SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2971

Length: 899 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD40 repeat-containing protein [Dictyostelium discoideum AX4] sp\|Q55FJ2.1\|WDR91_DICDI RecName: Full=WD repeat-containing protein 91 homolog gb\|EAL73495.1\| WD40 repeat-containing protein [Dictyostelium discoideum AX4]	-	-	1.0e-37	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00037813001; OsI_19355; OsJ_17950; POPTRDRAFT_680586; RCOM_1581460; VITISV_038886;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002337176.1	predicted protein, partial [Populus trichocarpa]	0.0	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: E0CUP1

Fln msg: Distance to subject end: 390 aas, your sequence is shorter than subject: 273 - 663

Fln protein: MENMQYAEELMREFLIFRGFTNTLRAFEAEISTDIGKGFQVDKILDLIFSVYVPKFEAEKLVGLMGFLKQCFFSPADMRFNSTLAKLELSTIRYYIVYALQKGRQDKVVEFFARYGNDLLHNADDWSPWFAIPYMRNPSMDPQFRVFFSKEWLDTLLVSFRNFLSEIFSGIRLPALLRVSSEQINIRSLKKEIEHLNSECSQLRTSLQAKEAELLQLKSFVPPATTANRLDEMRIVQESSRKTILEGRLAQDTSMSKEESESAAAALTYGLDE

Protein Length: 274

Fln nts: ATCCTTCGATCGGCCATGGATTGACAATAAACAGCAGGAAAACAAAGTACGGTTCTGTCCTCTCCTCAGCAGGCACAGCC_-_ATGGAAAACATGCAATACGCAGAGGAGCTGATGAGAGAATTCTTAATATTCAGAGGTTTCACAAATACACTGAGAGCCTTTGAGGCCGAGATCTCCACTGACATAGGAAAGGGATTCCAGGTGGACAAAATTCTGGATCTCATATTCTCAGTCTACGTCCCCAAGTTCGAGGCAGAGAAACTCGTGGGTCTCATGGGCTTCCTGAAACAGTGCTTCTTCTCGCCCGCGGATATGCGGTTCAATTCAACTTTGGCCAAACTCGAACTCTCGACTATTCGCTACTACATCGTCTATGCGTTGCAGAAGGGCAGGCAGGACAAAGTAGTTGAGTTCTTTGCCCGGTATGGCAATGATTTGCTGCATAATGCGGATGATTGGAGCCCCTGGTTTGCTATTCCCTACATGAGAAACCCCAGCATGGATCCTCAATTTAGAGTTTTCTTCTCAAAAGAGTGGTTGGATACCTTACTCGTCTCATTTCGGAATTTTCTCAGCGAGATTTTCAGTGGGATTCGCCTTCCTGCTCTCTTAAGAGTGAGTTCTGAGCAGATCAACATAAGATCCCTGAAGAAAGAGATAGAGCATCTGAATTCTGAATGTTCTCAACTACGAACATCTTTGCAGGCTAAGGAGGCAGAACTTCTTCAGTTAAAAAGTTTTGTTCCACCAGCAACAACGGCTAATAGGCTGGATGAAATGAGAATTGTTCAAGAATCTTCCAGAAAAACAATCTTGGAAGGTAGACTTGCTCAAGATACTTCCATGTCGAAGGAAGAATCTGAGTCAGCTGCTGCAGCTTTGACTTATGGTTTAGATGAG

Fln Alignment:

Contig2971___MENMQYAEELMREFLIFRGFTNTLRAFEAEISTDIGKGFQVDKILDLIFSVYVPKFEAEKLVGLMGFLKQCFFSPADMRFNSTLAKLELSTIRYYIVYALQKGRQDKVVEFFARYGNDLLHNADDWSPWFAIPYMRNPSMDPQFRVFFSKEWLDTLLVSFRNFLSEIFSGIRLPALLRVSSEQINIRSLKKEIEHLNSECSQLRTSLQAKEAELLQLKSFVP
E0CUP1______________MEKMQYAEELVREFLVFRGFTNTLQAFEGELCTDIGKGFQVDKILDLIFSVYIPKFQAEKLVCLLSFFKQCFSSSSETVLIATLSKLEVSILRYYIVHAIQSGRTERVIEFFGMNGNDLLQRGQDWTPWFAVPYLKNPSLDPQFRIYFSREWLEALRLSVRNFLKVSLTYPRIPALLKICSEKNTVNRLKKDIKQLNLKLSQLQALLEEKEAQLFQSRSYAP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
461		66		33	0.997452
465		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain