SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165

Length: 1995 nt

UniGene Fasta

>sp_v3.0_unigene165
ACACCAAAACCAGTGTTGGTTGATCTCCACTCATGAATTATTGATTTCAGTTCTTCATTGCAGTTCTCTGAATATTTCAATCTTTACTCAGCAGATGGAGACCTGATACTGTGCAAGAAGTCCATTGGGTTGAATAATAGGGAATGCAAATTGAAGGATCCGAAGATATAGAATGAGCGGGGAAAGCGTAATAGATTATCAGATTTCAGCAATGGAGTTGGAGTCCGGTTCAATTGAAGTTCATGGCGGGAATAGGACATTGGTTGTGGGGAAGGAAATTCTGTTTAGTCCTCTCATAACGGATGAAGATGGCCAGCCACAGCGCACTGGTACTGTCTGGACTGCATCTTCCCATGTGATAACAGCAGTAATTGGGTCCGGCGTGCTATCGTTGGCATGGAGTATGTCTCAGCTGGGTTGGATAGCAGGGCCACTGGTTCTGTTGGGCTTTTCCTTGGTCACCTACTACACCTCCATGTTGCTCGCTGATACTTACCGGTCGCCTGATCCTGTTACTGGAAGGCGCAACTATACGTATACAGATGCCGTCACAGCCATTCTAGGTGGGAAAAAGGTCTTTCTATGCGGGATGGTACAGTACCTGAATCTGTTGGGAACAGCTATCGGATATACCATCACTGCTTCCATAAGCATGGTGGCAATAGGGCGATCAGACTGTTTTCACGAAAAAGGGAGGGAATCGCCTTGCCATATATCAAACAATTTGTACATGGCCATTTTTGGAGCAGTCCAAGTGTTGCTCTCACAGATTCCTAATTTCAGCAAAATCTGGTGGTTGTCAACAGTTGCAGCTGTAATGTCTCTTGCATATTCATTCATTGGACTTGGTCTAGGAATTGGCAAGGCCACAGAGAAAGGCCATTCTCATGGTAGCTTAGGAGGAGTGGGGATCGCGGGTTTCCAAAACTCAGTTGATAAAATCTGGACTGTCTTTCAAGCTCTTGGGAATATTGCATTTGCTTATTCCTTTTCAATGATTCTAATTGAGATACAGGACACTGTAAAATCTCCACCAGCAGAGAACAAGACAATGAAGAAGGCATCACTAATTGGCGTTTTGGTGACCACCGTGTTCTACCTATCCGTTGGTTGTGCTGGTTACGCAGCATTTGGAAACCATGCTCCTGGCAATCTCCTAACGGGATTCGGATTCTACAATCCATTCTGGCTTGTGGACATAGCCAACATTTGCATTGTCATTCACTTGGTGGGCGCTTACCAGGTGTTCTGCCAACCTCTGTATGCATTCGTGGAGGAATGGAGCGCTAATACATGGACCAAGAGCTGCTTCATCCAAAACGAATACAAACTGCCTATCCCCGGATTGGGAGAGTTTAAACTCAATATGTTTCGATTAGTGTGGAGGACTTGTTTTGTGGTTTTTACTACAGTGGTGTCGATGGTTCTGCCCTTCTTCAATGCCATCATGGGCGTGCTTGGAGCTATAGCCTTCTTCCCTCTCACCGTTTATTTCCCCATACAGATGCACATAACACAAACTAAGGTCCGGCAATGGAGCTTCAAGTGGGTGACCCTGCAGCTCATGTGTGTATTGTGCTTCTTTGTGACAATGGCAGCACTTGTGGGTTCTATAGCTGGTGTTGTGGAAGTTCTTCAGCATTACACTCCATTTAAAACAAGGTATTGATTGATCACTCATGGCCAATACTTCTGTGTAAACTGTTGGTGCCCATCGCCAAACCCGAGGGCCACAAGAATTTCTGCTGGGAAACAATAAGTTGCAATTTATGTAGTACTTTCAAACACAAGTTCAATAAAAACTATGGAGCTACAATGAACATTTCACTTTCAAGGAAAATGAAAAAGAACGGTGATAATTATATTGATAAATCCATAGATGAATGGTGATTGGGATTGGTAATTACAGGATATCATTTGAGAGAGGACCAAAGGTGTCTCCTTTATTCTGTATAAATACTTTTTATTATAAATTTCATCATGCATAATATTCTT

Ace file of the UniGene sp_v3.0_unigene165

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4M6_POPTR	-	-	64%
FL-Next	sp=Amino acid permease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Sma3	Amino acid permease	-	-	-

Source	Gene names
Sma3	24K23.18; AAP; AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; AAPB; AAPC; AT5G23810; At1g10010; At1g44100; At1g58360; At1g77380; At5g09220; At5g23810; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F19C14.3; F2P24.9; GSVIVT00008237001; GSVIVT00012093001; GSVI

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77380.1	AAP3, ATAAP3 amino acid permease 3 chr1:29075201-29077252 REVERSE LENGTH=476	61%
RefSeq	Arabidopsis thaliana	NP_177862.1	amino acid permease 3 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002307053.1	amino acid permease, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q39134

Fln msg:

Fln protein: MSGESVIDYQISAMELESGSIEVHGGNRTLVVGKEILFSPLITDEDGQPQRTGTVWTASSHVITAVIGSGVLSLAWSMSQLGWIAGPLVLLGFSLVTYYTSMLLADTYRSPDPVTGRRNYTYTDAVTAILGGKKVFLCGMVQYLNLLGTAIGYTITASISMVAIGRSDCFHEKGRESPCHISNNLYMAIFGAVQVLLSQIPNFSKIWWLSTVAAVMSLAYSFIGLGLGIGKATEKGHSHGSLGGVGIAGFQNSVDKIWTVFQALGNIAFAYSFSMILIEIQDTVKSPPAENKTMKKASLIGVLVTTVFYLSVGCAGYAAFGNHAPGNLLTGFGFYNPFWLVDIANICIVIHLVGAYQVFCQPLYAFVEEWSANTWTKSCFIQNEYKLPIPGLGEFKLNMFRLVWRTCFVVFTTVVSMVLPFFNAIMGVLGAIAFFPLTVYFPIQMHITQTKVRQWSFKWVTLQLMCVLCFFVTMAALVGSIAGVVEVLQHYTPFKTRY*

Protein Length: 500

Fln nts: ACACCAAAACCAGTGTTGGTTGATCTCCACTCATGAATTATTGATTTCAGTTCTTCATTGCAGTTCTCTGAATATTTCAATCTTTACTCAGCAGATGGAGACCTGATACTGTGCAAGAAGTCCATTGGGTTGAATAATAGGGAATGCAAATTGAAGGATCCGAAGATATAGA_-_ATGAGCGGGGAAAGCGTAATAGATTATCAGATTTCAGCAATGGAGTTGGAGTCCGGTTCAATTGAAGTTCATGGCGGGAATAGGACATTGGTTGTGGGGAAGGAAATTCTGTTTAGTCCTCTCATAACGGATGAAGATGGCCAGCCACAGCGCACTGGTACTGTCTGGACTGCATCTTCCCATGTGATAACAGCAGTAATTGGGTCCGGCGTGCTATCGTTGGCATGGAGTATGTCTCAGCTGGGTTGGATAGCAGGGCCACTGGTTCTGTTGGGCTTTTCCTTGGTCACCTACTACACCTCCATGTTGCTCGCTGATACTTACCGGTCGCCTGATCCTGTTACTGGAAGGCGCAACTATACGTATACAGATGCCGTCACAGCCATTCTAGGTGGGAAAAAGGTCTTTCTATGCGGGATGGTACAGTACCTGAATCTGTTGGGAACAGCTATCGGATATACCATCACTGCTTCCATAAGCATGGTGGCAATAGGGCGATCAGACTGTTTTCACGAAAAAGGGAGGGAATCGCCTTGCCATATATCAAACAATTTGTACATGGCCATTTTTGGAGCAGTCCAAGTGTTGCTCTCACAGATTCCTAATTTCAGCAAAATCTGGTGGTTGTCAACAGTTGCAGCTGTAATGTCTCTTGCATATTCATTCATTGGACTTGGTCTAGGAATTGGCAAGGCCACAGAGAAAGGCCATTCTCATGGTAGCTTAGGAGGAGTGGGGATCGCGGGTTTCCAAAACTCAGTTGATAAAATCTGGACTGTCTTTCAAGCTCTTGGGAATATTGCATTTGCTTATTCCTTTTCAATGATTCTAATTGAGATACAGGACACTGTAAAATCTCCACCAGCAGAGAACAAGACAATGAAGAAGGCATCACTAATTGGCGTTTTGGTGACCACCGTGTTCTACCTATCCGTTGGTTGTGCTGGTTACGCAGCATTTGGAAACCATGCTCCTGGCAATCTCCTAACGGGATTCGGATTCTACAATCCATTCTGGCTTGTGGACATAGCCAACATTTGCATTGTCATTCACTTGGTGGGCGCTTACCAGGTGTTCTGCCAACCTCTGTATGCATTCGTGGAGGAATGGAGCGCTAATACATGGACCAAGAGCTGCTTCATCCAAAACGAATACAAACTGCCTATCCCCGGATTGGGAGAGTTTAAACTCAATATGTTTCGATTAGTGTGGAGGACTTGTTTTGTGGTTTTTACTACAGTGGTGTCGATGGTTCTGCCCTTCTTCAATGCCATCATGGGCGTGCTTGGAGCTATAGCCTTCTTCCCTCTCACCGTTTATTTCCCCATACAGATGCACATAACACAAACTAAGGTCCGGCAATGGAGCTTCAAGTGGGTGACCCTGCAGCTCATGTGTGTATTGTGCTTCTTTGTGACAATGGCAGCACTTGTGGGTTCTATAGCTGGTGTTGTGGAAGTTCTTCAGCATTACACTCCATTTAAAACAAGGTATTGA___TTGATCACTCATGGCCAATACTTCTGTGTAAACTGTTGGTGCCCATCGCCAAACCCGAGGGCCACAAGAATTTCTGCTGGGAAACAATAAGTTGCAATTTATGTAGTACTTTCAAACACAAGTTCAATAAAAACTATGGAGCTACAATGAACATTTCACTTTCAAGGAAAATGAAAAAGAACGGTGATAATTATATTGATAAATCCATAGATGAATGGTGATTGGGATTGGTAATTACAGGATATCATTTGAGAGAGGACCAAAGGTGTCTCCTTTATTCTGTATAAATACTTTTTATTATAAATTTCATCATGCATAATATTCTT

Fln Alignment:

Contig165___DEDGQPQRTGTVWTASSHVITAVIGSGVLSLAWSMSQLGWIAGPLVLLGFSLVTYYTSMLLADTYRSPDPVTGRRNYTYTDAVTAILGGKKVFLCGMVQYLNLLGTAIGYTITASISMVAIGRSDCFHEKGRESPCHISNNLYMAIFGAVQVLLSQIPNFSKIWWLSTVAAVMSLAYSFIGLGLGIGKATEKGHSHGSLGGVGIAGFQNSVDKIWTVFQALGNIAFAYSFSMILIEIQDTVKSPPAENKTMKKASLIGVLVTTVFYLSVGCAGYAAFGNHAPGNLLTGFGFYNPFWLVDIANICIVIHLVGAYQVFCQPLYAFVEEWSANTWTKSCFIQNEYKLPIPGLGEFKLNMFRLVWRTCFVVFTTVVSMVLPFFNAIMGVLGAIAFFPLTVYFPIQMHITQTKVRQWSFKWVTLQLMCVLCFFVTMAALVGSIAGVVEVLQHYTPFKTRY
Q39134_____________DDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISI-GAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1810	12		87		0.992554
1813	87			12	0.992554
1815	87		12		0.992554
1816	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain