SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122

Length: 1216 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene122 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone deacetylase, putative [Arabidopsis thaliana]	-	-	2.0e-08	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL4

Fln msg: Distance to subject end: 386 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 170 - 648

Fln protein: MLIQLVVERMAGKAVKRSLLLKIWGHVSIENIREQGRNRKSSEQLLALYEQEGLLEDDEDDDDVDWEPFEGVTVQMKWYCTNCTMVNSDDSVHCDSCGEHRNSDILRQGFLASPYLPAESPSSSDVPDERLEESKCVMTTLTPSISPMIGVLCSSLQSERRTVVGFDERM

Protein Length: 171

Fln nts: ATGGGGAGCTGCCTCCTCGCTCTCCAAAATTCGGGGCGTGCAGATCGTTTACGCGCTTAAACTCCATTTCTTACTCACGAGTTTACCCAAGCCTCTCTGTGCAAGCACGAATTTGCATTTATTTCTCCATTACGTGACAGAGAGGGTTAGGTGATTAATTAACTATCGGAGGATTAATTGAAATTCTAATTATCAGCTCGCTCCCTCCGTTTTTCTCTTCCCCCTTTCAGTCTCGTATGGATTAGCCACTTCGCTTGTAATAACAATGGCGGAATCATCATCATAATCACGCGGGCGGCGAGGTGGGTTTAGGGTATAAGGTTAAACAGAGCATCCAACGACCTACCTGGACTGGTTCATGTGCTAAGATTTTTATTGTAGTATTTTTGTTGCACATAGTGGGCATTGGGGTATTTATCCAAAGCCATATTGAAAAAATAAGACTTGTATCGTATGAAAAAATAAATATTCATGGCAGATGTACCAGAGTCTCTGCAACAAGAAAAGGATGAACAGGGAACTGATAAAAAATGCTGTGATGGCAAATTTCAGAAAGAGATGGACATTGATGACATGGAAGAGGAATATTCTGAAAGCAGCATAAATGATGAGGAAGAAAATTTATCTGATAATGTAGCTATCAATAATATGGGTACTATTCCTCAAGGGCAAGCATGCATGGCTGTTACAGTTGAAGCCATTGAGC_-_ATGCTAATTCAGTTGGTTGTGGAAAGAATGGCAGGGAAGGCAGTGAAGAGGTCACTGCTGCTGAAGATATGGGGACATGTATCCATAGAAAATATAAGAGAACAAGGTCGTAATAGGAAAAGTTCGGAGCAATTGCTTGCTTTGTATGAACAAGAAGGGCTGTTGGAAGATGATGAAGATGACGACGATGTGGACTGGGAGCCTTTTGAAGGTGTCACTGTGCAGATGAAATGGTATTGCACCAATTGCACAATGGTCAATTCCGATGATTCAGTCCACTGTGATTCATGTGGTGAACATCGCAATTCAGACATTCTCAGGCAGGGATTCTTAGCATCACCCTATCTACCTGCAGAAAGCCCAAGCAGTTCAGATGTTCCAGACGAGAGGCTAGAAGAAAGCAAATGTGTTATGACCACTCTCACACCTTCCATATCTCCCATGATTGGGGTGTTGTGTTCATCATTACAGTCAGAGAGACGAACAGTGGTTGGGTTTGATGAGCGTATG

Fln Alignment:

Contig122___VQMKWYCTNCTMVNSDDSVHCDSCGEHRNSDILRQGFLASPYLPAESPSSSDVPDERLEESKCVMTTLTPSISPMIGVLCSSLQSERRTVVGFDERM
B8LKL4_____________VRKKWFCINCTMPNLDEALHCDLCGEYRESGILNEGYLSPQFAPAEVSSSSQLSLEMPENGNEVATYITPTPTSTTGESSTLSLSERRTVIGFDPRM

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1117	75		25		0.996473
1186	75	25			0.996473
1187	75	25			0.996473
1188		25		75	0.996473
1189	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain