SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120

Length: 2993 nt

UniGene Fasta

>sp_v3.0_unigene120
GCGGTTTCAAACACAGGCTATAGACATTCTGATTACTAGAATCAGTATTTCTCTCATGCTGCAGGGTACTATTCATTACTTCTTTTGCAGGGTACTATTCATTACTTCTTTTGTGTACAGGGTTTCAATGTCTCCTTACACAGGGTATAATGGATAATGCAAACCTCCCTGTTTATCTCATGCTGTAGAGATTACCTTCTCGATACCTTTCCCTTCGCAGACAGTAGTGATGGCTTCCCTGGAGTTTCGATTCCCTCTTCACACAGTTGCCCAACAGGCATAGCCATGCCCTGAGATGTTAAATTTAGATTTTAGCTCAATTTCCCATGTCTAATCTGAGTTAAATTTACTGTGATGCGGAGGGTTCCTCCCAGGTTGCCTGAATCCATCACGCAGATGACTTCCCTGCTGAATCCGAAGACCCTACAGGAAATTTTTTGATCTAATGTGGAGTGTAAACCCTGGGTGTCAGGTCGTCTGCTGTGTAGGCAAATTTTAGCCACAAGAACCGGGTCGCCTGAGGAATAACCTGGCAATCTGGTCTCCTATGTCTTTCACCATTTCAGGAAACTTTTTTGAGCTAGCTGCGAAACTACTTGGAAAGTCTATATGGCAGGCCGTGATAGATTTGACTTCTATAGGAAGAACAGAGATTATTCAAATATTTTAGATGAAGATGTTGAACCAGAAGAAATGGAAGAGGGAGAAGAGGAAGAAGAGTATGAAGAGGAGGATGATCAGGAGGAAGGACAGTATGAGAAGTCAGAACCAGAAGAAGATCCTGTTGCGGTCAGGGAACGCCAGGAGTATTTACAGAGGAGAGAAAAATTAAAAGAAGTTGAGCGGCAGAAATTGAGGCAGAAACTGAAGCAAAAGCTTTCTGATCAATTTTATTTGGAAAATGATCAAAAGAAAAAGCTCTCAAACAATGATGAGGACTATGGTTCTTTCTTTGGCCCTTCTGAAATAGTGGTTGCCAGAAGAGTTATTGTGGAAACACGTGCAAGGAAAGAAGCTAATTGTATTGCAGCTAAGGATATATCTGAACCTGAATCGGATACAAACTTTGAAGAAAAAGAACCACATCCACGCAAGGTTGTTGATGAGACCAAGACAAAAGCACAGCAATTAAAAGCAACCAGGGACTATTCCTTCCTCTTTTCTGATAATGCTGAAATTCCTGTTCCTGATAAAGGGTCCACATCTAATCTTAATTCTGTTACAAAATCCATACCGGATAATGCTCAGAAAAAACAACCAATTGGGAAAAATTCAGTTGGGGCATTAAAGAAACCTGTAGTATCCAGTAAGCCAGTCTCCTCTTCCAAAGAATTTAAAGGCATTGTAAAACCTTCTGGACAAATGTCTATCAAGCCTGGTTCACGAACAATATCTCCGCAACCCAATCTGAAAGGATCATCTAATGCAAAGAATCAGGCAGGCAAGCCGGGATCTGGCTCAGGGCGTTCTGTTATTCAGACCAATGGTTCCTTGTGTCAACCTGGGAGGAACGGAACAAAGACTGTAAATTCAGGGAGTAATGGTGTGAAGGGTGTAAACTCAGATACTATTAAGAAAAAGGAACCTTTATTAAATGCTAGTAAAAGTGGGAAGGATCAACAGCGGTTATCAGGCTCTCAGCCTACAAATATGCAGAAGACTGTTCCTATAAAGGCTCCATCGCAAACATTCCAAGTGGAGCAAAGAAAGCCTACAGTAATGGCGAAGTCATTGTCCAAACCAGTGCAAAAGATGGAGACAAAACTTCCACCCAAACCAACACCAAAACCAGCACCAAGACCGGCACCGAAACTACTGCCAAAGTCTCAGGTAAAGCCTGCAAAAGCCCCCTTGTCTCGTGAATCGCATTATGATCGACCCAAGAAGAGGAGGCCTGTAGATGATGATTATGATCTTGAAGATGGTGGCAATGTTAGTAGCATGATCAGACAGATGTTTGGGTATAATCCAAATAAGTATAGTGATATGGATGATGAAGATGACCGTGACATGGAGGTTGGATTTAGTAGAATACTAGCTGAAGAGAGAAGAAGTGAAAGAATTGCTAGGGAGGAAGATGAAAGGGAGTTGGCATTAATTGAGGCAGAAGAAAGGGCAGAGAGGGAGAGAGCACTGAAGAGACGAAAATTGCAGAAAAAATAGTCGTGGAGTAACAGAAAATGAATACGACTATTTTCTGTGGCCTAAAAATTTCTGGGCAGATTTGAAACAGGTCAGGGATTCTTTTACAGAAGACATGAATCTGGGAAGGATGTCTGTTCTTTCTGTGAAGCATTAGAGAGTCGATTCGATGAAAAGCAGATTCCATACATACGGATACCTGTCTATGGTCCTTGCATGAGAGATTATTAAGATTGCTGGGCCATCTGTCTTGATATTGGTGGTAACCCTATGGGTTCACTTGTATAATCTTTTTGTATGGAAGGGAAACAGACGTCATCGGGTACTGTGGTTGCAGAATTATGGATGGGGGATTGTATGTTTGCTATTGCTTTGTTTTTTCATTGTAAACCAGTCATTGGTCTGGTTGATTTAGTTCCCACAGCAAACACTACCTTAATATTTCAAGGTCGAGACAATTCTTAATGCAGTTTTGAGGCAATACTACATTCTAAACGTATGTCGTTGATCAGAGCTGGCTATTGAGCACTTGACATTGCATTTGGAGTGTAATTGCAACTCCAATGTGCAGGACCTGGTGATTTGTAAATTCCAAAGAACATATAACTTCTGTTTATGTGCATTGAACTACAGGTCCAATATATGAATTGTACAGGAAATGTGTCTGAAGACAACGTTTCTATTTTATGGAGAAAATCTCAAATGTACACCAGGGCCATTGTTTTCTTTGCCAGCATCATTTTATATTTTAGTCTGTTTCTTTAATTAAAACAGACTTTGCAAAGAGATGTCGAATTAACCACAATTTTCGGATAAATAGGAAATTCTGAAAGCTATTTTTAACATGGAAA

Ace file of the UniGene sp_v3.0_unigene120

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPT2 chromatin protein [Arabidopsis thaliana] gb\|AEC07343.1\| SPT2 chromatin protein [Arabidopsis thaliana]	-	-	6.0e-20	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chromatin SPT2	IPR013256	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKW7

Fln msg:

Fln protein: MAGRDRFDFYRKNRDYSNILDEDVEPEEMEEGEEEEEYEEEDDQEEGQYEKSEPEEDPVAVRERQEYLQRREKLKEVERQKLRQKLKQKLSDQFYLENDQKKKLSNNDEDYGSFFGPSEIVVARRVIVETRARKEANCIAAKDISEPESDTNFEEKEPHPRKVVDETKTKAQQLKATRDYSFLFSDNAEIPVPDKGSTSNLNSVTKSIPDNAQKKQPIGKNSVGALKKPVVSSKPVSSSKEFKGIVKPSGQMSIKPGSRTISPQPNLKGSSNAKNQAGKPGSGSGRSVIQTNGSLCQPGRNGTKTVNSGSNGVKGVNSDTIKKKEPLLNASKSGKDQQRLSGSQPTNMQKTVPIKAPSQTFQVEQRKPTVMAKSLSKPVQKMETKLPPKPTPKPAPRPAPKLLPKSQVKPAKAPLSRESHYDRPKKRRPVDDDYDLEDGGNVSSMIRQMFGYNPNKYSDMDDEDDRDMEVGFSRILAEERRSERIAREEDERELALIEAEERAERERALKRRKLQKK*

Protein Length: 519

Fln nts: GCGGTTTCAAACACAGGCTATAGACATTCTGATTACTAGAATCAGTATTTCTCTCATGCTGCAGGGTACTATTCATTACTTCTTTTGCAGGGTACTATTCATTACTTCTTTTGTGTACAGGGTTTCAATGTCTCCTTACACAGGGTATAATGGATAATGCAAACCTCCCTGTTTATCTCATGCTGTAGAGATTACCTTCTCGATACCTTTCCCTTCGCAGACAGTAGTGATGGCTTCCCTGGAGTTTCGATTCCCTCTTCACACAGTTGCCCAACAGGCATAGCCATGCCCTGAGATGTTAAATTTAGATTTTAGCTCAATTTCCCATGTCTAATCTGAGTTAAATTTACTGTGATGCGGAGGGTTCCTCCCAGGTTGCCTGAATCCATCACGCAGATGACTTCCCTGCTGAATCCGAAGACCCTACAGGAAATTTTTTGATCTAATGTGGAGTGTAAACCCTGGGTGTCAGGTCGTCTGCTGTGTAGGCAAATTTTAGCCACAAGAACCGGGTCGCCTGAGGAATAACCTGGCAATCTGGTCTCCTATGTCTTTCACCATTTCAGGAAACTTTTTTGAGCTAGCTGCGAAACTACTTGGAAAGTCTAT_-_ATGGCAGGCCGTGATAGATTTGACTTCTATAGGAAGAACAGAGATTATTCAAATATTTTAGATGAAGATGTTGAACCAGAAGAAATGGAAGAGGGAGAAGAGGAAGAAGAGTATGAAGAGGAGGATGATCAGGAGGAAGGACAGTATGAGAAGTCAGAACCAGAAGAAGATCCTGTTGCGGTCAGGGAACGCCAGGAGTATTTACAGAGGAGAGAAAAATTAAAAGAAGTTGAGCGGCAGAAATTGAGGCAGAAACTGAAGCAAAAGCTTTCTGATCAATTTTATTTGGAAAATGATCAAAAGAAAAAGCTCTCAAACAATGATGAGGACTATGGTTCTTTCTTTGGCCCTTCTGAAATAGTGGTTGCCAGAAGAGTTATTGTGGAAACACGTGCAAGGAAAGAAGCTAATTGTATTGCAGCTAAGGATATATCTGAACCTGAATCGGATACAAACTTTGAAGAAAAAGAACCACATCCACGCAAGGTTGTTGATGAGACCAAGACAAAAGCACAGCAATTAAAAGCAACCAGGGACTATTCCTTCCTCTTTTCTGATAATGCTGAAATTCCTGTTCCTGATAAAGGGTCCACATCTAATCTTAATTCTGTTACAAAATCCATACCGGATAATGCTCAGAAAAAACAACCAATTGGGAAAAATTCAGTTGGGGCATTAAAGAAACCTGTAGTATCCAGTAAGCCAGTCTCCTCTTCCAAAGAATTTAAAGGCATTGTAAAACCTTCTGGACAAATGTCTATCAAGCCTGGTTCACGAACAATATCTCCGCAACCCAATCTGAAAGGATCATCTAATGCAAAGAATCAGGCAGGCAAGCCGGGATCTGGCTCAGGGCGTTCTGTTATTCAGACCAATGGTTCCTTGTGTCAACCTGGGAGGAACGGAACAAAGACTGTAAATTCAGGGAGTAATGGTGTGAAGGGTGTAAACTCAGATACTATTAAGAAAAAGGAACCTTTATTAAATGCTAGTAAAAGTGGGAAGGATCAACAGCGGTTATCAGGCTCTCAGCCTACAAATATGCAGAAGACTGTTCCTATAAAGGCTCCATCGCAAACATTCCAAGTGGAGCAAAGAAAGCCTACAGTAATGGCGAAGTCATTGTCCAAACCAGTGCAAAAGATGGAGACAAAACTTCCACCCAAACCAACACCAAAACCAGCACCAAGACCGGCACCGAAACTACTGCCAAAGTCTCAGGTAAAGCCTGCAAAAGCCCCCTTGTCTCGTGAATCGCATTATGATCGACCCAAGAAGAGGAGGCCTGTAGATGATGATTATGATCTTGAAGATGGTGGCAATGTTAGTAGCATGATCAGACAGATGTTTGGGTATAATCCAAATAAGTATAGTGATATGGATGATGAAGATGACCGTGACATGGAGGTTGGATTTAGTAGAATACTAGCTGAAGAGAGAAGAAGTGAAAGAATTGCTAGGGAGGAAGATGAAAGGGAGTTGGCATTAATTGAGGCAGAAGAAAGGGCAGAGAGGGAGAGAGCACTGAAGAGACGAAAATTGCAGAAAAAATAG___TCGTGGAGTAACAGAAAATGAATACGACTATTTTCTGTGGCCTAAAAATTTCTGGGCAGATTTGAAACAGGTCAGGGATTCTTTTACAGAAGACATGAATCTGGGAAGGATGTCTGTTCTTTCTGTGAAGCATTAGAGAGTCGATTCGATGAAAAGCAGATTCCATACATACGGATACCTGTCTATGGTCCTTGCATGAGAGATTATTAAGATTGCTGGGCCATCTGTCTTGATATTGGTGGTAACCCTATGGGTTCACTTGTATAATCTTTTTGTATGGAAGGGAAACAGACGTCATCGGGTACTGTGGTTGCAGAATTATGGATGGGGGATTGTATGTTTGCTATTGCTTTGTTTTTTCATTGTAAACCAGTCATTGGTCTGGTTGATTTAGTTCCCACAGCAAACACTACCTTAATATTTCAAGGTCGAGACAATTCTTAATGCAGTTTTGAGGCAATACTACATTCTAAACGTATGTCGTTGATCAGAGCTGGCTATTGAGCACTTGACATTGCATTTGGAGTGTAATTGCAACTCCAATGTGCAGGACCTGGTGATTTGTAAATTCCAAAGAACATATAACTTCTGTTTATGTGCATTGAACTACAGGTCCAATATATGAATTGTACAGGAAATGTGTCTGAAGACAACGTTTCTATTTTATGGAGAAAATCTCAAATGTACACCAGGGCCATTGTTTTCTTTGCCAGCATCATTTTATATTTTAGTCTGTTTCTTTAATTAAAACAGACTTTGCAAAGAGATGTCGAATTAACCACAATTTTCGGATAAATAGGAAATTCTGAAAGCTATTTTTAACATGGAAA

Fln Alignment:

Contig120___MAGRDRFDFYRKNRDYSNILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSEPEEDPVAVRERQEYLQRREKLKEVEXXXXXXXXXXXXSDQFYLENDQKKKLSNNDEDYGSFFGPSEIVVARRVIVETRARKEANCIAAK-------DISEPESDTNFEEKEPHPRKVVDETKTKAQQLKATRDYSFLFSDNAEIPVPDKGSTSNLNSVTKSIPDNAQKKQPIGKNSVGALXXXXXXXXXXXXXXEFKGIVKPSGQMSIKPGSRTISPQPNLKGSSNAKNQAGKPGSGSGRSVIQTNGSLCQPGRNGTKTVNSGSNGVKGVNSDTIKKKEPLLNASKSGKDQQRLSGSQPTNMQKTVPIKAPSQTFQVEQRKPTVMAKSLSKPVQKMEXXXXXXXXXXXXXXXXXXXXXXSQVKPAKAPLSRESHXXXXXXXXXXXXXXXLEDGGNVSSMIRQMFGYNPNKYSXXXXXXXXXXXVGFS
B8LKW7_____________MAGRDRVDFYRNNRDYSNILDEDDEPEEMEEEEEEYEEEDDEEARQYE--KSEPDEDPVVVRERQEYLERREKLKEVERQKLRQKLKQKLSDQTLVEKDNRKKLPY-DDDYGSFFGPSEIVVARRVIVETRARNEASCIAPKVSKEDPKRVSEPESDAKFEVKEPPPRKVVDETKTKAQQLKAIRDYSFLFSDNAEIPVPDKVSTSDPKSVTKSIPGNVQQKQTIGKNSAGALKKPVVSSKPISSSKETKGIVKPSGHLSAKDGSRAISPHPNLNGSSNPKNQVSKLGSGLGRSVIQANGSLRHPGINGTKAVNPGSNGVKGGNLDVVKKKDPLLNVSKVGKDHQRLSGSHPTNMQKTVPIKAPSQTFQVEQRKPPVMVKSSSKPVQKLD--------TKMPPKQAPKPLPKPQVKPAKAPLSRESHYDRPKKRKPLDDDYDDHEDGNVSSIIRRMFRYDPNKYRNMDDEDDRDMEVGFS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1731	66			33	0.997452
1747		66	33		0.997452
1767			33	66	0.997452
1787	66		33		0.997452
1850		66		33	0.997452
1908		20		80	0.995493
1929		80		20	0.995493
1962		33	66		1.0
1965		33		66	1.0
1971	83			16	0.994512
1974		33		66	1.0
2068	50	50			1.0
2136	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain