SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1075

Length: 1341 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1075

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding protein [Arabidopsis thaliana] gb\|AEE83354.1\| zinc ion binding protein [Arabidopsis thaliana]	-	-	4.0e-37	36%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	36%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SUK0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 297 aas, your sequence is shorter than subject: 302 - 697

Fln protein: MRKWEKISELKVQHPEVLIEFSAKDLSWKDVKGNKVAIIPYSRLGDFISGEKSIEDAPTQFVVKTRRVKQEEEIKHARVDTYLEYAIYWCAYGPETYKKADKNAPQCKKKKRSPRESIKVGCTCHFIIRRLYSRPHDVVIIYNASKHIDGSGIVCHGKDVVGRPQSFNYAPHLSKNLRDSVAKMIEDGFNVTMVWEKFISDVKHGSGELFTGVTRDALMTRKDVLNIYNSIKRQEYQGHRWTLCKNNDKRDEGAEMQNTQSDSDSSSAVVDIEEPARRLILDLNIPSLLENHDQKLLQISL*

Protein Length: 303

Fln nts: GTGTTGGATAGGTATTGCCCACAATTTGAAGTTGGTGCAATTTTCTTTTCCCAGTGCTGCGAACAGGGACTAGTTTGGTCTGATTCCCACTATTGATAGATTGAAGGGAGGAGCAGCAGTAAGGGCTCACAGGCATTCAAACAATTCCAATTTGCAGGGAACTTGAAA_-_ATGCGCAAGTGGGAGAAGATTTCTGAGCTGAAGGTCCAACACCCAGAAGTTCTGATAGAGTTCTCAGCGAAAGATTTGAGTTGGAAAGATGTTAAGGGGAATAAAGTTGCAATAATTCCCTATAGTAGGCTTGGTGACTTTATAAGCGGAGAGAAATCAATTGAAGATGCCCCCACTCAATTTGTTGTCAAAACCCGACGAGTTAAACAAGAGGAAGAGATTAAACATGCCCGTGTCGACACATATTTGGAATATGCAATTTATTGGTGTGCATATGGTCCAGAGACCTATAAAAAAGCCGATAAGAATGCACCACAGTGTAAGAAAAAGAAACGTAGCCCACGTGAAAGCATTAAAGTTGGTTGCACATGTCACTTCATTATCCGCCGACTTTACTCTAGACCGCATGATGTTGTTATAATATACAACGCTTCTAAGCACATTGATGGGTCTGGCATTGTGTGTCATGGGAAGGATGTAGTCGGCAGGCCTCAGTCATTCAATTATGCACCACATCTATCAAAGAATTTACGAGATAGTGTTGCAAAAATGATTGAAGATGGTTTCAATGTGACTATGGTCTGGGAGAAATTCATATCTGATGTGAAACATGGATCTGGTGAGCTGTTTACAGGGGTAACCCGAGATGCCTTGATGACAAGGAAGGATGTCTTAAACATTTACAATAGTATCAAAAGGCAAGAATATCAGGGCCACAGGTGGACTCTTTGCAAGAATAATGATAAAAGAGACGAAGGAGCTGAGATGCAAAACACTCAAAGTGATTCAGACTCTTCTTCTGCTGTAGTAGACATCGAGGAACCTGCTAGAAGGCTAATTTTGGACCTCAATATTCCTTCACTTCTTGAAAATCATGATCAGAAGCTGCTACAGATCAGCCTTTGACAATACTTCTCATATCTTTGTTTTGTGCCTTATATTTTTCTTTTTAGAGATGTTAAACTGTTTCTTCTGCCTTGGACGTGGAGTGTGCTTAAAATCAGTCCAAGGATTGAATGCATGCACAGTTCCCTGAGTAAGATGAGGGGTCCGTTTTGTCTGTTTTGCTGTGAAGAATGAAAGAATGCTTGTTTTTGTGTATCTTATTTAAATGAATACGGTACTGTGAAATTGATCACCCCAGATCTCAACAAAGAAAATTTCTTTGCCGTG

Fln Alignment:

Contig1075___KMRKWEKISELKVQHPEVLIEFSAKDLSWKDVKGNK-----VAIIPYSRLGDFISGEKSIEDAPTQFVVKTRRVKQEEEIKHARVDTYLEYAIYWCAYGPETYKKAD-------KNAPQCKKKKRSPRESIKVGCTCHFIIRRLYSRPHDVVIIYNASKHIDGSGIVCHG---KDVVGRPQSFNYAPHLSKNLRDSVAKMIEDGFNVTMVWEKFISDVKHGSGELFTGVTRDALMTRKDVLNIYNSIKRQEYQGHRWTLCKNNDKRDEGAEMQNTQ
D7SUK0______________KMPRMEDILNLPVQDPPCA-EFSAAHINWKKVEGGRQGGDDIALIPFSRVDDFVKGESTNAECPASFRIESRRKRPEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGLGDSSNNKPASGKGSRPGRRHMMRGCLCHFTVKRLYTRPSLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM--YAPRISEELRQKVMSMLYVGISLDNIIQHHMEVVQNHGGP----HNRDDFLTRNDVRNMERVIRNSSH------MLLDNDECSVKAWMQRHQ

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
619			33	66	0.997452
678	66	33			0.997452
813	85			14	0.993533
814		14	85		0.993533
815	85		14		0.993533
826	71		14		0.984337
828	85			14	0.993533
829	85		14		0.993533
830			85	14	0.993533
831		14	85		0.993533
833	85	14			0.993533
834			85	14	0.993533
835		14	85		0.993533
921		83	16		0.994512
925		14	85		0.993533
927	85			14	0.993533
928		14	85		0.993533
929		85	14		0.993533
933		14	85		0.993533
934	85			14	0.993533
937		85	14		0.993533
938	85	14			0.993533
939	85			14	0.993533
940	85		14		0.993533
941	85			14	0.993533
984		38		61	1.0
1078	14			85	0.993533
1079	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain