SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2690

Length: 2090 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2690
ATTGCAGGCCCAAATATCTAGCAATCATGTAATTGAGGCAGAGATAGAAAACAATCTTAGTACCCTGAAGGCAACAATGGAAATTCAATGCTCTAAAATGAAGGAGGAATTAAAGGAAGAAAGAGCTACAATAACAGATAATATGCCAAGGATAACAAAGCTTCAGACAGCCAATGATAGTCTGGCTGAAAGGTTGAGAGAATATAAACTAAACTTAGAACGATTGGAGGAAAAGTTGTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGTTAACCAAGTCTATGAAAACAAACTGATTGAAGACCTGCAACTTATTTCAGATTTACGGTCAAAATTAGAAAAGAAGGATATGGAATTAGCTGTTTATTTCAAAACTGCTCTTGCATTAGGGACAGCCCAGAACGCCGAGAGGCCAGAAGTGTTGAGATTACAAGAAAGGCCCGAAGGCTTTGAATCTCAGATTGGCTGCCTTCAAAGGGTAGATTCTGTGTTTGACTATATTAACTCCAAATTCTTGGATATGACCCTAAAATTAGACGGCTTGGAAGAAACTTCAAAGATGTTCCTTCAACATATTCAGAGTCAGGTTGACTTATATCAGGAGGAACATCTAGATCAACAATGGAAGTATGATTTTGAAGAGCAGATAAGGGAATTTGTGCTAGGAGGTTTCTTAAAGGACCTTGAAGGGTGTCTTAAGATAAAGGAACAGGAGGAAAGAAAACCGTCTATGCTGCGAGTGAGATGGGATGATGGGAGGGTGGCACTGATGAATGAGTTAAATCATCTGCGTCAAGAGTTAGAGCTCTTGAAAATCGAGGAGCCAGTGAAATCTTCTGTCAATTCTGATGGTGGCAACTCAAATGGATTCGCATATTTCTCTCATCTTACACATGAAGTGAAGAATGGGGAATCGCCGGATAGTCAAAGAAGGGACTGGTCCTTGAGAAAGTTTTATTCAGGTCAGCTTTCTACTGATACATCAAAAGTGGAGGATAATAACTATAATACTGCTCCGACAGGAAAAGATGCAGGTCATTCTTCAAAGGAGCCAGATCTATCTGGGCACACTCAGACTGAGATTGCAGATATTCTAGAATCTCCTTTAAAAAGCATGTCTAAGGAGCAGCTCACAGCACATTATAAACGAGCAATGGCTGAACTAAAAGGGAGCATGAGTGCATTGTGGAAGATAAAACTGAGGAGATTTACAAGCTTAAGAGGGAACTCCTCAGAGAGAAAGATAGTTTGCACTCTAAAAAAGACAAGGAGTTAAATGTTTTGAAGAAAAGGATTGCTGAGATTACTGGAAGGTTGGTCAAACTTGTTGAGGAGAACGACAAGTTATCTTTAGCTGTTGTTGAGGATCACGACTACAAAATGGTTTGCAGATTGAAGGATGAAATGCAAGTTGAAAAGATAAGTTTACTGGAGAAAGTTACAGAAAAGGAAGTTGAATTGAAAGCATTGTCTGAGAAACTCTCAGATGCCTTGAAAAAAGACACAGAGCGTTTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGACATAGTGACATTGACTACAATAGACATAATAAGCACTCTGTTTGAAGAGACAGTCAAAGAGAGAGATGGTTCTTTGAGTTTGGCATTGCAGGAACGGGATCACATCATGCAAGAAAAGGTTTCACTTGAAGAGATGTTGCATGAAAAAGACAGCTCTATGAACTCAGTGTGTAAAGAAAACGAAGAGCATAAGCTAAAATTAGCTCTGCTGGAGAAACTGATCAAGGAGAAGGAAAATTCTTCAACCGTGTCATATAGCCAGTCGGAGCAAAGAGATCAGATTGAAGAACAGAAAAAGATGTTAGATCAGGCATTGGAAGAATGCAAAGAACTCAAGAAACAGAAACTGTGTCTTGAAACTTCTCTATTGAATAAGAATGGTGTTGTAGATTCAGTGAAAAGAGAGCAGGAAGAACTGAAGGAGCAAATATTATCCATAAAGAAAACAGTAGAAGAAAATGAAGCTGCACTGAATATAGCATCGAGGGATCTTGAAAAGGAAAGGAAAGAAAAAGAAGTACTCGA

Ace file of the UniGene sp_v3.0_unigene2690 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SMC_N multi-domain protein	-	-	6.0e-14	20%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	28%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9N5P5

Fln msg: Distance to subject end: 222 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 306 - 660

Fln protein: TKREHECIVEDKTEEIYKLKRELLREKDSLHSKKDKELNVLKKRIAEITGRLVKLVEENDKLSLAVVEDHDYKMVCRLKDEMQVEKISLLEKVTEKEVELKALSEKLSDALKKDTERLNHIAELESEKAEMDIVTLTTIDIISTLFEETVKERDGSLSLALQERDHIMQEKVSLEEMLHEKDSSMNSVCKENEEHKLKLALLEKLIKEKENSSTVSYSQSEQRDQIEEQKKMLDQALEECKELKKQKLCLETSLLNKNGVVDSVKREQEELKEQILSIKKTVEENEAALNIASRDLEKERKEKEVL

Protein Length: 307

Fln nts: ATTGCAGGCCCAAATATCTAGCAATCATGTAATTGAGGCAGAGATAGAAAACAATCTTAGTACCCTGAAGGCAACAATGGAAATTCAATGCTCTAAAATGAAGGAGGAATTAAAGGAAGAAAGAGCTACAATAACAGATAATATGCCAAGGATAACAAAGCTTCAGACAGCCAATGATAGTCTGGCTGAAAGGTTGAGAGAATATAAACTAAACTTAGAACGATTGGAGGAAAAGTTGTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGTTAACCAAGTCTATGAAAACAAACTGATTGAAGACCTGCAACTTATTTCAGATTTACGGTCAAAATTAGAAAAGAAGGATATGGAATTAGCTGTTTATTTCAAAACTGCTCTTGCATTAGGGACAGCCCAGAACGCCGAGAGGCCAGAAGTGTTGAGATTACAAGAAAGGCCCGAAGGCTTTGAATCTCAGATTGGCTGCCTTCAAAGGGTAGATTCTGTGTTTGACTATATTAACTCCAAATTCTTGGATATGACCCTAAAATTAGACGGCTTGGAAGAAACTTCAAAGATGTTCCTTCAACATATTCAGAGTCAGGTTGACTTATATCAGGAGGAACATCTAGATCAACAATGGAAGTATGATTTTGAAGAGCAGATAAGGGAATTTGTGCTAGGAGGTTTCTTAAAGGACCTTGAAGGGTGTCTTAAGATAAAGGAACAGGAGGAAAGAAAACCGTCTATGCTGCGAGTGAGATGGGATGATGGGAGGGTGGCACTGATGAATGAGTTAAATCATCTGCGTCAAGAGTTAGAGCTCTTGAAAATCGAGGAGCCAGTGAAATCTTCTGTCAATTCTGATGGTGGCAACTCAAATGGATTCGCATATTTCTCTCATCTTACACATGAAGTGAAGAATGGGGAATCGCCGGATAGTCAAAGAAGGGACTGGTCCTTGAGAAAGTTTTATTCAGGTCAGCTTTCTACTGATACATCAAAAGTGGAGGATAATAACTATAATACTGCTCCGACAGGAAAAGATGCAGGTCATTCTTCAAAGGAGCCAGATCTATCTGGGCACACTCAGACTGAGATTGCAGATATTCTAGAATCTCCTTTAAAAAGCATGTCTAAGGAGCAGCTCACAGCACATTATAAACGAGCAATGGCTGAACTAAAAGGGAGCATGAGTGCATTGTGGAAGATAAAACTGAGGAGATTTACAAGCTTAAGAGGGAACTCCTCAGAGAGAAAGATAGTTTGCACTCTAAAAAAGACAAGGAGTTAAATGTTTTGAAGAAAAGGATTGCTGAGATTACTGGAAGGTTGGTCAAACTTGTTGAGGAGAACGACAAGTTATCTTTAGCTGTTGTTGAGGATCACGACTACAAAATGGTTTGCAGATTGAAGGATGAAATGCAAGTTGAAAAGATAAGTTTACTGGAGAAAGTTACAGAAAAGGAAGTTGAATTGAAAGCATTGTCTGAGAAACTCTCAGATGCCTTGAAAAAAGACACAGAGCGTTTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGACATAGTGACATTGACTACAATAGACATAATAAGCACTCTGTTTGAAGAGACAGTCAAAGAGAGAGATGGTTCTTTGAGTTTGGCATTGCAGGAACGGGATCACATCATGCAAGAAAAGGTTTCACTTGAAGAGATGTTGCATGAAAAAGACAGCTCTATGAACTCAGTGTGTAAAGAAAACGAAGAGCATAAGCTAAAATTAGCTCTGCTGGAGAAACTGATCAAGGAGAAGGAAAATTCTTCAACCGTGTCATATAGCCAGTCGGAGCAAAGAGATCAGATTGAAGAACAGAAAAAGATGTTAGATCAGGCATTGGAAGAATGCAAAGAACTCAAGAAACAGAAACTGTGTCTTGAAACTTCTCTATTGAATAAGAATGGTGTTGTAGATTCAGTGAAAAGAGAGCAGGAAGAACTGAAGGAGCAAATATTATCCATAAAGAAAACAGTAGAAGAAAATGAAGCTGCACTGAATATAGCATCGAGGGATCTTGAAAAGGAAAGGAAAGAAAAAGAAGTACTCGA

Fln Alignment:

Contig2690___KREHECIVEDKTEEIYKLKRELLREK-DSLHSKKDKELNVLKKRIAEITGRLVKLVEENDKLSLAVVEDHDYKMVCRLKDEMQVEKISXXXXXXXXXXXXXXLSEKLSDALKKDTERLNHIAELESEKAEMDIVTLTTIDIISTLFEETVKE
B9N5P5______________KRHHESKVQEMTEEIFSLKREYLKERGSSLPVRKDKDLDILRKKIAEVILKLDDILVENEKVPSA---SNNAESLDNMKDRLESLRLE-------NHELRDLLAQKIRE-IKLLSSQVSDATEKMSQHSLTEVNLLRIITNLKSLIEDTHAE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
100			14	85	0.993533
402			75	25	0.996473
424	25		75		0.996473
459		80		20	0.995493
1132	80			20	0.995493
1133	80		20		0.995493
1135		80	20		0.995493
1137			20	80	0.995493
1138	20			80	0.995493
1142		20		80	0.995493
1148	80			20	0.995493
1150	20	80			0.995493
1151	80	20			0.995493
1153	20			80	0.995493
1155		80	20		0.995493
1221		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain