SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1904

Length: 2736 nt

UniGene Fasta

>sp_v3.0_unigene1904
GGAAGGAAGAATTGCTGTTTTGATTTCAGCGATTGATTTGCACGCATTGAAACAGAACGCATTGAAACAGAAGAGACAGTGCCACAGGCTGTGCGAGTAGGTAGCCACATTGCAGTTTTGAGATCTTCCACACCAGAAGGAATTAGAAGATATTGAGGTTGAGTGCGCATTTCCGATCTTTTACTTACATCTTCATCTTACGTTTTTGCTACCCGATCCATGGAAAACCATAACCTGCCATCTCCATCCTCGTGCCCCTCCACCTCTGCATCAATCTCATATGCCCACAACAACTCCTATGTATATGATGTGTTTATAAACCACCGTGGGCCTGATTGCAAGAAAACTTTGGCCACCGATCTTTACAAACGCCTTCGCGGATACGGTTTGCGAGTGTTCCTGGACGAGCAGGAACTGCAAGAAGGAGACGCCTTACCTTCTCAAATCAAAGGTGCTATTCAAAAAGCATCCGTTCATTTAGCGATTTTCTCTCAAAATTATGCCCAATCGAGCTGGTGCCTGGACGAGCTCGTACTCATGTTCCGGTCTGGGGCAACCATTCTTCCGGTCTTCTACGGCAGTGTCAAGCCTGCACATCTTCGGTGGGTGGAGGTCAATCCTGAAGGACAGTATGCTCGAGATCTGCTCGAGCTCGAGCAGAAGACAACATTCGACATTGAATCCCGTCAAAACAAGCCACGTTACCCACCTGACACTGTAAAAGAATGGAGGCAGGCTCTTTCTCAGGCTGCAGGCATAATCGGTTTTGAACTAGTGGAGAATTATAATGGTGACCAGCATCAGCCCATCCAACGGATCGTGGAAAGTGTGTTAAAAAACGTTAAACGACCAGTCCATGTGGCGAAATATCCAATTGGTTTGGATCAAAAAATAGAAGATTTTGAAAAGGCAGTGTCATTGCAGCCGCAAAGAAGCGAGACTAGGGTTATAGGAATTGTAGGGCTGGGCGGCGTTGGCAAAACCACCCTCGCAAACGAAATCTTTAACCGTCGGCAATCAAAGTATGATCGAGCTTGCTATTTATCTGATGTCAGTGGGAAACCTGTTGAATTCTCGCAGAGAAAACTTCTTGAGGACTTGGCTCGACATTTTGAGCAAATAGCGGACATTAAAACTGGTATAGATAAGATCGAAACCTATCTCGCATCTCCTCTTGCTCTCCTAATCCTAATTTTAGATAATGTGGATCACATTAACCAGCTGAATGCATTATTTGTACCATTGAAAGATAGGCTTAGTCCAGGTAGCTTAGTTTTAATTACATCTCGCAATAAGGATGTTCTTATAAACTCGGGGATTGAAAAGTCGTTTATTTACGAGTTAAATGGCCTCGATCCACAACACTCCCAAGAGCTCTTCTGCTCTCATGCCTTCGGCCAGCCTAATCCTAGAAAAGGATTTGAAGAAATGGTTAAAAACTTTTTGGATGTCACCCACGGATTGCCGTTATCTCTTCAAGTATTTGGCGCGTCTCTTTGTGGGGAAGATGATAAGAAGGTTTGGATAGCACACTTCAAAAAAATCTCCAAAACACTTCCCGATGATATAACAGGGCGGCTTAAAATTAGTTACGATAGTCTCGATAATGAAGAGAAACAGATGTTCCTAGACATTGCCTGTTTCTTCATGGGAGAAGACAGCGATACTGCCATAAGAATCTGGGGCGGATCTGACTGGAACGGATGGTTGGGTCTTCGTAAACTACAGAACAGGTATCTAATAGAGGTGGACAGCGGAAATCGCATAAGAATGCACGACCACCTGAGAGACCTGGGCAGAGATATTGCAGAGAAAGAATCTCCGCATCGGCTTTGGCGCGGAACTGAGGACCTTCCTCGAAATCTGCTCGGCAATTTTTGTGTGCGCGGAATCGACATGGTTCACCGACATGGCTCCGAATGGCCAGATCCACAATTGTTCAAAACCCTTGCTGCGCTGCAGAGCAATGTTTGGTTGAGTAATATGGGTAGGTTGCAGCTGCTTAGGGCTAAAGGCGATTATGTGGAAAGCATATTCAGTGGTGTGCAGTCACCACAGCTACTGCTTCTCTTACCACGGCTAGTATGGCTCTCCTGGGATTCATGCCCGTGCACTTCCCTACCTGCCTGGATTCCACTACAGCAGTTACGTGTTTTAGAAATAAACGGGAGCAAATTGGACACACTGTGGCCAGATGAAGATGATCAGGCACCTCTGAAGTTGAGAGAGTTGATTATTGATGCTCCTCTTTCAAAGATTCCAAAGTCAATTGGAAAGCTAAAAGATCTCGAAAAACTTGTGCTGCGCCAGAATGAACATGTGGAGGAGGCTAATCTCAAAACTTTTCTGGATGAACTCTGTCATCTGAAGTTTCTGAAATTCTTGGTGTTAAGGAAATGCTCAAATATGGAGTCACTGCCAGATTCCTTTGTAAACTTAACGAATCTCGAACATCTCGATTTGTCTGAGTGCTCCAAATTACAGAAGCTGCCAAGTTCCTTTGGGAAATTACAGAAACTCGAACTTATTGATTTATCTGGGTGTGTCAGGTTGAAAACGTTTCCGCCTAGACGTTGGAAACGTAAACAGCCTCCCAGAAATTAGTGAATGCTGCAAATATTCCAAATTCCATCGAGGACTTCATAACTTCCAATATACAAGTGCTCCAATCTACGTATACTTCCAAATTCCTAAATCAGTCAATTTTTGAATGAGATTTTTGTTGTAGTGTAAAAG

Ace file of the UniGene sp_v3.0_unigene1904

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	NBS/LRR	-	-	1.3e-08	-

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 264 aas, your sequence is shorter than subject: 795 - 1071

Fln protein: MENHNLPSPSSCPSTSASISYAHNNSYVYDVFINHRGPDCKKTLATDLYKRLRGYGLRVFLDEQELQEGDALPSQIKGAIQKASVHLAIFSQNYAQSSWCLDELVLMFRSGATILPVFYGSVKPAHLRWVEVNPEGQYARDLLELEQKTTFDIESRQNKPRYPPDTVKEWRQALSQAAGIIGFELVENYNGDQHQPIQRIVESVLKNVKRPVHVAKYPIGLDQKIEDFEKAVSLQPQRSETRVIGIVGLGGVGKTTLANEIFNRRQSKYDRACYLSDVSGKPVEFSQRKLLEDLARHFEQIADIKTGIDKIETYLASPLALLILILDNVDHINQLNALFVPLKDRLSPGSLVLITSRNKDVLINSGIEKSFIYELNGLDPQHSQELFCSHAFGQPNPRKGFEEMVKNFLDVTHGLPLSLQVFGASLCGEDDKKVWIAHFKKISKTLPDDITGRLKISYDSLDNEEKQMFLDIACFFMGEDSDTAIRIWGGSDWNGWLGLRKLQNRYLIEVDSGNRIRMHDHLRDLGRDIAEKESPHRLWRGTEDLPRNLLGNFCVRGIDMVHRHGSEWPDPQLFKTLAALQSNVWLSNMGRLQLLRAKGDYVESIFSGVQSPQLLLLLPRLVWLSWDSCPCTSLPAWIPLQQLRVLEINGSKLDTLWPDEDDQAPLKLRELIIDAPLSKIPKSIGKLKDLEKLVLRQNEHVEEANLKTFLDELCHLKFLKFLVLRKCSNMESLPDSFVNLTNLEHLDLSECSKLQKLPSSFGKLQKLELIDLSGCVRLKTFPPRRWKRKQPPRN*

Protein Length: 796

Fln nts: GGAAGGAAGAATTGCTGTTTTGATTTCAGCGATTGATTTGCACGCATTGAAACAGAACGCATTGAAACAGAAGAGACAGTGCCACAGGCTGTGCGAGTAGGTAGCCACATTGCAGTTTTGAGATCTTCCACACCAGAAGGAATTAGAAGATATTGAGGTTGAGTGCGCATTTCCGATCTTTTACTTACATCTTCATCTTACGTTTTTGCTACCCGATCC_-_ATGGAAAACCATAACCTGCCATCTCCATCCTCGTGCCCCTCCACCTCTGCATCAATCTCATATGCCCACAACAACTCCTATGTATATGATGTGTTTATAAACCACCGTGGGCCTGATTGCAAGAAAACTTTGGCCACCGATCTTTACAAACGCCTTCGCGGATACGGTTTGCGAGTGTTCCTGGACGAGCAGGAACTGCAAGAAGGAGACGCCTTACCTTCTCAAATCAAAGGTGCTATTCAAAAAGCATCCGTTCATTTAGCGATTTTCTCTCAAAATTATGCCCAATCGAGCTGGTGCCTGGACGAGCTCGTACTCATGTTCCGGTCTGGGGCAACCATTCTTCCGGTCTTCTACGGCAGTGTCAAGCCTGCACATCTTCGGTGGGTGGAGGTCAATCCTGAAGGACAGTATGCTCGAGATCTGCTCGAGCTCGAGCAGAAGACAACATTCGACATTGAATCCCGTCAAAACAAGCCACGTTACCCACCTGACACTGTAAAAGAATGGAGGCAGGCTCTTTCTCAGGCTGCAGGCATAATCGGTTTTGAACTAGTGGAGAATTATAATGGTGACCAGCATCAGCCCATCCAACGGATCGTGGAAAGTGTGTTAAAAAACGTTAAACGACCAGTCCATGTGGCGAAATATCCAATTGGTTTGGATCAAAAAATAGAAGATTTTGAAAAGGCAGTGTCATTGCAGCCGCAAAGAAGCGAGACTAGGGTTATAGGAATTGTAGGGCTGGGCGGCGTTGGCAAAACCACCCTCGCAAACGAAATCTTTAACCGTCGGCAATCAAAGTATGATCGAGCTTGCTATTTATCTGATGTCAGTGGGAAACCTGTTGAATTCTCGCAGAGAAAACTTCTTGAGGACTTGGCTCGACATTTTGAGCAAATAGCGGACATTAAAACTGGTATAGATAAGATCGAAACCTATCTCGCATCTCCTCTTGCTCTCCTAATCCTAATTTTAGATAATGTGGATCACATTAACCAGCTGAATGCATTATTTGTACCATTGAAAGATAGGCTTAGTCCAGGTAGCTTAGTTTTAATTACATCTCGCAATAAGGATGTTCTTATAAACTCGGGGATTGAAAAGTCGTTTATTTACGAGTTAAATGGCCTCGATCCACAACACTCCCAAGAGCTCTTCTGCTCTCATGCCTTCGGCCAGCCTAATCCTAGAAAAGGATTTGAAGAAATGGTTAAAAACTTTTTGGATGTCACCCACGGATTGCCGTTATCTCTTCAAGTATTTGGCGCGTCTCTTTGTGGGGAAGATGATAAGAAGGTTTGGATAGCACACTTCAAAAAAATCTCCAAAACACTTCCCGATGATATAACAGGGCGGCTTAAAATTAGTTACGATAGTCTCGATAATGAAGAGAAACAGATGTTCCTAGACATTGCCTGTTTCTTCATGGGAGAAGACAGCGATACTGCCATAAGAATCTGGGGCGGATCTGACTGGAACGGATGGTTGGGTCTTCGTAAACTACAGAACAGGTATCTAATAGAGGTGGACAGCGGAAATCGCATAAGAATGCACGACCACCTGAGAGACCTGGGCAGAGATATTGCAGAGAAAGAATCTCCGCATCGGCTTTGGCGCGGAACTGAGGACCTTCCTCGAAATCTGCTCGGCAATTTTTGTGTGCGCGGAATCGACATGGTTCACCGACATGGCTCCGAATGGCCAGATCCACAATTGTTCAAAACCCTTGCTGCGCTGCAGAGCAATGTTTGGTTGAGTAATATGGGTAGGTTGCAGCTGCTTAGGGCTAAAGGCGATTATGTGGAAAGCATATTCAGTGGTGTGCAGTCACCACAGCTACTGCTTCTCTTACCACGGCTAGTATGGCTCTCCTGGGATTCATGCCCGTGCACTTCCCTACCTGCCTGGATTCCACTACAGCAGTTACGTGTTTTAGAAATAAACGGGAGCAAATTGGACACACTGTGGCCAGATGAAGATGATCAGGCACCTCTGAAGTTGAGAGAGTTGATTATTGATGCTCCTCTTTCAAAGATTCCAAAGTCAATTGGAAAGCTAAAAGATCTCGAAAAACTTGTGCTGCGCCAGAATGAACATGTGGAGGAGGCTAATCTCAAAACTTTTCTGGATGAACTCTGTCATCTGAAGTTTCTGAAATTCTTGGTGTTAAGGAAATGCTCAAATATGGAGTCACTGCCAGATTCCTTTGTAAACTTAACGAATCTCGAACATCTCGATTTGTCTGAGTGCTCCAAATTACAGAAGCTGCCAAGTTCCTTTGGGAAATTACAGAAACTCGAACTTATTGATTTATCTGGGTGTGTCAGGTTGAAAACGTTTCCGCCTAGACGTTGGAAACGTAAACAGCCTCCCAGAAATTAGTGAATGCTGCAAATATTCCAAATTCCATCGAGGACTTCATAACTTCCAATATACAAGTGCTCCAATCTACGTATACTTCCAAATTCCTAAATCAGTCAATTTTTGAATGAGATTTTTGTTGTAGTGTAAAAG

Fln Alignment:

Contig1904___VYDVFINHRGPDCKKTLATDLYKRLRGYGLRVFLDEQELQEGDALPSQIKGAIQKASVHLAIFSQNYAQSSWCLDELVLMF---RSGATILPVFYGSVKPAHLRWVEVNP--------------------EGQYARDLLELEQKTTFDIESRQNKPRYPPDTVKEWRQALSQAAGIIGFELVENYNGDQHQPIQRIVESVLKNVKR---PVHVAKYPIGLDQKIEDFEKAVSLQPQRSETRXXXXXXXXXXXKTTLANEIFNRRQSKYDRACYLSDVSGKPVEFSQRKLLEDLARHFEQIADIKTGIDKIETYXXXXXXXXXXXXDNVDHINQLNALFVPLKDRLSPGSLVLITSRNKDVLINSGIEKSFIYELNGLDPQHSQELFCSHAFGQPNPRKGFEEMVKNFLDVTHGLPLSLQVFGASLCGEDDKKVWIAHFKKISKTLPDDITGRLKISYDSLDNEEKQMFLDIACFFMGEDSDTAIRIWGGSDWNGWLGLRKLQNRYLIEVDSGNRIRMHDHLRDLGRDIAE-KESPHRLWRGTEDLPRNLLGNFCVRGIDMVHRHGSEWPDPQLFKTLAALQSNVWLSNMGRLQLLRAKGDYVESIFSGXXXXXXXXXXXXXXXXXXDSCPCTSLPAWIPLQQLRVLEINGSKLDTLWPDEDDQAPLKLRELIIDAPLSKIPKSIGKLKDLEKLVLRQNEHVEEANLKTFLDELCHLKFLKFLVLRKCSNMESLPDSFVNLTNLEHLDLSECSKLQKLPSSFGKLQKLELIDLSGCVRLKT
C0PQE2______________VYNVFINHRGPDVKNGLASHIYRRLIDHGLKVFLDKPEMQEGEPITPQIKRAIRTASVHIAIFSKGYADSTWCLDELLDMLDTVKSGSAILPVFY-NVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFEL-NACNGDERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQRKKARVVGIVGLGGIGKTTLAKKIYNREKSNYKRICLLRDVRSSNLHSLQSRLLKELNQSSAQINDIDEGIEKLKTYSERALIVL----DDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGK-DLWYWKEQLGKTSTILPRKVRSTLEISFDALDKQEKEVFLDIACFFIGENRDT-IRI-----WDGWLNLENLKNRCLVEVDSENCLRMHDHLRDLGRDLAENSEYPRRIWRMTDSLLHNVSDQSPVRGISMVHRNGSERS-----------------CNLSNCKLLKAESHFVEQVLSN-------GQLLPLIYLRWENYPKSSLPPSLPSMNLRVLHIQGKQLKTLWQHE-SQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVL------YNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCSTLQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain