SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene245

Length: 1743 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene245

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam04146, YTH, YT521-B-like domain	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Yth domain-containing protein, putative	-	-	4.285e-27	-

Source	Gene names
Sma3	AT3G03950; AT3G17330; At1g09810; At1g55500; At1g79270; At3g03950; At3g13060; At3g13460; At3g17330; At5g58190; At5g61020; B1144G04.45-1; B1144G04.45-2; B1144G04.45-3; F13K9.7; F21M12.20; GSVIVT00002122001; GSVIVT00002804001; GSVIVT00017035001; GSVIVT000196

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	calcium-mediated signaling	GO:0019722	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Pseudouridine synthase I, TruA	IPR001406	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79270.1	ECT8 evolutionarily conserved C-terminal region 8 chr1:29816157-29818811 FORWARD LENGTH=528	58%
RefSeq	Arabidopsis thaliana	NP_565205.1	uncharacterized protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002297841.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 53 aas, putative chimeric sequence, your sequence is shorter than subject: 388 - 667

Fln protein: IMIV*DQLWHNGWIQEI*GTLKAMVFHLGSIQQLVKISQLLDCHLHSKQFIYPISQPTLQPPSGIPFVIPSPASQLRINDGLTSYQVETGGSNSGLMVDHKRWVGNNDYFDNGQTIHGGSNDPMQHPTIRPASQRVISSGQAEGQSVFSDRVNEVLRVFGDGESYNRLDFITKYDDAKFFVIKSYSEDDIHKSIKYSVWASTPNGNQKLNLAFEDAQLRAGDNPGGCPIFLFFSVNGSGRFCGVAEMVGPVDFSKSMDFWQQDKWTGSFSVRWHIIKDIPNSQLRHIILENNDNKPVTNSRDAQDINLQEGLEMLDIFKNYPARSSIVEGFNLYESRQRALQEKRARQKAQPQIRQVENLRMEHFSDLNIKADSSDPPQSSSMHRPE*

Protein Length: 389

Fln nts: ATTATGATAGTATGAGACCAGCTATGGCACAATGGATGGATCCAAGAAATATAGGGGACCCTCAAAGCAATGGTATTTCATCTGGGATCCATTCAACAATTGGTCAAAATTTCCCAGCTATTGGATTGCCACCTCCACAGCAAGCAGTTTATCTACCCCATATCACAGCCAACTTTACAACCTCCGAGTGGTATTCCTTTTGTTATTCCTTCGCCTGCTTCACAATTGAGAATAAATGATGGTCTAACTTCCTATCAAGTAGAAACAGGAGGCAGCAACTCAGGTTTGATGGTAGACCATAAACGGTGGGTTGGAAATAATGACTACTTTGACAATGGGCAAACGATCCATGGTGGCTCAAATGATCCAATGCAACATCCAACAATAAGGCCGGCAAGTCAGCGAGTGATATCTAGTGGTCAGGCTGAGGGACAAAGTGTGTTTTCAGACAGAGTTAATGAAGTTCTTAGAGTCTTTGGTGATGGTGAAAGTTACAATCGTTTGGATTTTATTACCAAGTATGATGATGCAAAGTTCTTTGTTATCAAATCCTACAGTGAAGATGATATTCACAAAAGCATAAAGTACAGTGTGTGGGCAAGCACACCCAATGGCAACCAGAAGTTGAATCTAGCATTTGAGGATGCACAGTTGAGAGCTGGTGACAATCCTGGAGGTTGTCCAATATTCCTTTTCTTCTCAGTGAATGGAAGTGGACGATTTTGTGGTGTGGCAGAAATGGTAGGACCCGTGGATTTCAGCAAAAGTATGGATTTCTGGCAGCAGGATAAATGGACTGGGAGTTTTTCAGTCAGATGGCATATCATAAAAGATATTCCTAACTCTCAGCTACGCCACATTATACTTGAAAACAATGACAATAAGCCCGTTACAAATAGCAGGGATGCACAGGATATCAATCTTCAGGAAGGCCTTGAAATGCTGGATATTTTCAAGAATTATCCTGCAAGGTCTTCCATTGTTGAGGGTTTTAATCTTTATGAGAGCCGCCAAAGGGCACTACAAGAAAAACGGGCTAGACAGAAAGCACAACCTCAGATTCGTCAGGTCGAGAATCTCAGGATGGAACATTTTTCTGATTTGAACATTAAAGCTGACTCTAGTGATCCACCACAGTCTAGTTCAATGCACCGTCCAGAATAG___GATTTGGGGATGGAGTTCAAAGGAGGAGAGGTTGGTAGACAAAAGAAATATTATTTACCAAGCTTGACAAAATCCACAGCAACAACCAATTGCCTGCCTTGTATCTAGGTCATGATTTTCTTGATGATTTGAGTGTACAGTATTCTTCAATTTTGATTCCAGAGGTTGACACTGGCTGGAGAAGGGATGAACTTGCAAAATGTATTTGATGTTTCAGGGTTCATCTGAATATTTTTGCTTAAGCTATGTTCAAGCTTAAGAGGGAATCCAGTTTAACAAGTTCATGTGTATGACAGGGATCCTTGAGGAAGTGATCTGTCTGATGCACAAGATGGGGGTGCAGAAACCATTGTCTAGATTATCTTGCAATCTATATAAAATCATTAACATGTTTTGAGGGTCACATGTATCTCAAGATTATGGCACCTTGATATAAAACAAGGTGTAAATTTGAAGTGATCTTCTTCAAGCAAGTCTTCGTAGTCTTGTGCCATATGCATTGATAACATGATTATGTTCTTGTCTTACAGATTCCATAATATTTGAATTGAATGATTCTGTGGATCAGGGCTTATGTTT

Fln Alignment:

Contig245___GNNDYFDNGQTIHGGSNDPMQHPTIRPASQRVISSGQAEGQSVFSDRVNEVLRVFGDGESYNRLDFITKYDDAKFFVIKSYSEDDIHKSIKYSVWASTPNGNQKLNLAFEDAQLRAGDNPGGCPIFLFFSVNGSGRFCGVAEMVGPVDFSKSMDFWQQDKWTGSFSVRWHIIKDIPNSQLRHIILENNDNKPVTNSRDAQDINLQEGLEMLDIFKNYPARSSIVEGFNLYESRQRALQEKRARQKAQPQ
D5A886_____________GNGNLDALNEQNRGPRISKMRNPWLSPVDANTGAHGLVENSENCAPEVNR--------DQFNRADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVAKERSGGNPGSCPVFLFFSVNASGQFCGVAEMVSSVDFHTSMNFWQQDKWNGFFPVKWHIIKDVPNSQFRHIILENNDHKPVTNSRDTQEIKFTQGIEMLNIFKNYMAKTSILDDFVFYENRQKTMQDKK-RQSNQPE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
833	87		12		0.992554
1007	25		75		0.996473
1008	25	75			0.996473
1009		75		25	0.996473
1011		75		25	0.996473
1184	88		11		0.923564
1245	75		25		1.0
1565	25	8		66	1.0
1567	72	27			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain