SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2975

Length: 1430 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2975 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	41%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5B5I5

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 144 - 224

Fln protein: MNSSEEAQLESCEEFPFDGDNDSEEKELGGFDDIVDLCAVLRLDGEYLLAPRKSHQCDKRHSSRTVVEDQDPTFYSKIAQVKGPKSGIEVEALDAWIHYFADQKKEPSRLVHLLLAMAAVQSKSGEIEFPETAQEFLLGWPPS*

Protein Length: 145

Fln nts: ATGGGGAGACAGTGAAAGACGTTAAATTGTTCATAAAGCCGAAGGGTACGGAGTCGTGTTCTGGACAATTCCCTCTCACGTATTTAAAAAAAACGGGTTGCTTTCCGAATATTCCGAATAATTTGAATACCAGGGAAAAAAATAAGAATCTCATCATCGCCAATGCAGCCTTATCGATGCGATCGTTTTATGTCTTCTCTGAGACTGGTAGAACGCAGACTTGCATCCGAATCTTCATCCAAGGGAACCCCAACGAAGAGAAAATTCCACAGTGAGAACACCAACAATGGGGTTCTTGGAAAAATCCCTGATAAAGAAGAAGGGTTTGCAAACTCGAAAGAAAAACTCTCATCCAATACATCAAACGTGGAAAATATCAGCGAAGAAATTCAGTCTGATATACCATCCCAGTGTACAGAATTCTGTTTCAGTCCTCCAATTATTGCCTGCAGGGCTGAGCCTTACCTGAGAGAAACACCGGCTTCCACAAACAGTGATACAGCTGCAGAGTTTTTTCTTATGACGACATATGG_-_ATGAATTCGTCCGAGGAAGCGCAATTGGAATCTTGCGAAGAATTCCCGTTTGATGGCGACAATGATAGCGAGGAGAAGGAGCTCGGGGGTTTTGATGATATAGTTGATCTGTGTGCTGTCTTGAGGCTTGACGGAGAGTATTTACTGGCACCGCGAAAGTCTCATCAGTGCGATAAGAGGCACTCCAGCAGGACTGTTGTAGAGGATCAAGATCCTACATTTTATTCAAAAATTGCACAGGTAAAGGGGCCGAAGTCTGGGATTGAGGTTGAAGCTCTGGATGCTTGGATTCATTATTTTGCAGATCAGAAAAAGGAGCCATCTAGGCTAGTCCATCTTCTGCTAGCCATGGCTGCTGTACAGAGCAAGTCGGGCGAGATAGAGTTCCCAGAGACTGCACAAGAATTTCTTCTTGGTTGGCCACCATCTTGAGGTTTCCTCAAACTTTAATACTTAAAGGGCCACTTGACACTACTTGATAAACTAAATAGTGGTTGTATTGGTGACCGCATACACATGCATGAGGCAAGGCACATGATTGAAGGGAGAATCTCTTTCAGTTCCTTGATTTTGGATTGAACAATATACTATTTTTTGTAATACAAAATCATGTCAGAATTGGTACCGAAGGTAAAAATGGATCTTTAGCTTTTCCTAAAGATGAGTTAAAGCTTCTTCTTGCAGGTGCATAACTTTCTAGCCTTTTTTAACTGCTTTTAAGCACATAAGACACTACTATAAAGTGTTGTAACATTTCCACCATTCTAATGAACATTTTGTTAGAATGGTGACAGTCAATACGGGGTTGTGTAGAGTCATGAATACTGATGTTACTTTAAATGTTAAATATGTAATCGATGTAACATTTAAATGTTAAATATGTAATTGATGTAACAT

Fln Alignment:

Contig2975___FYSKIAQVKGPKSGIEVEALDAWIHYF----ADQKKEPSRLVHLLLAMAAVQSKSG--------EIEFPETAQEFLLGWPPS
A5B5I5______________FYSRIVGVKGPKCGKEVERLEGWVKHFYNGGEEERREPLRLAHMLLGKAVFDSENSGGGGGGFRGLEFPSTIEEFLHNDPPT

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
637	11	88			0.923564
668		14		85	0.993533
750		66		33	0.997452
755	25		75		0.996473
757	75			25	0.996473
773			50	50	1.0
807	33		66		1.0
985			75	25	1.0
986		75	25		1.0
1011	75			25	1.0
1033		25		75	1.0
1086	71	28			1.0
1117		12		87	0.992554
1118	12			87	0.992554
1120	12			87	0.992554
1125		71		28	1.0
1126	85			14	0.993533
1150	25		75		1.0
1155			37	62	1.0
1163	37	62			1.0
1164			37	62	1.0
1202		12	87		0.992554
1207		14	85		0.993533
1208		14	71	14	0.984337
1234		66	33		1.0
1255	33		66		1.0
1290		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain