMDQGRKSVGEGETSYKEDIFLFKRRDIVDGNQSSASGGSLMNGVEKIEISEQITFLEEGEETDDISKYVFQKRSQWKEAQSADKKKGKKKAEEGLSVEDNDIQEVQGRKIETTKLTLRLDKKNVDKYPLKRRASETEGSTGCYLNTDLGVSDRGGLKFRKIGMTKESHVNGKSIPEKSRTNRRSNTMGEVDTEGHNLFEKKEANEHSTESTQIEVGLAGTNASRTDFKNNMDNGFQDETEAAVDVHIQKADGIATLKVPEWQSDLDHDSQLADLPSNHGGYSSLKDKTCLDKLEILTTVAAVEGQGIDSYPRRSSKDAKVNLLKKDEGITSSGKIDMSKIPEGHHVEGHFGLPHVDKFIPRTHEDVGNIHIASEKASIGGIFETTESYLGSKTNVAAGVALTSANEAMVDVFPTTQSLPNLDQTVGKKIVQETSHDEINSMQNILPQNAMNLCPNQLSLEKQVTVIGDMQRLVDPVKDASRGLADVIHASRHHEGGGIKDGDQGCSTLLPDQSKCLKVIQRDVDMACSASLLHQLVEDLLILAVDPLYGIERGRPDEICQAFSIFRSLTYEQIQASSYLGETSKNVEPCIHIEGEDEKKEVEVVEGPLISWSGDKNDNFELASSKVVVQSGSNGVAIDVSSDSKSISKLSSIIRNQKHEADTQARERKKRKNDNQADSSSKTAKKLQPFSFPDKFGSKQTTNRLSGMSAGDSRESVQQRKKTSRSSDSHKTLEEPMALCMKFPQGFALPSEAQLKARFVRFGQLDVSGTRIYCHTGCARVVFKCASDAGAAYKYATRNSLFGQANVKFRLKQVPQPKEETVLLQSSSESLKKGTVAFQSTFEPLKERKLGSEEVPSPLPDTLKTSIEDVPSSLPDNEIRDLGPLGSSNGPKVEEAGGDCTPTYEVQSAPLVQLKSCLKKPDELGNNSAKESARVTFLLEKELRSDPRDWKNGFSQIENSSDSVSAAGPLPANNSVVAPDLPDVSHQMLYLLKKCSEVVGDVRSSLGFVPYHYYSV*

Protein Length: 1113

Fln nts: AGGAGGGGTTTCAGCCAGCGCAG_-_ATGCTTGCTTTTATGCAAAGGATGGCTGTGGCTCCTAGGTGTGGGGAGGACAGGATGATATTAGGGATCAAGTATGCAGCCCAAGTCCGAGCATACCGAGCTGCTACCGCTGTTCCTGTGACTGCTGAGTATCGACAAGCCTTGAGGCTTTCACAAAGAAGCTGTTTGCAAGATGTTGCTGATTCCGAGGCTGTTTCGGATCCACATGTGGTCTTCGCAGACAAAGGTACATATAGGGAGGCACCGCTACAGGCACCTACAAAGGATGAGGATGGGCATTCTGAAACCATGGATCAAGGAAGGAAGTCAGTTGGGGAAGGTGAAACCAGTTATAAGGAAGATATATTCTTGTTCAAAAGGCGAGATATAGTTGATGGAAATCAGTCTTCTGCAAGTGGAGGATCTTTGATGAATGGCGTTGAAAAGATTGAAATTAGTGAACAAATTACATTTTTGGAGGAAGGAGAAGAAACAGATGACATTAGTAAGTATGTTTTTCAAAAGAGAAGCCAATGGAAGGAGGCCCAGTCTGCTGATAAGAAAAAAGGAAAGAAGAAGGCAGAGGAGGGCTTGTCTGTAGAGGATAATGATATCCAAGAAGTGCAGGGAAGAAAAATTGAAACTACTAAGCTGACTCTACGGCTGGATAAAAAGAATGTGGATAAGTATCCTCTGAAACGAAGGGCAAGTGAAACTGAGGGATCTACTGGTTGCTATTTGAATACTGATTTGGGGGTTTCTGATAGAGGTGGTTTGAAATTCAGAAAGATAGGCATGACAAAAGAGTCTCATGTTAATGGTAAATCAATTCCAGAGAAATCAAGGACAAATCGAAGAAGCAATACAATGGGTGAAGTTGATACTGAAGGGCATAACTTATTCGAGAAGAAAGAAGCAAATGAACATTCAACTGAATCAACCCAAATTGAGGTTGGGCTAGCAGGTACAAATGCAAGCAGAACAGATTTCAAAAATAACATGGACAATGGTTTTCAAGATGAAACTGAAGCAGCAGTAGATGTGCATATTCAAAAGGCAGATGGTATTGCCACATTGAAGGTTCCTGAATGGCAATCTGACTTGGATCATGATTCTCAGCTTGCAGATTTGCCTTCAAATCATGGGGGTTACTCAAGTCTCAAGGATAAAACTTGTTTAGATAAATTGGAAATTCTTACAACAGTTGCTGCTGTAGAGGGTCAGGGAATAGATAGCTATCCCAGACGTTCATCAAAGGATGCCAAGGTGAATCTCCTAAAAAAGGATGAGGGCATCACTAGTTCTGGCAAAATTGACATGTCCAAAATACCTGAAGGCCATCATGTTGAAGGACATTTTGGTCTGCCTCATGTTGATAAATTTATCCCAAGGACACATGAAGATGTTGGCAATATTCACATAGCTTCTGAAAAGGCCTCCATTGGAGGAATATTTGAAACTACTGAAAGTTATTTAGGAAGCAAAACCAATGTGGCTGCTGGAGTTGCTTTAACGTCTGCAAATGAAGCAATGGTGGATGTTTTCCCAACTACGCAGTCTTTGCCCAATTTAGATCAGACAGTTGGGAAGAAGATAGTACAAGAAACAAGTCATGATGAAATTAATTCAATGCAGAACATTCTCCCACAGAATGCAATGAATTTGTGTCCTAATCAACTGTCTCTTGAAAAGCAGGTTACAGTGATTGGTGACATGCAACGGCTTGTAGATCCAGTGAAGGATGCCTCTAGAGGTCTAGCTGATGTTATTCATGCTTCTCGTCATCATGAAGGGGGTGGAATTAAAGATGGTGATCAAGGATGTTCAACTTTACTGCCAGATCAAAGTAAATGTCTAAAGGTCATTCAGAGAGATGTGGATATGGCATGTTCTGCATCTCTTCTTCATCAACTTGTGGAGGATTTATTGATCCTTGCAGTAGATCCATTATATGGCATTGAAAGAGGCCGCCCAGACGAAATATGCCAAGCATTTTCGATTTTCAGGTCATTAACATATGAGCAAATTCAAGCTTCATCATATTTAGGAGAAACATCTAAGAATGTCGAACCTTGTATTCATATCGAAGGTGAAGACGAGAAGAAAGAGGTGGAGGTGGTAGAAGGACCTTTGATTTCCTGGTCGGGTGATAAAAATGATAATTTTGAGCTTGCATCTAGCAAAGTAGTGGTTCAGTCAGGATCAAATGGGGTTGCTATTGACGTGTCTTCCGATTCAAAATCCATTAGTAAGCTTTCCAGTATTATCAGGAACCAAAAGCATGAAGCAGACACTCAAGCAAGGGAACGGAAAAAAAGAAAAAATGATAATCAGGCAGACAGTTCTTCAAAAACAGCAAAGAAATTACAGCCATTCAGTTTTCCGGATAAGTTTGGCTCAAAACAAACTACAAACAGATTATCTGGCATGTCTGCAGGTGATTCCAGAGAATCAGTTCAACAAAGAAAGAAGACTAGCCGGTCATCTGATTCTCATAAAACTCTTGAGGAGCCGATGGCCCTCTGTATGAAATTTCCACAGGGATTTGCCTTGCCATCGGAAGCACAGTTAAAGGCACGTTTTGTACGTTTTGGGCAATTAGATGTTTCAGGAACCAGAATTTACTGTCATACAGGCTGTGCCCGAGTGGTTTTTAAGTGTGCTTCGGATGCAGGAGCAGCTTATAAATATGCAACTCGAAATAGCTTGTTTGGTCAAGCTAATGTGAAGTTTAGGCTCAAGCAAGTCCCTCAACCGAAAGAAGAAACTGTTCTATTGCAGAGCAGCTCTGAATCACTGAAGAAGGGAACTGTGGCCTTCCAGAGCACTTTTGAACCCCTGAAAGAGAGAAAACTAGGTAGTGAAGAAGTGCCTTCCCCGTTGCCAGATACGTTGAAAACAAGTATTGAAGATGTACCGTCTTCATTGCCAGATAATGAAATACGAGATTTGGGTCCTTTAGGGTCATCTAATGGGCCTAAGGTTGAAGAAGCAGGGGGAGATTGCACTCCAACATACGAGGTTCAGTCAGCACCGTTAGTCCAGTTGAAGTCCTGCTTAAAGAAGCCAGATGAATTGGGGAATAACAGTGCTAAAGAATCTGCACGTGTAACATTCCTATTAGAGAAGGAACTTAGGTCTGACCCACGTGATTGGAAGAATGGGTTCTCTCAAATTGAAAATTCTAGCGATTCTGTATCAGCTGCAGGTCCACTTCCTGCTAACAATAGTGTGGTAGCTCCTGATCTGCCGGATGTTTCACATCAAATGCTATACCTTCTGAAGAAATGTAGTGAGGTAGTCGGTGATGTTAGAAGCTCTCTAGGATTTGTACCATATCATTATTATTCAGTTTAAATACATAAGGAGTTTTTTCAAAAAAATTCATATGCGCTTATAGCTGTACTGTATTCTGATTATTTGCTGAGGCAATAGTACGAAGATTCCGAGAAGTTCAATACAACTGGCATTCTCTGACTTCTGAGATGAAACTTGAAAGTTTGCTGAATGAAGGTTCCTGCACTAAAATATTCTTTTAGCAGCAGAAGTTTAAAAGGGTATCATATCCTGGCAGTTGTTTCCATCGTAATAAAGCATACCATTGTAATGCTTTGGTGATTGCACGATTATCTTTTCAATTTGGTGTTTTTGTAGTAACAAGTTTGAGGGAACCTCCCTTAGCCCATGTGTATTCCAATGATATCTTCGGATCAACATGAGTAATTCTGACTATTTGGT

Fln Alignment:

Contig3058___QLVEDLLILAVDPLYGIERGRPDEICQAFSIFRSLTYEQIQASSYLGETSKNVEPCIHIXXXXXXXXXXXXXXPLISWSGDKNDNFELASS-KVVVQSGSNGVAXXXXXXXXXXXXXXXXXRNQKHEADTQA---------RERKKRKNDNQADSSSKTAKKLQPFSFPDKFGSKQTTNRLSGMSAGDSRESVQQ------RKKTSRSSDSHKTLEEPMALCMKFPQGFALPSEAQLKARFVRFGQLDVSGTRIYCHTGCARVVFKCASDAGAAYKYATRN-SLFGQANVKFRLKQVPQPKEETVLLQSSSESLK-KGTVAFQSTFEPLKERKLGSEEVPSPLPDTLKTSIEDVPSSLPDNEIRDLGPLGSSNGPKVEEAGGDCTPTYEVQSAP--LVQLKSCLKKPDELGNNS------------------AKESARVTFLLEKE--LRSDPRDWKNGFSQIENSSDSVSAAGPLPANNSVVAPDLP----DVSHQMLYLLKKCSEVVGDVRSSLGFVPYH
A2Q337______________QLLGDLQALALNPFHGIERKIPVGVRQFFLRFRSLVYQKSLASS---PPTENEAPEVRVTKSTAD----------VKISDNPNDHVRASPLVKPAKHVRPNDPAKAGRKRGPSDRQEEIAAKRLKKIKDIKALAADKTAANQKTSEARREDKAASSQKTFEARRE----DKAASSQKT---SESRREDGKEPVSQVPSKFVKADSARKMDRPSKTVQPTTLVIKFPPQTSLPSVAELKARFARFGPMDQSGFRIFWKSSTCRVVFLYKSDAQAAYKFSVGNPSLFGSTGVTCLLREIG---------DSASEATKVRGDDGINET-----------PRVKDPAVAQKQTSVSSQKPLLPQPTIQLKSILKKSTGDESGQGTGNGSSSKGNSRVKFMLVGEESNRGEPLMVGNKNNNANLSDAGAPSVAMDFISKNIQKVTTTTSQPPLLPTPPQFLKTPQHNLRNSELATTSRNNPNFNSTTTASSATVTSVDISHQMITLLTRCSDVVTDLTGLLGYVPYH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1107		20	80		0.995493
2236	33		41		1.0
2844			25	75	0.996473
2963	16			83	0.994512
2965	83		16		0.994512
2992	87			12	0.992554
2994	87		12		0.992554
3065	87			12	0.992554
3066	87		12		0.992554
3388	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain