SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115

Length: 2080 nt

UniGene Fasta

>sp_v3.0_unigene115
ATGGGGGTAACCAATCAAATTTGGCATTGAATCCAAGTGGAAACTCAATTTGGCATGGTCAGGGTATTGTTGGGGCGGCTGATGTGGGTAGAGCCTCTTCACCAGGTCTTACTGTTTCTACGGGTTCAAACCAGGGCATAGCAGGAAGTGGGCTATCTGCTTTCGGAGTTGACGGGTGGAGCTCTGCACTTGCAGATGTTTCTGGTCTGAATGGAGGTAGCAATGGCATGCTTACATCTGCTCAACAAGTGGCATCAGGAACTTCTGTTTTACCTGTTAACTCTGGCCCAGCATCTACAAGTGGACTGAATATGGCCGAGGCATTAGTGCAGAATCCTCCTAGAGTTCGCACTCCTCCTCAGTTATTTATTGAAACTCAAAGGCTAGAGGAGTTGGCCCTGAAGCAATCACGACAACTAATACCTGTGACACCCCCTATGCCAAAAACAACGGGACTTGGCCCATCTGAAAAATTGAAGCCAAAATCACTAAGAGGAATTGATTCTTCTCCATCAACTGGTGGTAAGGTTGGACAGATTGGGTCATCTCAGCTCAATTCTCCACTTCGACAAACTGCCAGACCTGAAACTCCCAAGCAGCCTCAAGTGGGGAAGCTTCTAGTTCTGAAGCCAGTGAGAGAGAAGAATGGAGTTTCTAAATCTGTTAAATCTGATAGTTCCAGTCCGACAAAGGGAGGCAATACCAACAACAGCACTATTGGTGCCCCAACTGCTGGTATTAGTTCAGGTGGAAGTGCGGGTTTGATGATTACCAGGAAGGTGAAACCCTTATCGGATTCGAAAACAGTGCCCGTGTCATCAACATCTCTTTCAACTGGATTTGACTGTGTAACAGGGCAACGATCAAAGGATAACAGCTTAATGATTGAAGAGAAGAAACATCTATCTCAGGCTCAGAATCGAAGTGATTTTTTCAGAGCTTTGAGAAACAAGGCTTCAGGAACAGTTCCAGTCACAAGGATCCAGGATAAGTCAAGTACATCAACAGAGCCCAAAACTCTTGACCAAGAAAGAAATGGTGCCCCATACAGAGAGGGTAAAACAGAAGCAAATGAAAATGGTTCCATCGAGAGTGTGGGTGAGAACTCTGGTATATCTTTAGCTACTGTTGAGATAGCATGCTCTTGGAACAACAATGTGACTGATGCAAATGGTGTTGACCATGGAGAAATTCATGCTGCTGTGGATTCTAGGGAAACTGTCAATCCAACTTCTGTTAACAGCTACTCTGTTATGGGTGGATCTGAAGAGGAGGAGAATGCCTTCCTTCGGTCTCTTGGGTGGGAGGAAAATGCCGGGGGGGAAGAAGCACTAACAGAGGAGGAAATCAATTCATTCTATCAGGAGCAGATGAAATCAAGGGGGGTTGATGCTACATTTTGTCAGGGTAATTACAAACTTCAAAATGTGCCAGTTCAGATGCCTGTTGGAAGCTTGGAGAGTGTGTCATCTGGTATGAGCTCATCTGACTCTGAGCCTGATTCTGATTCCGATTCTTAGCCTTAAGGTGATGGTAACACTATCAATTGTGTAGATTTGTCGGGATTTGTATTCGAAAACAATGCAGGAATATGATGCAACGAATTAGTAGGTTTTAATGTCGACAAGATTTAGAAAAACAGGATTGATTGAGACATTAAAATAGTGGCTCAGTCATCGTAAAGTTGCTAAAGTGTGAATAGAGAATATTTCAGTAGCACAGTTGTTACTTTTATCATCTATAGCTATCATGACAAAAGGGGTTGCTGTTGGAAACAATTTTACAGCGACCAATTCTGTAGGATTCAATTACTTGTGCAAGTGAGCATAATAAGTTTTCGTCCAAGCAGCATGCATTCATGAGTGCAGTCTTATGCTTCAATGACTGCAGCAGACGACTATCTGTGCCCTTTTTGGTAGGTCCATTGTTTTACCTGGCACTTTCTGAAGAGTAAGATGCTTCTGAATTTGTAACAGTGGCTGCTCTTGCCGCAACATTCATTATACGAGTCTCATGATTGAAGCGATGCCATTTTGCAAATAATTGTTCTGCCTTAATAATTGGGATTGGGAATCTTTTA

Ace file of the UniGene sp_v3.0_unigene115

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	37%

Source	Gene names
Sma3	POPTRDRAFT_760865; VITISV_017602;

Source	GOs	Term	Type	e value	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H1R2

Fln msg: your sequence is shorter than subject: 506 - 665

Fln protein: GGNQSNLALNPSGNSIWHGQGIVGAADVGRASSPGLTVSTGSNQGIAGSGLSAFGVDGWSSALADVSGLNGGSNGMLTSAQQVASGTSVLPVNSGPASTSGLNMAEALVQNPPRVRTPPQLFIETQRLEELALKQSRQLIPVTPPMPKTTGLGPSEKLKPKSLRGIDSSPSTGGKVGQIGSSQLNSPLRQTARPETPKQPQVGKLLVLKPVREKNGVSKSVKSDSSSPTKGGNTNNSTIGAPTAGISSGGSAGLMITRKVKPLSDSKTVPVSSTSLSTGFDCVTGQRSKDNSLMIEEKKHLSQAQNRSDFFRALRNKASGTVPVTRIQDKSSTSTEPKTLDQERNGAPYREGKTEANENGSIESVGENSGISLATVEIACSWNNNVTDANGVDHGEIHAAVDSRETVNPTSVNSYSVMGGSEEEENAFLRSLGWEENAGGEEALTEEEINSFYQEQMKSRGVDATFCQGNYKLQNVPVQMPVGSLESVSSGMSSSDSEPDSDSDS*

Protein Length: 507

Fln nts: ATGGGGGTAACCAATCAAATTTGGCATTGAATCCAAGTGGAAACTCAATTTGGCATGGTCAGGGTATTGTTGGGGCGGCTGATGTGGGTAGAGCCTCTTCACCAGGTCTTACTGTTTCTACGGGTTCAAACCAGGGCATAGCAGGAAGTGGGCTATCTGCTTTCGGAGTTGACGGGTGGAGCTCTGCACTTGCAGATGTTTCTGGTCTGAATGGAGGTAGCAATGGCATGCTTACATCTGCTCAACAAGTGGCATCAGGAACTTCTGTTTTACCTGTTAACTCTGGCCCAGCATCTACAAGTGGACTGAATATGGCCGAGGCATTAGTGCAGAATCCTCCTAGAGTTCGCACTCCTCCTCAGTTATTTATTGAAACTCAAAGGCTAGAGGAGTTGGCCCTGAAGCAATCACGACAACTAATACCTGTGACACCCCCTATGCCAAAAACAACGGGACTTGGCCCATCTGAAAAATTGAAGCCAAAATCACTAAGAGGAATTGATTCTTCTCCATCAACTGGTGGTAAGGTTGGACAGATTGGGTCATCTCAGCTCAATTCTCCACTTCGACAAACTGCCAGACCTGAAACTCCCAAGCAGCCTCAAGTGGGGAAGCTTCTAGTTCTGAAGCCAGTGAGAGAGAAGAATGGAGTTTCTAAATCTGTTAAATCTGATAGTTCCAGTCCGACAAAGGGAGGCAATACCAACAACAGCACTATTGGTGCCCCAACTGCTGGTATTAGTTCAGGTGGAAGTGCGGGTTTGATGATTACCAGGAAGGTGAAACCCTTATCGGATTCGAAAACAGTGCCCGTGTCATCAACATCTCTTTCAACTGGATTTGACTGTGTAACAGGGCAACGATCAAAGGATAACAGCTTAATGATTGAAGAGAAGAAACATCTATCTCAGGCTCAGAATCGAAGTGATTTTTTCAGAGCTTTGAGAAACAAGGCTTCAGGAACAGTTCCAGTCACAAGGATCCAGGATAAGTCAAGTACATCAACAGAGCCCAAAACTCTTGACCAAGAAAGAAATGGTGCCCCATACAGAGAGGGTAAAACAGAAGCAAATGAAAATGGTTCCATCGAGAGTGTGGGTGAGAACTCTGGTATATCTTTAGCTACTGTTGAGATAGCATGCTCTTGGAACAACAATGTGACTGATGCAAATGGTGTTGACCATGGAGAAATTCATGCTGCTGTGGATTCTAGGGAAACTGTCAATCCAACTTCTGTTAACAGCTACTCTGTTATGGGTGGATCTGAAGAGGAGGAGAATGCCTTCCTTCGGTCTCTTGGGTGGGAGGAAAATGCCGGGGGGGAAGAAGCACTAACAGAGGAGGAAATCAATTCATTCTATCAGGAGCAGATGAAATCAAGGGGGGTTGATGCTACATTTTGTCAGGGTAATTACAAACTTCAAAATGTGCCAGTTCAGATGCCTGTTGGAAGCTTGGAGAGTGTGTCATCTGGTATGAGCTCATCTGACTCTGAGCCTGATTCTGATTCCGATTCTTAG___CCTTAAGGTGATGGTAACACTATCAATTGTGTAGATTTGTCGGGATTTGTATTCGAAAACAATGCAGGAATATGATGCAACGAATTAGTAGGTTTTAATGTCGACAAGATTTAGAAAAACAGGATTGATTGAGACATTAAAATAGTGGCTCAGTCATCGTAAAGTTGCTAAAGTGTGAATAGAGAATATTTCAGTAGCACAGTTGTTACTTTTATCATCTATAGCTATCATGACAAAAGGGGTTGCTGTTGGAAACAATTTTACAGCGACCAATTCTGTAGGATTCAATTACTTGTGCAAGTGAGCATAATAAGTTTTCGTCCAAGCAGCATGCATTCATGAGTGCAGTCTTATGCTTCAATGACTGCAGCAGACGACTATCTGTGCCCTTTTTGGTAGGTCCATTGTTTTACCTGGCACTTTCTGAAGAGTAAGATGCTTCTGAATTTGTAACAGTGGCTGCTCTTGCCGCAACATTCATTATACGAGTCTCATGATTGAAGCGATGCCATTTTGCAAATAATTGTTCTGCCTTAATAATTGGGATTGGGAATCTTTTA

Fln Alignment:

Contig115___GAADVGRASSPGLTVSTGSNQGIAGSGLSAFGVDGWSSALADVSGLNGGSNGMLTSAQQVASGTSVLPVNSGPASTSGLNMAEALVQNPPRVRT--PPQLFIETQRLEELALKQSRQLIPVTPPMPKTTGLGPSEKLKPKSLRGIDSSPSTGGKVGQIGSSQLNSPLRQTARPETPKQPQVGKLLVLKPVREKNGXXXXXXXXXXXPTKGGNTNNSTIGAPTAGISSGGSAGLMITRKVKPLSDSKTVP-VSSTSLSTGFDCVTGQRSKDNSLMIEEKKHLSQAQNRSDFFRALRNKA----------SGTVPVTRIQDKS-----STSTEPKT------LDQERNGAPY-REGKTEANENGSIESVGENSGISLATVE----IAC-----SWNNNVTDANG---------VDHGEIHAAVDSRETVNPTSVNSYSVMGGSEEEENAFLRSLGWEENAGGEEALTEEEINSFYQEQMK
F6H1R2_____________GAPDIGRVTSPGLTSAI---QSLPIGNTVVIGGDGWTSALAEVPVIIGSNTTGVSSVQQSVSASSV---SVAPSTTSGLNMAETLVQGPARARANATPQLSVGTQRLEELALKQSRQLIPMTPSMPKT--LVPSPSDKPKSKIGLQ-------PLHLVNHSQRGGP----ARSDVTKTSNVGKLHVLKPSRERNG-VSPTAKDSLSPTMGSRVANSPLAVTP---SAAGSASLRSPRNNPTLASAERRPSVVLTSV--------------------EKRPTSQAQSRNDFFNLMRKKSSTNPPSAVPESGPAVSSSVSEKSDELITEVVTAPVTPKGRDILSSDNSGLDWSNENRGDKTENGNNEACGVSQNDRDDEIDNVNGDACDVSQRDQGDEVHDGNGDACDVSQKFLDNGEKHSSPD--EVLYP------------DEEEAAFLRSLGWEEN-GEDEGLTEEEINAFYKECMK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1184		60		40	1.0
1419	66		33		0.997452
1432	33	66			0.997452
2038	33	66			0.997452
2039	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain