SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene300

Length: 1608 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene300 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin family member 4/7/21/27 [Arabidopsis thaliana] gb\|AED97398.1\| kinesin family member 4/7/21/27 [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Kinesin-like protein	-	-	1.754e-10	-

Source	Gene names
Sma3	At3g50240; At5g47820; CHLREDRAFT_13743; CHLREDRAFT_185750; CHLREDRAFT_99525; F11C1_80; FLA10; FRA1; GSVIVT00014868001; GSVIVT00015103001; GSVIVT00017472001; GSVIVT00019544001; MICPUCDRAFT_17639; MICPUCDRAFT_4372; MICPUCDRAFT_4389; MICPUN_113650; MICPUN_63

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	cellulose microfibril organization	GO:0010215	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60930.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:24515398-24522511 REVERSE LENGTH=1294	65%
RefSeq	Arabidopsis thaliana	NP_200901.2	kinesin family member 4/7/21/27 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002301096.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 123 aas, No stop codon before M and low homology subject,

Fln protein: MTETPEKDVPQCVQVAVHIRPLIGFERAQGCKDCITVVPGEPQIQIGAHSFTFDHVYGSTASPSSAIFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGYTLGGNTEGIIPLVMEAIFKKVKELKDKGEILLKVSFIEILKEEVHDLLDPNPPATAKLDGPGSGKPTLHVKAPIQIRETANGGINLTGVTEIDVTAQEEMASVLAQGSLCRATGSTNMNNQSSRSHAIFTINMVNKRKWDAASSGDPGTAEDRCEDFVCAKLHLVDLAGSERAKRTGADGLRFKEGVHINKGLLALGNVISALGDEKKRKEGGHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADTNAEETLNTLKYANRARNIQNKAIINRDPAVAEMQRMRNQLEYLQAELHCYRAGGVSSDEVQVLKHKISWLEASNAELRQELRECHESSQLLEERMMDAQILKDKLCLKLEQSRNGKTWKEIDDDDDDSQGVDLIKGYLSKIQELENEVQRLQASVNSQPTRATRSSAFVDRLDIDNNT

Protein Length: 531

Fln nts: AATGTCTGCTTCATTCA_-_ATGACGGAGACGCCGGAGAAAGATGTTCCGCAGTGTGTTCAAGTCGCTGTCCACATTCGGCCTCTCATTGGATTTGAGCGCGCTCAGGGATGTAAAGATTGCATCACCGTTGTTCCAGGCGAGCCTCAGATTCAAATTGGAGCTCATTCATTTACCTTTGATCATGTTTATGGTAGTACGGCTTCTCCCTCCTCTGCCATTTTTGAAGAGTGTGTTGCTCCACTTGTTGATGGATTATTCCAGGGATACAATGCTACAGTTCTTGCATATGGTCAGACTGGTTCGGGAAAGACGTACACAATGGGAACAGGATATACACTTGGTGGAAACACGGAAGGAATTATTCCTTTGGTTATGGAGGCCATATTTAAAAAAGTCAAAGAGTTGAAGGACAAGGGAGAAATCCTGTTAAAGGTTTCATTTATTGAGATTCTGAAAGAAGAAGTGCATGATCTACTTGACCCAAATCCTCCAGCTACAGCGAAGCTAGATGGTCCTGGTAGTGGAAAGCCAACACTTCATGTAAAGGCACCCATACAAATTCGGGAAACAGCTAATGGTGGAATAAATCTTACAGGTGTAACAGAGATAGATGTCACCGCTCAAGAAGAAATGGCTTCTGTTTTAGCTCAAGGGTCATTGTGTCGAGCTACTGGAAGCACTAACATGAATAATCAATCCAGTCGTTCCCATGCTATCTTTACAATCAACATGGTGAATAAGCGGAAATGGGATGCGGCATCAAGTGGTGATCCAGGTACTGCAGAAGATCGGTGTGAAGATTTTGTATGTGCAAAGCTTCACTTAGTGGATCTTGCAGGTTCTGAACGAGCCAAGAGGACAGGTGCGGATGGTCTCCGCTTCAAAGAAGGTGTTCACATTAACAAGGGTTTATTGGCACTTGGAAATGTCATAAGTGCATTGGGAGATGAGAAAAAGCGCAAAGAAGGTGGTCATGTTCCCTACAGAGATAGTAAATTGACTCGCCTCTTGCAGGATTCTCTTGGAGGAAACAGCAGAACTGTAATGATTGCCTGTGTCAGTCCTGCTGACACAAATGCTGAAGAAACACTCAATACTCTGAAGTATGCAAATCGAGCTCGCAACATTCAGAACAAGGCTATTATAAACCGTGACCCAGCAGTTGCTGAGATGCAAAGAATGAGGAATCAGTTAGAGTATTTGCAAGCTGAGCTTCATTGTTATCGTGCTGGAGGTGTCTCATCTGATGAGGTGCAGGTTCTAAAGCATAAAATCTCTTGGCTTGAAGCAAGCAATGCAGAGCTTCGACAGGAGCTCCGAGAGTGTCATGAAAGCTCCCAACTTTTAGAAGAACGCATGATGGATGCACAGATCCTGAAAGACAAGTTGTGTCTGAAACTGGAGCAATCACGCAATGGAAAGACATGGAAAGAGATTGATGATGATGATGATGATTCCCAGGGTGTGGATTTGATCAAAGGTTACTTGTCAAAAATACAAGAGCTGGAAAATGAAGTGCAACGGTTACAAGCTTCAGTGAATTCTCAACCTACCAGGGCTACTCGATCCAGTGCTTTTGTTGATCGTCTTGATATTGATAATAATACGC

Fln Alignment:

Contig300___IRETANGGINLTGVTEIDVTAQEEMASVLAQGSLCRATGSTNMNNQSSRSHAIFTINMVNKRKWDAASSGDPGTAEDRCEDFVCAKLHLVDLAGSER-AKRTGADGLRFKEGVHINKGLLALGNVISALGDEKKRKEGGHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADTNAEETLNTLKYANRARNIQNKAIINRDPAVAEM
D5ACB2_____________MREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGR-----------TVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQI-----HIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
480		14		85	0.993533
537	14		85		0.993533
538		14		85	0.993533
539	14		85		0.993533
541		85		14	0.993533
555	12	87			0.992554
556	87			12	0.992554
558			87	12	0.992554
636		25		75	0.996473
637	25		75		0.996473
638	75			25	0.996473
639		75		25	0.996473
1074	50		50		1.0
1102		16		83	0.994512
1103	16	83			0.994512
1105	83			16	0.994512
1115		40		60	1.0
1160	20		80		0.995493
1161	80	20			0.995493
1164		80		20	0.995493
1260		50		50	1.0
1285	20		80		0.995493
1286	20			80	0.995493
1288		80	20		0.995493
1289		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
155	173	ATC ATC ATC ATC ATC ATC A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain