SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2922

Length: 993 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2922 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding motif protein 19 [Gallus gallus] ref\|XP_001233414.1\| PREDICTED: RNA binding motif protein 19 [Gallus gallus]	-	-	1.0e-30	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Gene names
Sma3	GSVIVT00030096001; OSJNBa0070C17.5; OSJNBa0085I10.19; OsI_17353; OsJ_16124; PHYPADRAFT_207810; POPTRDRAFT_413036;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19610.1	" nucleotide binding;nucleic acid binding;RNA binding chr4:10677482-10681623 FORWARD LENGTH=816"	0.0	49%
RefSeq	Arabidopsis thaliana	NP_193696.3	nucleotide/nucleic acid binding protein [Arabidopsis thaliana]	0.0	49%
RefSeq	Populus trichocarpa	XP_002303703.1	predicted protein, partial [Populus trichocarpa]	6.0e-37	46%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
645	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain