SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2903

Length: 1761 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2903

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pescadillo-like protein [Zinnia violacea]	-	-	0.0	47%
FL-Next	sp=Pescadillo homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	41%
Sma3	Pescadillo-like protein	-	-	4.689e-14	-

Source	Gene names
Sma3	At5g14520; CHLREDRAFT_206018; GSVIVT00020673001; LOC_Os03g49210; MICPUCDRAFT_44858; MICPUN_66594; OSJNBb0017F17.15; Os03g0699200; OsI_13152; OsJ_12225; PHYPADRAFT_31350; POPTRDRAFT_577701; POPTRDRAFT_579669; POPTRDRAFT_712790; RCOM_1064130; T15N1_10; VITI

Source	GOs	Term	Type	e value	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	0.0	-
Sma3	cell proliferation	GO:0008283	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BRCT domain	IPR001357	-	0.0	-
Sma3	Pescadillo	IPR010613	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14520.1	pescadillo-related chr5:4680789-4684330 REVERSE LENGTH=590	48%
RefSeq	Arabidopsis thaliana	NP_196956.1	pescadillo-related protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002305360.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: A8JBB2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 87 aas, putative chimeric sequence, your sequence is shorter than subject: 429 - 678

Fln protein: ITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVNFKLYYAISLKYPPILDPRLEAAAAELYAIVKDLASNTVNPLQDDAAERGEEIVPSESELNNPEQKEKILAESQARLALLQHRLSSMDKERAMTNDLHQEDTAIQNKEKYDDGEDEDEDEEKKVCRTFFKDLKFFLGREVPRESLLFVIQAFGGVVSWDGDGAPFKETDEDITHQIVDRPTQGHKFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPPPHLSPFVDEEAEGYMPEYAKTIKRLQAAAKKQLLPLAGIEDQDINDSQNILPDAIAYRNEANAATEKGAEEMAIERSYQEELAKELEGIPYSASLSSKVLQESLEASQDEEKSPSTGFGPDNDADDSKLSQVMMSRKSRKLYEAMQIGKSKKRANVELLEERKRKTNKAGKRE*

Protein Length: 430

Fln nts: ACATTACGTGGCTCACACCACATGTTCTGCAACAAGTTCTCCCCGGGGATGTTGATTTTCGTGTTATGCTGACATTTGTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATGCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCGGCAGCAGAACTGTATGCCATTGTCAAAGACCTTGCTTCAAATACTGTGAACCCGCTTCAGGACGATGCTGCTGAACGAGGGGAGGAGATTGTTCCTAGTGAATCTGAGCTAAATAATCCAGAACAGAAAGAGAAAATATTGGCAGAGTCACAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCATCGATGGACAAAGAAAGAGCTATGACTAATGATCTTCACCAAGAAGACACAGCAATTCAAAATAAAGAGAAATATGATGATGGGGAAGATGAAGATGAAGATGAAGAGAAGAAAGTCTGCAGGACGTTCTTCAAGGATTTGAAATTCTTCTTGGGCCGGGAGGTTCCAAGAGAGTCATTACTTTTTGTTATTCAAGCTTTTGGTGGAGTTGTTTCATGGGACGGCGATGGGGCCCCTTTCAAAGAGACAGATGAAGACATTACCCACCAGATAGTGGATCGACCAACCCAGGGCCATAAATTTTTATCTAGGGACTATGTTCAACCTCAATGGGTTTATGACTGTGTGAACTCTCGCCTTATCTTGCCTACTGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGTTGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGATTGCAAGCAGCAGCAAAGAAACAACTCTTACCTTTGGCAGGGATCGAGGATCAAGATATCAATGATTCCCAAAACATACTGCCAGATGCTATTGCCTATCGAAATGAAGCCAATGCAGCAACAGAAAAGGGTGCAGAGGAAATGGCCATTGAAAGGTCATATCAAGAAGAGCTGGCAAAGGAACTTGAAGGCATTCCATATTCTGCATCCTTGTCAAGCAAGGTATTACAGGAATCGCTGGAAGCTTCTCAAGATGAAGAGAAGTCTCCAAGCACAGGTTTTGGACCGGACAATGATGCAGATGACTCAAAGTTGTCACAGGTTATGATGTCCCGGAAAAGCAGAAAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAAACAAACAAGGCAGGCAAGAGAGAGTGA___GAAACTGCTTCCAGGGTGTTATGGCTCTGCGAAAATGGTCCAAATGTTGGACAGATTTGAGTGGCATTCTATTCTGTATATCATATTCTTATATTACAGCCAGTATTTTAAGAGAGTTATCGATCGAATTCCATGCCATATTTAGAAAGTACGCATGGTCGAATGAGAAGTGTGTTGAAAAGTTTAGACTTTAACGGTCATGAGTTTGGAACTGTTATAGTATGCTTTGGCCAAATATCCCTTTAGGTGATCAAGCGCTTGGTTCATTGTGATGCCCATGTGAATCCTACGAGGACACGCATGCTATGTTAATTTAAATGGTGCATTTTTAAAGCTTGGGCCGGCCTTATGTAATTTTCTCATCTATATTATTTTTGATTTACCAGGGGTCTGTCTGAAAAGTATATATTTATGCAATTAACTTCTAGATCTAATGATTTTGCATGCTATGCTAATTTAAATGGCGCTTCGC

Fln Alignment:

Contig2903___ITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVNFKLYYAIS--------------LKYPPILDPRLEAAAAELYAIVKDLASNTVNPLQDDAAERGEEIVPSESELNNPEQKEKILAESQARLALLQHRLSSMDKERAMTNDLHQEDTAIQNXXXXXXXXXXXXXXXXXVCRTFFKDLKFFLGREVPRESLLFVIQAFGGVVSWDGDGAPFKETDEDITHQIVDRPTQGHKFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPPPHLSPFVDE-EAEGYMPEYAKTIKRXXXXXXXXXXXXXGIEDQDINDSQNILPDAIAYRNEANAATEKGA---EEMAIERSYQEELAKELEGIPYSASLSSKVLQESLEASQDEEKSPSTGFGPDNDADDSKLSQVMMSRKSRKLYEAMQIGKSKKRANVELLEERKRKTNKAG
A8JBB2______________VTWLVPHALSQVLPPDVDYKVMLTFLEFYNTLLQFVNFKLYHNLGAALPSLRVYPLFSQLRYPPVLDPRLEEAAAELAAIMKDIAGMEEEEPEEVDSEAGDEDDDDLPVLDSGTRRRRAAAAGPAPR---RWRCWVRTTRTRMTTCRWVSDRA-----GGACGPGVDPSDEAAVCGSLFRGRVFFLGREVPREPLMLVIRAFGGVAAWDGDGSPHAETDEAVTHQIVDRPKQGHKFLSREYVQPQWVFDSANFRVLMPTDLYAPGTVPPPHLSPFVGEADEDGYTPDFAKTVRRLQDAANAARLRAAGLALKGADGSEFVGEGA----DGAAAADGEGAAGEDLAAAERQYASELAKE-----------------------DEE---------------AAMADIMMTRKARKMYNNMKQKEAAKQERVQQLESKKAKLAATG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
884		83		16	0.994512
1419		16		83	0.994512
1587	25	75			0.996473
1678			87	12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
450	472	GAAGAT GAAGAT GAAGAT GAAGA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain