SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189

Length: 2251 nt

UniGene Fasta

>sp_v3.0_unigene189
TACCCACAATTTTATACTTTTTCTGCCTCAAAACCCCGAACTGGAGCATTTCACGCTACAACGAAGCAAGGCAAAGGCAAAGGCAAAAGGGAGAAGAAAACGCCGAACTGGAGCATTTCACGCTACAACGAAGCAACGAAAAGGAAAAGGCAAAAGGGAGAAGGTAAAGGTAAAGGCAAAGGTCAAGGCCAAAAGGAAACTATTTCCGTTTATTGGTTTGCTCCGGAAAACCAACTAGATCTTTAAACCAGACTAGACCTGCGTTTGAAGCCGGTGCTCTGGTCTGGATTTCAAACCCTTGTATGTCCTGAAATCTTGAACACGAAGGGAGGCTGAAAAGGCCGTTGAAACTAATTCGAGAGGCGGCACAGAGCAGAGGGAAAAAGCATGGCGGAAGCAGATGACGCAGCAGCCCGTCTACACGCAGTTAGAGAGTACAGGAATAAGCTTCTTCAGCACAAGGAGCTCGACGCCAGAGTTCGCGCACTTCGAGAAAACTTGAGGAATGCCAAGAAGGATTTTGACAAAACTGAAGATGATTTAAAATCTCTTCAAAGTGTTGGTCAAATCATAGGAGAAGTGCTTAGACCACTTGATAATGAACGCTTGATTGTCAAAGCTAGCAGTGGTCCTAGATATGTGGTTGGCTGCCGGAATAAGGTGGATAAGGAGAAGCTCACTGCAGGAACACGAGTTGTTCTAGACATGACAACCCTCACAATAATGCGTGCTCTGCCTCGTGAGGTGGACCCGGTTGTATATAATATGCTTCACGAAGATCCTGGCAATGTCAGTTACTCTGCTGTGGGAGGGTTGGCAGATCAAATAAGGGAACTTAGAGAGTCTATCGAACTTCCTCTTATGAATCCTGAACTCTTTATTAGAGTTGGAATCAAGCCTCCCAAGGGGGTTCTTCTATATGGTCCTCCTGGTACAGGTAAAACACTGTTGGCAAGAGCTATTGCCAGTAATATTGACGCCAATTTCCTAAAGGTTGTTTCAAGTGCTATAATAGATAAATATATTGGTGAAAGTGCTAGGCTGATAAGGGAAATGTTTGGATATGCACGAGATCATCAACCATGCATTATTTTTATGGATGAAATAGATGCAATTGGTGGACGCCGTTTCAGTGAAGGAACTAGTGCTGATAGAGAGATTCAGAGGACACTGATGGAATTACTTAATCAACTAGATGGGTTTGATCAGTTGGGAAAAGTAAAAATGATTATGGCAACCAATCGACCAGATGTTCTAGACCCTGCTTTACTTCGACCTGGTCGCTTGGATCGTAAGATTGAAATTCCATTACCAAATGAACAAGCAAGAATGGAAATTTTGAAAATACATGCTGCAGGAATAGCAAAACATGGAGACATAGATTATGAAGCTGTAGTGAAGCTGGCTGAGGGCTTCAATGGAGCAGACCTTCGAAATGTTTGCACAGAAGCTGGCATGTCAGCCATCCGAGCGGAGCGTGATTATGTAATTCATGAAGATTTTATGAAGGCTGTTCGGAAATTGAATGAAGCAAAGAAGCTAGAGTCCACTTCACACTATAATGCAGACTTTGGAAAGGACTAGTAAAATGATGAAGAAACAGCAAGCCAACAAGAGATCATCTCTGCAAATCTAGTTTATTTTGGGGCCATTTTCCTTTGCACTTGTTATAGTTTTCATTATTGAGATGCCCGTTTTATGATTCATGTTCTTAAGTGTCATTTGATGGCAATTATTTCCATATCCTCCTAATTATTGGACAATCACATTGCGATGCTTTGGGAAAAGAATATGCAAATAGTATTTGCTTGTCTTGCAGAAGATCACCAATCACCATCTTTCAAAGCTTGGACATCTTATCTAAACATCTGAGTAACTATGTGATCAGATTTTGAGAACTTTCATCATGAGTTTCGTGGGATATGTTCAATCTTAACCTTTCATCAAAATCTTGGATGAAATTTGAGTTGACATCCGGGCACTTCATATAATTGAACTTGTATGGAAGGACAGGTTAACCTCCAATGCATTGTATTACTTGAGTTTCAACATTTCTCAACATATTCTCATGTTTTATTACTACCTGATGCAGGTATTCATATCCTTTCTAAATTCTATATACGGTCTAATATGATTAGTTGTATTTATTCGTATAGTATTCTCATATATTTTCCTGCTGGTCATCGTCATTACACAGTCTACTCAATACCGATGTACATTTTACCAGAGTTCCTGAGAAATTCCAGGAATG

Ace file of the UniGene sp_v3.0_unigene189

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 10B homolog A n=2 Tax=Arabidopsis RepID=PS10A_ARATH	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43010.1	RPT4A regulatory particle triple-A ATPase 4A chr5:17248563-17251014 REVERSE LENGTH=399	92%
RefSeq	Arabidopsis thaliana	NP_199115.1	regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002313775.1	predicted protein, partial [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWQ8

Fln msg:

Fln protein: MAEADDAAARLHAVREYRNKLLQHKELDARVRALRENLRNAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESTSHYNADFGKD*

Protein Length: 400

Fln nts: TACCCACAATTTTATACTTTTTCTGCCTCAAAACCCCGAACTGGAGCATTTCACGCTACAACGAAGCAAGGCAAAGGCAAAGGCAAAAGGGAGAAGAAAACGCCGAACTGGAGCATTTCACGCTACAACGAAGCAACGAAAAGGAAAAGGCAAAAGGGAGAAGGTAAAGGTAAAGGCAAAGGTCAAGGCCAAAAGGAAACTATTTCCGTTTATTGGTTTGCTCCGGAAAACCAACTAGATCTTTAAACCAGACTAGACCTGCGTTTGAAGCCGGTGCTCTGGTCTGGATTTCAAACCCTTGTATGTCCTGAAATCTTGAACACGAAGGGAGGCTGAAAAGGCCGTTGAAACTAATTCGAGAGGCGGCACAGAGCAGAGGGAAAAAGC_-_ATGGCGGAAGCAGATGACGCAGCAGCCCGTCTACACGCAGTTAGAGAGTACAGGAATAAGCTTCTTCAGCACAAGGAGCTCGACGCCAGAGTTCGCGCACTTCGAGAAAACTTGAGGAATGCCAAGAAGGATTTTGACAAAACTGAAGATGATTTAAAATCTCTTCAAAGTGTTGGTCAAATCATAGGAGAAGTGCTTAGACCACTTGATAATGAACGCTTGATTGTCAAAGCTAGCAGTGGTCCTAGATATGTGGTTGGCTGCCGGAATAAGGTGGATAAGGAGAAGCTCACTGCAGGAACACGAGTTGTTCTAGACATGACAACCCTCACAATAATGCGTGCTCTGCCTCGTGAGGTGGACCCGGTTGTATATAATATGCTTCACGAAGATCCTGGCAATGTCAGTTACTCTGCTGTGGGAGGGTTGGCAGATCAAATAAGGGAACTTAGAGAGTCTATCGAACTTCCTCTTATGAATCCTGAACTCTTTATTAGAGTTGGAATCAAGCCTCCCAAGGGGGTTCTTCTATATGGTCCTCCTGGTACAGGTAAAACACTGTTGGCAAGAGCTATTGCCAGTAATATTGACGCCAATTTCCTAAAGGTTGTTTCAAGTGCTATAATAGATAAATATATTGGTGAAAGTGCTAGGCTGATAAGGGAAATGTTTGGATATGCACGAGATCATCAACCATGCATTATTTTTATGGATGAAATAGATGCAATTGGTGGACGCCGTTTCAGTGAAGGAACTAGTGCTGATAGAGAGATTCAGAGGACACTGATGGAATTACTTAATCAACTAGATGGGTTTGATCAGTTGGGAAAAGTAAAAATGATTATGGCAACCAATCGACCAGATGTTCTAGACCCTGCTTTACTTCGACCTGGTCGCTTGGATCGTAAGATTGAAATTCCATTACCAAATGAACAAGCAAGAATGGAAATTTTGAAAATACATGCTGCAGGAATAGCAAAACATGGAGACATAGATTATGAAGCTGTAGTGAAGCTGGCTGAGGGCTTCAATGGAGCAGACCTTCGAAATGTTTGCACAGAAGCTGGCATGTCAGCCATCCGAGCGGAGCGTGATTATGTAATTCATGAAGATTTTATGAAGGCTGTTCGGAAATTGAATGAAGCAAAGAAGCTAGAGTCCACTTCACACTATAATGCAGACTTTGGAAAGGACTAG___TAAAATGATGAAGAAACAGCAAGCCAACAAGAGATCATCTCTGCAAATCTAGTTTATTTTGGGGCCATTTTCCTTTGCACTTGTTATAGTTTTCATTATTGAGATGCCCGTTTTATGATTCATGTTCTTAAGTGTCATTTGATGGCAATTATTTCCATATCCTCCTAATTATTGGACAATCACATTGCGATGCTTTGGGAAAAGAATATGCAAATAGTATTTGCTTGTCTTGCAGAAGATCACCAATCACCATCTTTCAAAGCTTGGACATCTTATCTAAACATCTGAGTAACTATGTGATCAGATTTTGAGAACTTTCATCATGAGTTTCGTGGGATATGTTCAATCTTAACCTTTCATCAAAATCTTGGATGAAATTTGAGTTGACATCCGGGCACTTCATATAATTGAACTTGTATGGAAGGACAGGTTAACCTCCAATGCATTGTATTACTTGAGTTTCAACATTTCTCAACATATTCTCATGTTTTATTACTACCTGATGCAGGTATTCATATCCTTTCTAAATTCTATATACGGTCTAATATGATTAGTTGTATTTATTCGTATAGTATTCTCATATATTTTCCTGCTGGTCATCGTCATTACACAGTCTACTCAATACCGATGTACATTTTACCAGAGTTCCTGAGAAATTCCAGGAATG

Fln Alignment:

Contig189___RLHAVREYRNKLLQHKELDARVRALRENLRNAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESTSHYNADFGKD
A9NWQ8_____________RLHAVNEYRKKLLQHKEFDARVRTLRENLRTAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1363	16		83		0.994512
1473	71		28		1.0
1603	80		20		0.999996
1604		20	80		0.999996
1649		15	84		0.999986
1694	81		18		0.999994
1801	88		11		0.999937
1908		88		11	0.999952
1974		62		37	1.0
1977	62		37		1.0
1980		37		62	1.0
2046		6		93	0.999364
2057	21	57		14	1.0
2083		63	36		1.0
2109	22			77	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
68	87	AAGGCA AAGGCA AAGGCA AA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain