SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2638

Length: 2974 nt

UniGene Fasta

>sp_v3.0_unigene2638
CAAGTACCTCGTCCTACTCCACTGTATCTGTTGGGGGTTGGTCCTAAAGAGTTGTCTACAATTGTAGAAGAACCCAGTCAGGGTAGCAAACCCTTACAATCAAACTGTGTGCAGAAGCTTGCAGATATAAAAAGAGCACAAGACCTGACATTGCGAGCCCCCTCAAATACCATGGTGGGATCTTGTTTGCCTACTGAATCAGCTGGAGGAGATGATTATCAACATCCAGAGAGTTACTTGGAAGGTGAAGGCAGTCCTTCTCCGGCAAGGGTGAATAGAGGTTTCACAGTGAAGGGTCAAAGAAAAGATGATAACACAGTATACTTAAGACTTAGGATTGCAGATTCAGAAGGTCATGTTCGCAATATTCACTTCCCCTTTGACATTGATGCTGACACTGCAATGAGTGTTGCAAGTGAAATGGTGACGGAATTGGATCTATCAGATCAAGATGTGACAAATATTGCAGCCATGATTGATACAGAAATACAAGCTCTTGTGCCAGAATGGCAACCTGCACTACCTTTTGTGGATACTGCTGAGGAGGAGATGGATATTGATTATCCTAGGTCTGCAATTGAAGATGATGTTCCAGAGATGCTCAGTGATAACGATAGGCCCCCTGGTGCATTTGTACTTGAACGCCGTGACCTTCACTGTCACTCAAGTATTGGTCTGATTCCCCAAGATCCTTAACTCCAGATTCTTACATGAAGACTGCATTAATGAATGCTTCTTCTAAAGCAGAAGGGCCAATGCATGGCAGATTTGATGAAGTGAACCATGTCCAGTCTGCCTCAGACAGTGTTAAGCATCACCATAGTGAATTTGATGATCACAAGGACAAAGGAGATGGTTTAGACATAAGTTCAAAGTTTCCCAAATCTTTTGGGAGAGGCAACTTGCAAGCAAATGCTGTGGCGATTGATAAAGATAAAAACCACTCTCTTTCTGAGGTCATAAAGAATACTGTGGTGGCTGAGGGGAAGATGTCGGCTGAAGATATGAATACTGATGGCAGTACTCAAGAGTGGTTTAAAAGAATGAACCAAGCGAATCTACAAATGGAGGATTGCAACAATGCTAAAGCTTTGGACCAGAATGTAGTTGCAGGCAAGCAAGATGGTAAAACTGTTTCTTCAGGGTCTGGTGTGACTTTGCCAGATTGTACCACCTTGTTGGCCAATGAGTTGGAAGATGAGAATAGTGTAACCCAAAAAATCAAACTCTTATTACTTAAGCAACAAGAAGAAATAGAGGAGTTGAGACAAAAGCATGAGCGGGTACTGCAGGAATTTATAAATCAACTGCCACAGAAGGGTTTTACTGTGAAATTTTTAAGGAACTGTTTGCCTTCATCGTCCAATGATCCCTGCTACAAGGTCTCTGTCAATACTAGTGCAAGCAAAATTAAACCATTTCATGGCGCAGACTTTGTGAGCAGCAAAGAGGAGATTGATGAAACATCAAACCAAAAAGCCTTAGCTGAAGAATTTGGCAATCTTAATTCAGTTGCCAGGAAGGAAGCAGTGCAGGAAGCTCCATACAAAGATATTGGTATTGAGACTGCATGTAAAGAGTCAACCTCTGGCTTAGCTATCAGAGATGAGCAGAATATCAAGAATGCTGCACAACCTCTTGATAAAATAGTTGTCGCAAAGGAGACAGAGAATCCTAGTTCCTTGAAAAGTACTGGGCCTTTGGAGCTTTCATGTTTTGTAGACATGGCATCAAAGATGGAAACAGGTTGTAATCTCTCTGATACATCTACAGTGGACAAATGCTTCAGGCAGGATGTAACAGATGCACAATTTAAAATATCAAATAATGTTAAAAAAATCCCCATTTCAAATTGTAGTAGTGTTTCTAATAGTATTGACAAGCTTGGCAAGCGTGGTTCACTCATTGAATTATACAAGGGTACATCATCCCTCAGGGATAAATCCACCTCATGCAAGAGGGAAGTGAAATCTTTGGACATGAACGTTAAAGGGGATCTATCAAGCAGCCCAGACAAGATGAAAAACAATGATAAAGTGCTTCATCAGCTGAAGAAGGAACAGCTTCAGAAATCTATTGCAGACCTCGAGGCTAAAACTCTAGAAGGCTTGAAGCAATCTAAAAGTGGTTATTTCATTAGTAATTCAGGAAAGAAGCTCAGTCCTGGTGTCTCTCAAGCTGGTCCTGGTGGATCCAATGTTTCTGGCACGAGGCAGCATGCTTCATCTGAGATAACTAGAGTATGATTTTGTTACTTCTTTGATTGGAGTCACCTATGGGTTGATAGAAATGCAGCTGGCCATCAGGATTGAACAAAATGGATGTGCATATACTCAGAGGTTAGGATTTTTTGTTAGCAAGCCAAGGTTTTCAAGGTTTGTATTCCATCATAGAATTTGGATGTACGTCAGCTCATAGTTAAGCAAAGGTTTTCTGGCTTTCTAGTGGTCATGGCTGGAAAATCTTCACTCTATTTTGTTTGAGAAAGGATGATGCAGAGGAGAAAAGAGAACAATTTTGACACATGTTTGAATGATGAGATACTGGTAGAAGGCTCCAGCATGGCAGTTTTCCCAGCCAGCGTTTATGGGGGTATTCACAGTACAATTTTATGGGTGATGATTCAGTGAAATAAAAAATCTATCTGAAGTATCTGCCTGGCTAATCAGCAATCATACTGTGTCCTTGACAAGATCACTTCGTTGGTAAACTATGATCATTTTCAAGTTATTTGACTTGAGGCACATACTGCATTCTATCATTTTGTAATATATATTCTGCTCTCAGACAAGAGCATGTATAACTGTCAACTATCCATTTACCGCCTTTTCCTTTGGGTTGTATGGAATATCTTAAGTCATGAAATGATTTAAGGTGAGTATTATAGTCACCTGTTATCACTCAAGGAAACAATTTCTTAAAAGTTAAACATTACTTTTATTATTAATGAAAAGATATGGTCGTCTTTTTTTGG

Ace file of the UniGene sp_v3.0_unigene2638

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9RAT5_RICCO	-	-	9.0e-32	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	With no lysine kinase	-	-	4.864e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	4.891e-12	-

Source	Gene names
Sma3	At3g04910; At3g22420; At3g48260; At5g28080; GSVIVT00019984001; GSVIVT00031123001; GSVIVT00034861001; LOC_Os02g45130; MCB17.15; MEK1; OJ1197_E09.9; Os02g0672800; OsI_025649; OsI_08436; OsJ_007637; PHYPADRAFT_1987; POPTRDRAFT_1066545; POPTRDRAFT_1085371; PO

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04910.1	WNK1, ZIK4, ATWNK1 with no lysine (K) kinase 1 chr3:1355084-1358057 FORWARD LENGTH=700	5.0e-25	62%
RefSeq	Arabidopsis thaliana	NP_001118576.1	serine/threonine-protein kinase WNK1 [Arabidopsis thaliana]	4.0e-25	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSG2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 378 aas, putative chimeric sequence, your sequence is shorter than subject: 232 - 885

Fln protein: QVPRPTPLYLLGVGPKELSTIVEEPSQGSKPLQSNCVQKLADIKRAQDLTLRAPSNTMVGSCLPTESAGGDDYQHPESYLEGEGSPSPARVNRGFTVKGQRKDDNTVYLRLRIADSEGHVRNIHFPFDIDADTAMSVASEMVTELDLSDQDVTNIAAMIDTEIQALVPEWQPALPFVDTAEEEMDIDYPRSAIEDDVPEMLSDNDRPPGAFVLERRDLHCHSSIGLIPQDP*

Protein Length: 233

Fln nts: CAAGTACCTCGTCCTACTCCACTGTATCTGTTGGGGGTTGGTCCTAAAGAGTTGTCTACAATTGTAGAAGAACCCAGTCAGGGTAGCAAACCCTTACAATCAAACTGTGTGCAGAAGCTTGCAGATATAAAAAGAGCACAAGACCTGACATTGCGAGCCCCCTCAAATACCATGGTGGGATCTTGTTTGCCTACTGAATCAGCTGGAGGAGATGATTATCAACATCCAGAGAGTTACTTGGAAGGTGAAGGCAGTCCTTCTCCGGCAAGGGTGAATAGAGGTTTCACAGTGAAGGGTCAAAGAAAAGATGATAACACAGTATACTTAAGACTTAGGATTGCAGATTCAGAAGGTCATGTTCGCAATATTCACTTCCCCTTTGACATTGATGCTGACACTGCAATGAGTGTTGCAAGTGAAATGGTGACGGAATTGGATCTATCAGATCAAGATGTGACAAATATTGCAGCCATGATTGATACAGAAATACAAGCTCTTGTGCCAGAATGGCAACCTGCACTACCTTTTGTGGATACTGCTGAGGAGGAGATGGATATTGATTATCCTAGGTCTGCAATTGAAGATGATGTTCCAGAGATGCTCAGTGATAACGATAGGCCCCCTGGTGCATTTGTACTTGAACGCCGTGACCTTCACTGTCACTCAAGTATTGGTCTGATTCCCCAAGATCCTTAA___CTCCAGATTCTTACATGAAGACTGCATTAATGAATGCTTCTTCTAAAGCAGAAGGGCCAATGCATGGCAGATTTGATGAAGTGAACCATGTCCAGTCTGCCTCAGACAGTGTTAAGCATCACCATAGTGAATTTGATGATCACAAGGACAAAGGAGATGGTTTAGACATAAGTTCAAAGTTTCCCAAATCTTTTGGGAGAGGCAACTTGCAAGCAAATGCTGTGGCGATTGATAAAGATAAAAACCACTCTCTTTCTGAGGTCATAAAGAATACTGTGGTGGCTGAGGGGAAGATGTCGGCTGAAGATATGAATACTGATGGCAGTACTCAAGAGTGGTTTAAAAGAATGAACCAAGCGAATCTACAAATGGAGGATTGCAACAATGCTAAAGCTTTGGACCAGAATGTAGTTGCAGGCAAGCAAGATGGTAAAACTGTTTCTTCAGGGTCTGGTGTGACTTTGCCAGATTGTACCACCTTGTTGGCCAATGAGTTGGAAGATGAGAATAGTGTAACCCAAAAAATCAAACTCTTATTACTTAAGCAACAAGAAGAAATAGAGGAGTTGAGACAAAAGCATGAGCGGGTACTGCAGGAATTTATAAATCAACTGCCACAGAAGGGTTTTACTGTGAAATTTTTAAGGAACTGTTTGCCTTCATCGTCCAATGATCCCTGCTACAAGGTCTCTGTCAATACTAGTGCAAGCAAAATTAAACCATTTCATGGCGCAGACTTTGTGAGCAGCAAAGAGGAGATTGATGAAACATCAAACCAAAAAGCCTTAGCTGAAGAATTTGGCAATCTTAATTCAGTTGCCAGGAAGGAAGCAGTGCAGGAAGCTCCATACAAAGATATTGGTATTGAGACTGCATGTAAAGAGTCAACCTCTGGCTTAGCTATCAGAGATGAGCAGAATATCAAGAATGCTGCACAACCTCTTGATAAAATAGTTGTCGCAAAGGAGACAGAGAATCCTAGTTCCTTGAAAAGTACTGGGCCTTTGGAGCTTTCATGTTTTGTAGACATGGCATCAAAGATGGAAACAGGTTGTAATCTCTCTGATACATCTACAGTGGACAAATGCTTCAGGCAGGATGTAACAGATGCACAATTTAAAATATCAAATAATGTTAAAAAAATCCCCATTTCAAATTGTAGTAGTGTTTCTAATAGTATTGACAAGCTTGGCAAGCGTGGTTCACTCATTGAATTATACAAGGGTACATCATCCCTCAGGGATAAATCCACCTCATGCAAGAGGGAAGTGAAATCTTTGGACATGAACGTTAAAGGGGATCTATCAAGCAGCCCAGACAAGATGAAAAACAATGATAAAGTGCTTCATCAGCTGAAGAAGGAACAGCTTCAGAAATCTATTGCAGACCTCGAGGCTAAAACTCTAGAAGGCTTGAAGCAATCTAAAAGTGGTTATTTCATTAGTAATTCAGGAAAGAAGCTCAGTCCTGGTGTCTCTCAAGCTGGTCCTGGTGGATCCAATGTTTCTGGCACGAGGCAGCATGCTTCATCTGAGATAACTAGAGTATGATTTTGTTACTTCTTTGATTGGAGTCACCTATGGGTTGATAGAAATGCAGCTGGCCATCAGGATTGAACAAAATGGATGTGCATATACTCAGAGGTTAGGATTTTTTGTTAGCAAGCCAAGGTTTTCAAGGTTTGTATTCCATCATAGAATTTGGATGTACGTCAGCTCATAGTTAAGCAAAGGTTTTCTGGCTTTCTAGTGGTCATGGCTGGAAAATCTTCACTCTATTTTGTTTGAGAAAGGATGATGCAGAGGAGAAAAGAGAACAATTTTGACACATGTTTGAATGATGAGATACTGGTAGAAGGCTCCAGCATGGCAGTTTTCCCAGCCAGCGTTTATGGGGGTATTCACAGTACAATTTTATGGGTGATGATTCAGTGAAATAAAAAATCTATCTGAAGTATCTGCCTGGCTAATCAGCAATCATACTGTGTCCTTGACAAGATCACTTCGTTGGTAAACTATGATCATTTTCAAGTTATTTGACTTGAGGCACATACTGCATTCTATCATTTTGTAATATATATTCTGCTCTCAGACAAGAGCATGTATAACTGTCAACTATCCATTTACCGCCTTTTCCTTTGGGTTGTATGGAATATCTTAAGTCATGAAATGATTTAAGGTGAGTATTATAGTCACCTGTTATCACTCAAGGAAACAATTTCTTAAAAGTTAAACATTACTTTTATTATTAATGAAAAGATATGGTCGTCTTTTTTTGG

Fln Alignment:

Contig2638___NRGFTVKGQRKDDNTVYLRLRIADSEGHVRNIHFPFDIDADTAMSVASEMVTELDLSDQDVTNIAAMIDTEIQALVPEWQPALPFVD
C0PSG2______________NMDFTVKGKKREDDTIFLRLRIADTEGRIRNIYFPFDVEGDTAMSVASEMVAELDLADQDVTKIAEMIDEEILALVPDWKAGVAIDD

SNPs (tot: 4)

Position	A %	G %	T %	Probability
1929	33		66	0.997452
2151	87	12		0.992554
2398	25		75	0.996473
2403		25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain