SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166

Length: 2232 nt

UniGene Fasta

>sp_v3.0_unigene166
CTCTGTTTTGATGGTCAAGAAACACCGCAAAGATTTGGAGGCGACAGCAATCCGCAGAGGCATCCGCACGAATCTCTGCAAAATAAATGCTTAATCTTTCAAATCTAAACCAGGAATCCATCAAACGTTCTTCTATAAGACTAACTGGAGCTCCATTAATACTCACATCTCTGCTGTTATTTTCTTCTATAAATGATTTGTTTGTGTTAGTTGGACTCTGGTCAGGTTGGATTCTCAAGGCATTTCACGATCTACAGGCGTTTTATTTAAGAGTTCAGAAGTGAGACTTCTCGGCAGTTTCAATCTAGCTCTGCGAAAAATCAAATGGCTTCGTCGGTTGAGCTACGCTCGAGTCCCTGAAAGTTTATGGGTGGGAGTTTTTCCTTACTGGTTCAGATTTGATTTTCAGCGGATGTTCTTGGGAATTTTTCGTTACTGGATCAGATTTGATTTTCAGCGAATGGTGTCCTGGACATCTTATTTGGGAGTTCTTGGAATGAAATGTTTAATGAGGGTAAAACATTTACTCCAAATCTTGAAGCCAGACCCCAATAACTCCCAATAAATTCCAGTAGTGGAATAGGAGTTTTATTTAAAAGAAAATTCAAATGCATTCAGTTCTGCACAAAACAAAGCACTTAAATGTCGTGGCTCTGATAATCGTTCCCATCATTCTCTTCATTATCCTATGCTGTTGCCCTCTCTGCTGCTGCTTCTGGGCAGCCTTACATTTCCTGTCAATAAGAGAGAAAACATTACGGGAGCGAAGAACCAACTTTGCGGGGCAATGGAGAGAACAGAATCCTATAATTCCCTTTGACAGTTCAAAGGAATGGATCAGTGCAGACAAGGGCTGGGAAGCCTGGCATTTCGAATTCCATAGACTTCCCAATGAATTCAATGGACTCAGCACAGAAACCTTCCAGTCCCCAGAGCCTTTCATTGCATTAAATTCGTGTGATCTGCAGGAAATCAATTTCAATCCCTTGATTGGCTCCAAGAGAAAACCACAGTCAGTTCAGTGCATTCTTCCTCTGATGCATGGGAATGAGAGTACGGGCTTTAGGGTTGCTTGTAACTATTTTGAGGTCTCCATAGTTGCCTACAGACCCAATGCGAAGAAGAAGACGAAGAGTGCTGGGATTGTTGATGGCAATTTGGCTATTGGGTTGGCTTGCAGGCCGGCCCCTCCTTTCAGATTTCCTGGTCTAGATGATGTTTCGATTGGATTTCATTCCAAGAAGGGGGAGATCTTCATTGCAGGTGCAGGAGAAGTATGTTTCTTTGGCAATCCCTGGAATAGAATCGGAGCCACCGTCGGTTGTGGATATGATATTAAACGAGGACTTTGTTACTTTACTCAAAACAATAGTCCTCCTATGTTCACTACATTTGGAGTTGCAAATTGTATTGAGAACAATATGTTCCCAACCATTGGAGCTGACTGCGATGTGACTGTGGTTGTCAATATGGGTCAGAATAGCTTTCAATGCATGCCTGTTATGATTGCAAATCAACTCTCATTCTACAACCCAGGAAATGCAAAAACATGCAAAAGGGATTCTACAGAGACATGTACTAAGGATTCTATCCCTGCAATTACAGTGGTTGTTGATGCTAATGATCCTCTGAATACCATAAAGCCAGAGGATGAAAGCTGTTCTCTATCAATCGTGGACAAACATGTACAGACATACTCTTCTCGCAATATAGAGAGAGAAGTACAGACAACTTTTATAGACGAAGAGACCCTGCAATCTCATATTTATCCTCTTATTGAAGACCGAAGATTCAGTGAAGAGCAAAAATATACTATGGTCTCTCCATTCGATGAACCAGTGAATGGATGTCAAATACCTGATATTGTTTCTTCATGCAATATGGTAATCCATGACAAATATGTATTTCCATCTGCTGAATGCAATGTTGGAAACTAAATATCTCTAGTGTTAATGTTTCTCCATGCATACACCATGTGGAAAGATGATGTTATTGCTGAATAAAAGTTAAAACTGAAAATATGAGATGGTGATTTCTCACTTCAATAATCAAAGAAGACCTACCAACATCTTCTGTATGCAATAATGAAGGGAATTATATTGACGGCAAACACAAAATTTCTGCACTTTGCATGCAGAAATAGCGGCACCCTATTCTATATTCACAATGGGGCCGAAAGTAAAATGGTTATAACTTATAACTATCTCCTCCTGCTACCATTTTTTATGAAGA

Ace file of the UniGene sp_v3.0_unigene166

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endosomal SPRY domain protein, putative [Neosartorya fischeri NRRL 181] sp\|A1D1S7.1\|SSH4_NEOFI RecName: Full=Protein ssh4 gb\|EAW22370.1\| endosomal SPRY domain protein, putative [Neosartorya fischeri NRRL 181]	-	-	3.0e-05	32%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	38%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A9TK50

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 443 - 482

Fln protein: MHSVLHKTKHLNVVALIIVPIILFIILCCCPLCCCFWAALHFLSIREKTLRERRTNFAGQWREQNPIIPFDSSKEWISADKGWEAWHFEFHRLPNEFNGLSTETFQSPEPFIALNSCDLQEINFNPLIGSKRKPQSVQCILPLMHGNESTGFRVACNYFEVSIVAYRPNAKKKTKSAGIVDGNLAIGLACRPAPPFRFPGLDDVSIGFHSKKGEIFIAGAGEVCFFGNPWNRIGATVGCGYDIKRGLCYFTQNNSPPMFTTFGVANCIENNMFPTIGADCDVTVVVNMGQNSFQCMPVMIANQLSFYNPGNAKTCKRDSTETCTKDSIPAITVVVDANDPLNTIKPEDESCSLSIVDKHVQTYSSRNIEREVQTTFIDEETLQSHIYPLIEDRRFSEEQKYTMVSPFDEPVNGCQIPDIVSSCNMVIHDKYVFPSAECNVGN*

Protein Length: 444

Fln nts: CTCTGTTTTGATGGTCAAGAAACACCGCAAAGATTTGGAGGCGACAGCAATCCGCAGAGGCATCCGCACGAATCTCTGCAAAATAAATGCTTAATCTTTCAAATCTAAACCAGGAATCCATCAAACGTTCTTCTATAAGACTAACTGGAGCTCCATTAATACTCACATCTCTGCTGTTATTTTCTTCTATAAATGATTTGTTTGTGTTAGTTGGACTCTGGTCAGGTTGGATTCTCAAGGCATTTCACGATCTACAGGCGTTTTATTTAAGAGTTCAGAAGTGAGACTTCTCGGCAGTTTCAATCTAGCTCTGCGAAAAATCAAATGGCTTCGTCGGTTGAGCTACGCTCGAGTCCCTGAAAGTTTATGGGTGGGAGTTTTTCCTTACTGGTTCAGATTTGATTTTCAGCGGATGTTCTTGGGAATTTTTCGTTACTGGATCAGATTTGATTTTCAGCGAATGGTGTCCTGGACATCTTATTTGGGAGTTCTTGGAATGAAATGTTTAATGAGGGTAAAACATTTACTCCAAATCTTGAAGCCAGACCCCAATAACTCCCAATAAATTCCAGTAGTGGAATAGGAGTTTTATTTAAAAGAAAATTCAA_-_ATGCATTCAGTTCTGCACAAAACAAAGCACTTAAATGTCGTGGCTCTGATAATCGTTCCCATCATTCTCTTCATTATCCTATGCTGTTGCCCTCTCTGCTGCTGCTTCTGGGCAGCCTTACATTTCCTGTCAATAAGAGAGAAAACATTACGGGAGCGAAGAACCAACTTTGCGGGGCAATGGAGAGAACAGAATCCTATAATTCCCTTTGACAGTTCAAAGGAATGGATCAGTGCAGACAAGGGCTGGGAAGCCTGGCATTTCGAATTCCATAGACTTCCCAATGAATTCAATGGACTCAGCACAGAAACCTTCCAGTCCCCAGAGCCTTTCATTGCATTAAATTCGTGTGATCTGCAGGAAATCAATTTCAATCCCTTGATTGGCTCCAAGAGAAAACCACAGTCAGTTCAGTGCATTCTTCCTCTGATGCATGGGAATGAGAGTACGGGCTTTAGGGTTGCTTGTAACTATTTTGAGGTCTCCATAGTTGCCTACAGACCCAATGCGAAGAAGAAGACGAAGAGTGCTGGGATTGTTGATGGCAATTTGGCTATTGGGTTGGCTTGCAGGCCGGCCCCTCCTTTCAGATTTCCTGGTCTAGATGATGTTTCGATTGGATTTCATTCCAAGAAGGGGGAGATCTTCATTGCAGGTGCAGGAGAAGTATGTTTCTTTGGCAATCCCTGGAATAGAATCGGAGCCACCGTCGGTTGTGGATATGATATTAAACGAGGACTTTGTTACTTTACTCAAAACAATAGTCCTCCTATGTTCACTACATTTGGAGTTGCAAATTGTATTGAGAACAATATGTTCCCAACCATTGGAGCTGACTGCGATGTGACTGTGGTTGTCAATATGGGTCAGAATAGCTTTCAATGCATGCCTGTTATGATTGCAAATCAACTCTCATTCTACAACCCAGGAAATGCAAAAACATGCAAAAGGGATTCTACAGAGACATGTACTAAGGATTCTATCCCTGCAATTACAGTGGTTGTTGATGCTAATGATCCTCTGAATACCATAAAGCCAGAGGATGAAAGCTGTTCTCTATCAATCGTGGACAAACATGTACAGACATACTCTTCTCGCAATATAGAGAGAGAAGTACAGACAACTTTTATAGACGAAGAGACCCTGCAATCTCATATTTATCCTCTTATTGAAGACCGAAGATTCAGTGAAGAGCAAAAATATACTATGGTCTCTCCATTCGATGAACCAGTGAATGGATGTCAAATACCTGATATTGTTTCTTCATGCAATATGGTAATCCATGACAAATATGTATTTCCATCTGCTGAATGCAATGTTGGAAACTAAATATCTCTAGTGTTAATGTTTCTCCATGCATACACCATGTGGAAAGATGATGTTATTGCTGAATAAAAGTTAAAACTGAAAATATGAGATGGTGATTTCTCACTTCAATAATCAAAGAAGACCTACCAACATCTTCTGTATGCAATAATGAAGGGAATTATATTGACGGCAAACACAAAATTTCTGCACTTTGCATGCAGAAATAGCGGCACCCTATTCTATATTCACAATGGGGCCGAAAGTAAAATGGTTATAACTTATAACTATCTCCTCCTGCTACCATTTTTTATGAAGA

Fln Alignment:

Contig166___DGNLAIGLACRPAPPFRFPGLDDVSIGFHSKKGEIFIAGAGE------VCFFGNPWNRIGATVGCGYDIKRGLCYFTQNNSPPMFTTFGVANCIENNMFPTIGADCDVTVVVNMGQNSFQCMPVMI
A9TK50_____________DELLSVGLAGAEAPPFRLLGFDPGSVGFLSADGQCYVNGMPHLQGKDLVPTKGRPWGTVKTTVGCGFDPRVKRVYFTINGELVHEALLKSAD-FSNPLYPTIASNYDVTVLINLGQKSFEYAPANI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1307		75		25	0.996473
1323	16			83	0.994512
1324	16		83		0.994512
1327			83	16	0.994512
1334		16		83	0.994512
1386	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain