SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107

Length: 2294 nt

UniGene Fasta

>sp_v3.0_unigene107
CGAAACATGTGGGAGTTGGCTTCGATTCTCAGCTTCTTTCACGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACGCCAAACGGCATGCTGGGCGATATACACATACCGCTACTGAAGGCAATTCCTCCGGTAATCAGAAGTGCTCTTGGGCGTGACACATGGGTGTTTGTATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGGGAATTTCCAATTATTTCAGCCCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGTGAGATTCGGGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTTAAGCATGGAGTTCAGATCTCAGCATTTCGTAACGAGCGGATCGGGGGGGATTCACATGGAACTTCCTACTGGTACGAGGATGATTCCATTATTGGTCACCGTTTATACAGGGAGATTCGGAAGATCGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTTACCTGTCAGTGGGAAACCATAGCAACCAATTTTGATGAATTTCAAGCTGTAGCAGAAAAACTTGCGTCAAGTAGAAATAAGATGGAAGCTGGGGTTGCAAAAAAACTTAATAATGATATTCTTCCTGAGCTTGAAAGGAACCAGAAGATAAAGGAAAAGGCGCTGAAAAAGCAACACAGACAAGCTATGCTTCTTGATGGCTTTCTAACCTCTCAAGGACCATCTTCAGGCCGTTCTCTCCGTTATCGTAAACCTGTTACTTACACATTTGATGAGTTTGATCGATCTATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTGTACTCAGAAAGTTCCCGGTTAGAGCTGAAAATCCAGCTGTAAATGGTAAACATAATGGTAACCTCGAGTATTCTGGTGCCACTTCTTCCAGTTTGAGGAACGGAAGTGGAGAAACTGATGCAGAACATGCAGTTGAACCTTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTAGAAGCTGTGTCAGACAACGAGGCAGATTTTGACAGTGATGAGGAGATAGTTGGGGAGGCAATATATGATGATGAATATATTAAAAGACGAAGGCGTAGAAAAATATCTAGTAGCTCAGAGGGTGATGAAGAATACCGAGGAGACGAGGAGAATATTGAAGACGAAGATGATGATGATTATGGCAATGCTCTAAGTACTAGTGAGGACATGGATGATTTTCACAATCGAAAATGGGGACAGAGTCAGAATATAAGATGGGGACAAAGACTTTCAAGTGGAAGAAAAAGGAAGGGACTCAAGTTGAAGTCTGTTGATGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCTATTCACAACATTGATTATAGACTATATGACATGTCAAGTTCTGAGGAAGAATATGCTGAAGACTTGGAGAAGCTAGCAGGATCAAGTAATGAAATTGATATGACCTAAAAGCCAATCTGATGTAAGTAACAGTGCTGATTATGATATGGAAAGTGAAGATTGTCTTGATGATATGGAAAAACCTAATGATGCAGAACAGTTTAGGAAGTCTGTTAATGGTGTGGATGGCCCACTCGGGAAAGCATCTTTAGAAGAAAGGATTAAACTTACAAGGGAACAACCTGCTGATGTCAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTCCAGGACATGATGATGGACCGGCAGCATGAGAAGTCAAACACAAAGATGCTACATATTGTCAAGTTTGAGAGGCCGATTAATCTGCCTTGGACAAGAAATATGAATGCCGCAGTGCCAATGGACTTGCTGTTGCAGCTCGTCTCATACTTTAATTGCTCTGCTGAATTTCTGTGATCTAATTTCTGCTTTTTAATTCCTTATTAGGTTATTAGACATTTGTTGTGTAGTCCTGATGACTCCAAAGCTCAGGTGTAAGATAACAAGGAAGTCTAAGAATGGTAGGAGATTCGTTCATCAAATTTTTGTAATGAGCAACAGTCGTTCCACTTGTAATCTAGTCTAACGCAAACATTTTGACATTGTGGCATATTGGCTAATTTTATTTCAGGAGAAAGATGACCTAATAATCCTGTAGATGTTTTTGTTGTATCACCTTCATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTTAATAACAAGAAACTACTTATGT

Ace file of the UniGene sp_v3.0_unigene107

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA ligase, putative n=1 Tax=Ricinus communis RepID=B9R920_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	At5g25580; Clgn; GSVIVT00000060001; GSVIVT00032552001; LOC_Os03g58820; OJ1118_E12.14; OSJNBa0087C10.11; Os07g0193600; OsI_13944; OsI_25237; OsJ_12998; OsJ_23422; PHYPADRAFT_117938; PHYPADRAFT_117997; PHYPADRAFT_121945; POPTRDRAFT_661911; POPTRDRAFT_661912

Source	GOs	Term	Type	e value	Identity
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18950.1	DDT domain superfamily chr1:6546539-6551549 FORWARD LENGTH=750	54%
RefSeq	Arabidopsis thaliana	NP_173329.2	DDT domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002324827.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6GTC1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 84 aas, putative chimeric sequence, your sequence is shorter than subject: 524 - 718

Fln protein: RNMWELASILSFFHVFRPILNIKVEFTAEELETALITPNGMLGDIHIPLLKAIPPVIRSALGRDTWVFVLCKKLKDRWYQVAEGEFPIISARGEENIAYKELDPGSRVLILKALCEIRVEQEDIQPHIYSSLKHGVQISAFRNERIGGDSHGTSYWYEDDSIIGHRLYREIRKIEVKNKTKGKGRLSLPVVTCQWETIATNFDEFQAVAEKLASSRNKMEAGVAKKLNNDILPELERNQKIKEKALKKQHRQAMLLDGFLTSQGPSSGRSLRYRKPVTYTFDEFDRSISEAIKVTKKKQPSPEPVLRKFPVRAENPAVNGKHNGNLEYSGATSSSLRNGSGETDAEHAVEPLTRSDRWRRRPQRYSEKEFVEAVSDNEADFDSDEEIVGEAIYDDEYIKRRRRRKISSSSEGDEEYRGDEENIEDEDDDDYGNALSTSEDMDDFHNRKWGQSQNIRWGQRLSSGRKRKGLKLKSVDELQSGLRRSKRAIHNIDYRLYDMSSSEEEYAEDLEKLAGSSNEIDMT*

Protein Length: 525

Fln nts: CGAAACATGTGGGAGTTGGCTTCGATTCTCAGCTTCTTTCACGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACGCCAAACGGCATGCTGGGCGATATACACATACCGCTACTGAAGGCAATTCCTCCGGTAATCAGAAGTGCTCTTGGGCGTGACACATGGGTGTTTGTATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGGGAATTTCCAATTATTTCAGCCCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGTGAGATTCGGGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTTAAGCATGGAGTTCAGATCTCAGCATTTCGTAACGAGCGGATCGGGGGGGATTCACATGGAACTTCCTACTGGTACGAGGATGATTCCATTATTGGTCACCGTTTATACAGGGAGATTCGGAAGATCGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTTACCTGTCAGTGGGAAACCATAGCAACCAATTTTGATGAATTTCAAGCTGTAGCAGAAAAACTTGCGTCAAGTAGAAATAAGATGGAAGCTGGGGTTGCAAAAAAACTTAATAATGATATTCTTCCTGAGCTTGAAAGGAACCAGAAGATAAAGGAAAAGGCGCTGAAAAAGCAACACAGACAAGCTATGCTTCTTGATGGCTTTCTAACCTCTCAAGGACCATCTTCAGGCCGTTCTCTCCGTTATCGTAAACCTGTTACTTACACATTTGATGAGTTTGATCGATCTATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTGTACTCAGAAAGTTCCCGGTTAGAGCTGAAAATCCAGCTGTAAATGGTAAACATAATGGTAACCTCGAGTATTCTGGTGCCACTTCTTCCAGTTTGAGGAACGGAAGTGGAGAAACTGATGCAGAACATGCAGTTGAACCTTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTAGAAGCTGTGTCAGACAACGAGGCAGATTTTGACAGTGATGAGGAGATAGTTGGGGAGGCAATATATGATGATGAATATATTAAAAGACGAAGGCGTAGAAAAATATCTAGTAGCTCAGAGGGTGATGAAGAATACCGAGGAGACGAGGAGAATATTGAAGACGAAGATGATGATGATTATGGCAATGCTCTAAGTACTAGTGAGGACATGGATGATTTTCACAATCGAAAATGGGGACAGAGTCAGAATATAAGATGGGGACAAAGACTTTCAAGTGGAAGAAAAAGGAAGGGACTCAAGTTGAAGTCTGTTGATGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCTATTCACAACATTGATTATAGACTATATGACATGTCAAGTTCTGAGGAAGAATATGCTGAAGACTTGGAGAAGCTAGCAGGATCAAGTAATGAAATTGATATGACCTAA___AAGCCAATCTGATGTAAGTAACAGTGCTGATTATGATATGGAAAGTGAAGATTGTCTTGATGATATGGAAAAACCTAATGATGCAGAACAGTTTAGGAAGTCTGTTAATGGTGTGGATGGCCCACTCGGGAAAGCATCTTTAGAAGAAAGGATTAAACTTACAAGGGAACAACCTGCTGATGTCAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTCCAGGACATGATGATGGACCGGCAGCATGAGAAGTCAAACACAAAGATGCTACATATTGTCAAGTTTGAGAGGCCGATTAATCTGCCTTGGACAAGAAATATGAATGCCGCAGTGCCAATGGACTTGCTGTTGCAGCTCGTCTCATACTTTAATTGCTCTGCTGAATTTCTGTGATCTAATTTCTGCTTTTTAATTCCTTATTAGGTTATTAGACATTTGTTGTGTAGTCCTGATGACTCCAAAGCTCAGGTGTAAGATAACAAGGAAGTCTAAGAATGGTAGGAGATTCGTTCATCAAATTTTTGTAATGAGCAACAGTCGTTCCACTTGTAATCTAGTCTAACGCAAACATTTTGACATTGTGGCATATTGGCTAATTTTATTTCAGGAGAAAGATGACCTAATAATCCTGTAGATGTTTTTGTTGTATCACCTTCATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTTAATAACAAGAAACTACTTATGT

Fln Alignment:

Contig107___RNMWELASILSFFHVFRPILNIKVEFTAEELETALITPNGMLGDIHIPLLKAIPPVIRSALGRDTWVFVLCKKLKDRWYQVAEGEFPIISARGEENIAYKELDPGSRVLILKALCEIRVEQEDIQPHIYSSLKHGVQISAFRNERIGGDSHGTSYWYEDDSIIGHRLYREIRKIEVKNKTKGKGRLSLPVVTCQWETIATNFDEFQAVAEKLASSRNKMEAGVAKKLNNDILPELERNQKIKEKALKKQHRQAMLLDGFLTSQGPSSGRSLRYRKPVTYTFDEFDRSISEAIKVTKKKQPSPEPVLRKFPVRAENPAVNGKHNG------NLEYSGATSSSLRNGSGETDAEHAVEPLTRSDRWRRRPQRYSEKEFVEAVSDNEADFDSDEEIVGEAIYDDEYXXXXXXXXXXXXXEGDEEYR-GXXXXXXXXXXXXYGNALSTSEDMDDFHNRKWGQSQNIRWGQRLSSGRKRKGLKLKSVDELQSGLRRSKRAIHN-IDYRLYDMSSSEEEYAEDLEKLA--GSSNEID
F6GTC1_____________RSMWELASILNFLHVFRPLLNIAVEFSAEEFETALITPNNTLSDIHIPLLKAIPPVTRMALTRGTWVTVLCRKLRDWWHWVAEGEIPIVASQGAEVGMYNALDPGVRVVILKALCDIRVEQEDIRIFIDNSIKHGVQLSAFRKERVGGDSHGISYWYEDDPIIGHRLYREIRKVEVK-KAKVKGSQCLPNASYQWETVATNLDEFQDVSEKLFSSKNRTEASLGKKLKNDMLPEIEKVHKRKERMLKKQHRQALLLDNFLSVDGLAPGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEPTVRREGVTKPEPSTNGRWSGPSQAPQHVNFNALSPKS--PDYDEIDDEHKSEPLDRSNRRRQRPQRYSEKEFVEAVSDNDADFDSDDDIVGEAVYDEEYLRKRKQRKLSSSSEGDEEYRWDEENPEDEEEEEEEEESLSISEDSDGPQRFK------------KLPGRTRRETKLRSVDELQSGLRRSKRATRNRINYRQYDLSESETESLKQEKSNASDGRSDESD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
737		25		75	0.996473
1145			75	25	0.996473
1850	20		80		0.999996
1960	25	75			1.0
1989		16		83	0.994512
2194	83		16		0.994512
2220	25		75		0.996473
2236		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1279	1290	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain