SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167

Length: 2013 nt

UniGene Fasta

>sp_v3.0_unigene167
GACCTTAAGCCATCATGGATCAATCAGTCCATCAGAATATATATGTATGGATGTAAGGTAAAAACGATTATCGATCTACAAAAATATGGCGGAAGGAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGGCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAACTGGAATCCGAGGAGGAGGAGGAGGAGGAATTGGGGGATTCAGCACCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGCTCTCAACTCCACCTCTCTGCATCATCGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAATTTGGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCCCTTGATCAACTTCAACATGATGGCAAGCAGGCCGCCTTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCTATTACTCCCTCCGATTTGCAGCATATCGCTCCTCCCTTTCCTCCCGGAGGTGGAGGGCCTCCTCCGCCGCCTGGACGAGGGCATCCACCTCCTCCTGCAGGTGGGCCTCAAGGTTCCAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCGTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATGGCGCAATCCGCGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGAAATGGTTGAATTCCAAGGCGCCTGCATCTGTTCTCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCTTGGACTGGAAGCTGCGCAGAAGCCATTCATTTGGGTCTTACAGGATCACCATGATCGTCCTCCCCCTCCTGATCATCCTCCCTGTGATCAGGGTAATAGTGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAATCGAGGGACTGGGTTTGATCGTTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCACCCTTCCACTGGAGGATTTCTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATCGGCTACGGTGTTCCCATCTTGGCATGGCCCATCAGAGGAGATCAGCACTACAATGCCAAATTGCTCGTCAAGGACCTCCAGATTGCGGCCATGATCGACAAGCCAACACAGAATGGGCTTGTGAGCAGGAAGGAAATTGGACATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAGCCCAGTTAAGAGAAAGAGCAGACTCTCTGAAACTCAAGTTCCGCACTACCTGTCTCTTATCCTCCCAAGCCGTGTTAGACACTTTTCTTGATTACCTTTTACCGAAGCAGTCCGAAACTGTTGGAATGAATGTCAGCTTGAAAGTACAGGATCTGGGCGAATAATGAAATGGGATAAGGGGGCCATTAATCCAGCTTTTACTAAAAATGTTATCCGATGCTTTTTATTAATGCAAAGGTTTTGTGTTGTGGGGTGTGCATCTTACTGTCTTATGTTTCACGGGATCCGGCATTGACATGATACTGTTATGAACTATAACCACAAATTGGTTTATTTGAAGACGATAATACTTCCATCATGCTTTTTAGGATAGAATATAATCATTCAATCTGGCAAAAATTGGGACTTCTAAAATGCTGCAAATGTGGCAACA

Ace file of the UniGene sp_v3.0_unigene167

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase 73B4 [Arabidopsis thaliana] sp\|Q7Y232.1\|U73B4_ARATH RecName: Full=UDP-glycosyltransferase 73B4; AltName: Full=Flavonol 3-O-glucosyltransferase UGT73B4 gb\|AAP37678.1\| At2g15490 [Arabidopsis thaliana] dbj\|BAE99671.1\| putative glucosy	-	-	0.0	40%
FL-Next	sp=UDP-glycosyltransferase 73B4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Sma3	Chromosome chr2 scaffold_97, whole genome shotgun sequence	-	-	5.035e-10	-

Source	Gene names
Sma3	GSVIVT00002450001; GSVIVT00036631001; GSVIVT00038723001; GSVIVT00038735001; GSVIVT00038744001; POPTRDRAFT_646335; POPTRDRAFT_816627; VITISV_004870; VITISV_017571; VITISV_034975;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tobamoviral movement protein	IPR001022	-	0.0	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7Y232

Fln msg: your sequence is longer than subject: 553 - 484

Fln protein: MAEGGAEIVAIPFNGQGHVFPCIELCKRLAARGLHITIIADSSVSATLRTVADQSSSSGLRITFIELESEEEEEEELGDSAPHPDHHGHDHMEQQQQKAMEEILQKKLSTPPLCIIGDVMMGWVPELCKNLGIPRVSFFTSGACSLAFEYAIWKHRSSLDQLQHDGKQAAFLVPGFPPSMSITPSDLQHIAPPFPPGGGGPPPPPGRGHPPPPAGGPQGSKPKFPPGRRPPPRPPGSKSHSPPWMNGIKDCVGILVNTCEELESPFIEYIGKEIEIPIWAAGPFLPASSFLDQSGSGTTVTHDGAIRGKKSSIDEEQCLKWLNSKAPASVLFVSFGSEVGPSVEETRELALGLEAAQKPFIWVLQDHHDRPPPPDHPPCDQGNSEGEGAEDMLPEGFEDRIEGLGLIVRGWAPQLLILSHPSTGGFLSHCGWNSTVESIGYGVPILAWPIRGDQHYNAKLLVKDLQIAAMIDKPTQNGLVSRKEIGHGVKLLMESEHGAQLRERADSLKLKFRTTCLLSSQAVLDTFLDYLLPKQSETVGMNVSLKVQDLGE*

Protein Length: 554

Fln nts: GACCTTAAGCCATCATGGATCAATCAGTCCATCAGAATATATATGTATGGATGTAAGGTAAAAACGATTATCGATCTACAAAAAT_-_ATGGCGGAAGGAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGGCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAACTGGAATCCGAGGAGGAGGAGGAGGAGGAATTGGGGGATTCAGCACCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGCTCTCAACTCCACCTCTCTGCATCATCGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAATTTGGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCCCTTGATCAACTTCAACATGATGGCAAGCAGGCCGCCTTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCTATTACTCCCTCCGATTTGCAGCATATCGCTCCTCCCTTTCCTCCCGGAGGTGGAGGGCCTCCTCCGCCGCCTGGACGAGGGCATCCACCTCCTCCTGCAGGTGGGCCTCAAGGTTCCAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCGTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATGGCGCAATCCGCGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGAAATGGTTGAATTCCAAGGCGCCTGCATCTGTTCTCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCTTGGACTGGAAGCTGCGCAGAAGCCATTCATTTGGGTCTTACAGGATCACCATGATCGTCCTCCCCCTCCTGATCATCCTCCCTGTGATCAGGGTAATAGTGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAATCGAGGGACTGGGTTTGATCGTTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCACCCTTCCACTGGAGGATTTCTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATCGGCTACGGTGTTCCCATCTTGGCATGGCCCATCAGAGGAGATCAGCACTACAATGCCAAATTGCTCGTCAAGGACCTCCAGATTGCGGCCATGATCGACAAGCCAACACAGAATGGGCTTGTGAGCAGGAAGGAAATTGGACATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAGCCCAGTTAAGAGAAAGAGCAGACTCTCTGAAACTCAAGTTCCGCACTACCTGTCTCTTATCCTCCCAAGCCGTGTTAGACACTTTTCTTGATTACCTTTTACCGAAGCAGTCCGAAACTGTTGGAATGAATGTCAGCTTGAAAGTACAGGATCTGGGCGAATAA___TGAAATGGGATAAGGGGGCCATTAATCCAGCTTTTACTAAAAATGTTATCCGATGCTTTTTATTAATGCAAAGGTTTTGTGTTGTGGGGTGTGCATCTTACTGTCTTATGTTTCACGGGATCCGGCATTGACATGATACTGTTATGAACTATAACCACAAATTGGTTTATTTGAAGACGATAATACTTCCATCATGCTTTTTAGGATAGAATATAATCATTCAATCTGGCAAAAATTGGGACTTCTAAAATGCTGCAAATGTGGCAACA

Fln Alignment:

Contig167___GILVNTCEELESPFIEYIGKEIEIPIWAAGPFLPASSFLDQSGSGTTVTHDGAIRGKKSSIDEEQCLKWLNSKAPASVLFVSFGSEVGPSVEETRELALGLEAAQKPFIWVLQXXXXXXXXXXXXXCDQGNSEGEGA-EDMLPEGFEDRIEGLGLIVRGWAPQLLILSHPSTGGFLSHCGWNSTVESIGYGVPILAWPIRGDQHYNAKLLVKDLQIAAMI---DKPTQNGLVSRKEIGHGVKLLMESEHGAQLRERADSL
Q7Y232_____________GVLVNSFYELESSYADFYRSFVAKKAWHIGP-------LSLSNRGIA---EKAGRGKKANIDEQECLKWLDSKTPGSVVYLSFGSGTGLPNEQLLEIAFGLEGSGQNFIWVVSKNE--------------NQVGTGENEDWLPKGFEERNKGKGLIIRGWAPQVLILDHKAIGGFVTHCGWNSTLEGIAAGLPMVTWPMGAEQFYNEKLLTKVLRIGVNVGATELVKKGKLISRAQVEKAVREVIGGEKAEERRLRAKEL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
954		33		66	1.0
972	25		75		1.0
988	87		12		0.992554
990	62		37		1.0
1045	71		28		1.0
1058		71		28	1.0
1078	22	77			0.999999
1101	87		12		0.992554
1151		85	14		0.993533
1353		12		87	0.992554
1411		14		85	0.993533
1435		87	12		0.992554
1562		14		85	0.993533
1607	83	16			0.994512
1630	83			16	0.994512
1639		83		16	0.994512
1654	16		83		0.994512
1678		20		80	0.995493
1757		11	88		0.999952
1767		29	64		1.0
1771	11			88	0.999952
1833	10		90		0.90298
1865		75	25		0.996473
1867		25	75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
293	312	GAG GAG GAG GAG GAG GAG GA	20
363	376	AGC AGC AGC AGC AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain