SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene362

Length: 870 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene362

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRP38_assoc multi-domain protein	-	-	3.0e-11	22%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	44%

Source	Gene names
Sma3	At5g25060; GSVIVT00032794001; Os02g0179900; OsI_06097; OsJ_05621; P0544B02.29-1; P0544B02.29-2; PHYPADRAFT_193248; PHYPADRAFT_234486; POPTRDRAFT_819630; POPTRDRAFT_825788; RCOM_0920760; T30N20_70; VITISV_025939;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	mRNA splicing factor, Cwf21	IPR013170	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6H346

Fln msg: STOP codon was not found. Distance to subject end: 58 aas, your sequence is shorter than subject: 289 - 964

Fln protein: GTLPRNAGVVGTSKSSIPRPDLKPLTGNSMKTHPVLQASKWTREDDGIDTEEKAELKGLGLNYSSSGSDDIFGGSGKEDKQEVTVDSIASAPNDSGMDEGRRQKLRQLEVTLMEYRESLEERGTKNAEEIERKVSAHRKRLEAEYGLIDPVTDKDTRSDSGYHRHSSRMAERFSLEQKERRDDNRDSSSKKRSRSGNRSKSPSHRLSKDREREDREKGFDGDGEGDPDTVSVRRERDGNRDRIRDTDAGRGRGRSGSREHDNHDRDRDRDRERGKGRERDRDRDREREK

Protein Length: 290

Fln nts: TGGAACTTTACCAAGAAATGCTGGTGTGGTGGGGACCTCAAAGTCATCAATTCCACGGCCAGATCTAAAACCTTTAACAGGCAATTCTATGAAAACACATCCTGTATTACAGGCTTCAAAGTGGACTCGTGAGGACGATGGAATTGATACAGAGGAAAAGGCAGAGCTTAAGGGACTTGGTTTGAATTACTCTTCTTCTGGTAGTGATGACATATTTGGGGGTTCTGGGAAAGAAGACAAACAAGAAGTCACAGTGGACAGCATTGCTTCTGCTCCTAATGACTCTGGAATGGATGAAGGTCGCAGGCAAAAGCTACGCCAATTGGAGGTAACACTCATGGAGTATCGTGAGTCTCTTGAAGAACGTGGCACTAAGAATGCTGAAGAAATTGAAAGAAAAGTCTCTGCCCACAGAAAGAGATTAGAAGCTGAATATGGCTTAATAGATCCTGTGACTGATAAAGACACTAGATCAGATTCTGGATACCACAGGCATTCATCTCGCATGGCAGAGAGATTCTCTCTGGAACAGAAGGAAAGGCGAGATGATAATAGGGATTCATCTTCAAAAAAGCGTAGTCGCAGTGGGAACCGTAGCAAGAGTCCCTCACACAGATTAAGTAAAGACAGGGAAAGAGAGGACAGGGAGAAGGGTTTTGATGGGGATGGGGAAGGAGATCCTGATACTGTTTCTGTTCGTCGTGAAAGAGATGGTAATAGAGATAGGATTCGTGATACTGATGCTGGAAGGGGGAGAGGGAGGAGCGGCAGTAGAGAACATGACAATCATGACAGGGATAGGGACAGAGACAGGGAGAGGGGCAAGGGAAGAGAGAGGGACAGGGATCGTGATAGAGAAAGGGAAAAGGA

Fln Alignment:

Contig362___IPRPDLKPLTGNSMKTHPVLQASKWTREDDGIDTEEKAELKGLGLNYXXXXXXXXXXXXXKEDKQE-VTVDSIASAPNDSGMDEGRRQKLRQLEVTLMEYRESLEERGTKNAEEIERKVSAHRKRLEAEYGLIDPVTD-----------KDTRSDSGYHRHSSRMAERFSLEQKEXXXXXXXXXXXXXXXXXXXXXXPSHRLSKDREREDREKGFDGDGEGD
F6H346_____________IPQPELKAFT-NKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDS---RETTRKRHRSRSQSEDGDRERHRDRSHDPESEKGRDRERDREKSGSREREDHDRDRGRERERD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
269			20	80	0.995493
421	66		33		0.997452
793		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain