SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3

Length: 3202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3
ATGTATTTAAATTAAATGAATTAATCCCAATAAATTAAATCAATTTGCAGATTGAAGTATCAAAACCCTACAAACATCAAACACCATGGACCTGGCCATATTTATTGGCATTTTCCTCTTCCTGGTCCCTTTTATGGTTATTATGGTGCTTGAGAGTAGGAAACGGAGGGGCCAAACTGAAGAGGTGGATGAAGAAGCCGGAGGAAGTGAAATGGGTGAAAACCCCGGTGAGGAGGAGGTGGAGGAGGGTGAACATGACCCTCAAAAAACTAAACAAGACCAAACTCCATTGTGGAAATATGTTCACAGGGCTGAAACAGGGAGAGGGGGTGGAACCACTAAATTTCATTGCCCCCATTGCAACACTGATTACACAGGTTCATACACCCGTGCTAGAAGACACCTCTGCGGGAAAAGGCCATGGGATGGAGATAAACAAATAGGAATCAAAACTTGTACAGCGGTGTCAGCAGCGGATAGAGCCAAATACATAAGGGAAGAGGAGGAAGCCCAATACAGATCAAAAAAATCAAGGGGTTTCTTTGAACCAAGCTCACAATCACAGCACAAAGAACTCCTTCAGCATCCTCCCAAGGCAGTGGATATGGAGGCACAGGGTCATCATCTTTAAGGCGTAGAACCATATCAGATTTCCTTGATGAGGGGTGTAGGAATGATGTGGATTCAAAGGTTTACAGGTTTCTCTATGCATGTGGGATACCATTCAATGTTCTTCGCTCACCTTATTGGCACGAAATGGTTTCTGCCATAAATGATGCCCTTAAAGGATACAAGAGCCCTGGGTATGACAAGGCAAGAACTGTTGGCCTTGATCATGAAAAAGCAAAAATATCACATTCTTTGAATAGAATGACAAGTTCTTGGACTGACCATGGGGTGTCCATTGTATCTGATGGATGGACAAATGTAAAAGGCAAGCCATTGATAAGTGTTCTTGCTGTGTCTGTTAGTGGTGCCATCTTTCTTTCTGCACATGATTACTCAGACAAGTTCAAGACCGCCATCAACATTGCAGAAGCATTACTTGAAACAATTGACCGTATTGGGCCATACAATGTCATCCAAGTCATCACTGATAATGCTCCTAATTGTAAGGCAGCGGGAGCAATTATTGAGGATAAATACCCCAACATATTTTGGTCTGGGTGTTTGGTTCACACATTGAACCTTTTGATGCATGATATTGTTAAGAACAAAAATGAACAATACAAATGGATTGGTGATTTGTACAAGAAAGGCAAACAAATGATAAAATTTATTACAAATCATAGCAATACCCATGGCCTTTTCCGCAGTCACTCGAGATTGGAGTTGTTGAAGATTGCGAAGACTAGATTTGGTAGCTATTACCTCACCTTCAGGCGCCTTTTGAAGGTAAGAGAGGCATTGGCTAGCATGGTATCAAGTCCACATTGGCAGGTATTAAAGGAAAGGGCTACAAATGCAGCTGACATGGGAGGTTTTGAAATGGTGGAGGAGGCCGCTCTTGATGGTCAGTTTTGGACAAGTGTGAGGCAAGTATTGGATTTCACCAAGCCCATTTATCACATGATTCGGTTTGCAGATACAGACAAACCAGTGATTGGCGAGGTGTATGAGCAGATGGATACCATGTTGGGGCAAATAAAAGATATTGTTCATAACAGAGATCCCGACTTGTACAAACTGATTCATGATTGTGTGTGTGAACGGTGGAATAGACTTAATCTTCCACTACATTGCTTGGCGTATATCCTTACGCCAAAATACTACTCTACATCTTGGTTGGGCCAACCTGCAGCAGGGGGTGGGGTTAGGACCAAACCCCATTTAGATCCAGAGGTAACTAAAGGATATTTGGAAGCATTAGAAAAGTTGGTACCTGACAGGGAGGAATGTGCAGCTGTGCGCCTTGAAATAGGCAGATACTTCAGTGGCACTGGTTTGTATGGTAACTTCCATGCAATGGACGACATAGATAGATTTGATACTCTCACATGGTGGGAAACATATGGCGGCCACGGACTTTTGCCAAAATTGGCAAAAAAAGTTCTTTCACAGGTTGTAAATACTTCTTCTGCAGAGAGGTGTTGGAGCACCTACAGCTACATACATAATGTGAAAAGAAACAGACTCAATGAAAACCGAGCAGAAAGCTTGGTTTATGTGCACTACAACTTGAGGTTGTTGAGTCATTACTGTGATCGGGCTTATGAGGATCCCACATATAAAATTTGGGACAATCACCCAGAGGATGACAATTTGGAGGATGGCATTGTACATATTGAAGAACTGGAAGAGGAACTTGTAAGGGATGAAGATGAAGCAGCTGCAGCAGCCATGCCACCTCCACCTCCACCTCCATCTTCTAGTAGCAGTGCTCGAGGTCCGAGTCTTGTTCCTTTGCTGTCGCCACCTCCATCTACACCCTCACGTGGAGGTTCTAGTTCTGGTCGTCGGTCTGTGCGGGAGACTCCTAGAAGACCACCACGACCTGCTTATACTCCTGGAGACTCTCGTGGCAAGGGCCACATGTAGATTTACAGTTTACTTGTCTTTTTTAGTTTCTATTAGACTTTAGTTTTCATAACTGTTGAGTTTTGAGTCCTTGACTCTTGACTCTTGACTCTTTCATATCATAATGATATTTTTTGTAAACAATATATCACTGTGACAATGAAAATTTGAAGTTTGAAGTTGGGCCTTGGCAATTATAACTCATTGGTAATGATTGTGAATTATGAATATGATGCTTCGTGAAAGACTAAAGTTGTTTCATTTCATTTCATTATTCATGACCATGTTTCATTTTATAAATTTTTAACATTTCATATCATGTTAACAGTTAGAAGTTAGGACTTAGAAATATCTTCGATATTACTTCTTGTAATGGTTAAACTTTGCTTACAAGTACAACTTTGGTGATCAGTGATGATAAATGTTATTGAATTTTCAATTTTGAAAGCTTGAAGTTGAAACTTTAAGATTGAATTTGATGAATCATGATTTATGAGACTCAATATGTTGCAGTTGTAATATGTATTTTACTAACTTGTGGACATGGTTGATGACGATTATAATTTCTAGATGATTGATGTGATATGGTTCAATGATCAATCTATGTTTTTTTATGTTTTTTATGTCTAATTCATCATTCTACATGTTTTTGTTGACATATATGTATCAAAAATTAAAAAATATA

Ace file of the UniGene sp_v3.0_unigene3 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ	-	-	0.0	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 37 aas, putative chimeric sequence, your sequence is longer than subject: 594 - 478

Fln protein: MVSAINDALKGYKSPGYDKARTVGLDHEKAKISHSLNRMTSSWTDHGVSIVSDGWTNVKGKPLISVLAVSVSGAIFLSAHDYSDKFKTAINIAEALLETIDRIGPYNVIQVITDNAPNCKAAGAIIEDKYPNIFWSGCLVHTLNLLMHDIVKNKNEQYKWIGDLYKKGKQMIKFITNHSNTHGLFRSHSRLELLKIAKTRFGSYYLTFRRLLKVREALASMVSSPHWQVLKERATNAADMGGFEMVEEAALDGQFWTSVRQVLDFTKPIYHMIRFADTDKPVIGEVYEQMDTMLGQIKDIVHNRDPDLYKLIHDCVCERWNRLNLPLHCLAYILTPKYYSTSWLGQPAAGGGVRTKPHLDPEVTKGYLEALEKLVPDREECAAVRLEIGRYFSGTGLYGNFHAMDDIDRFDTLTWWETYGGHGLLPKLAKKVLSQVVNTSSAERCWSTYSYIHNVKRNRLNENRAESLVYVHYNLRLLSHYCDRAYEDPTYKIWDNHPEDDNLEDGIVHIEELEEELVRDEDEAAAAAMPPPPPPPSSSSSARGPSLVPLLSPPPSTPSRGGSSSGRRSVRETPRRPPRPAYTPGDSRGKGHM*

Protein Length: 595

Fln nts: ATGTATTTAAATTAAATGAATTAATCCCAATAAATTAAATCAATTTGCAGATTGAAGTATCAAAACCCTACAAACATCAAACACCATGGACCTGGCCATATTTATTGGCATTTTCCTCTTCCTGGTCCCTTTTATGGTTATTATGGTGCTTGAGAGTAGGAAACGGAGGGGCCAAACTGAAGAGGTGGATGAAGAAGCCGGAGGAAGTGAAATGGGTGAAAACCCCGGTGAGGAGGAGGTGGAGGAGGGTGAACATGACCCTCAAAAAACTAAACAAGACCAAACTCCATTGTGGAAATATGTTCACAGGGCTGAAACAGGGAGAGGGGGTGGAACCACTAAATTTCATTGCCCCCATTGCAACACTGATTACACAGGTTCATACACCCGTGCTAGAAGACACCTCTGCGGGAAAAGGCCATGGGATGGAGATAAACAAATAGGAATCAAAACTTGTACAGCGGTGTCAGCAGCGGATAGAGCCAAATACATAAGGGAAGAGGAGGAAGCCCAATACAGATCAAAAAAATCAAGGGGTTTCTTTGAACCAAGCTCACAATCACAGCACAAAGAACTCCTTCAGCATCCTCCCAAGGCAGTGGATATGGAGGCACAGGGTCATCATCTTTAAGGCGTAGAACCATATCAGATTTCCTTGATGAGGGGTGTAGGAATGATGTGGATTCAAAGGTTTACAGGTTTCTCTATGCATGTGGGATACCATTCAATGTTCTTCGCTCACCTTATTGGCACGAA_-_ATGGTTTCTGCCATAAATGATGCCCTTAAAGGATACAAGAGCCCTGGGTATGACAAGGCAAGAACTGTTGGCCTTGATCATGAAAAAGCAAAAATATCACATTCTTTGAATAGAATGACAAGTTCTTGGACTGACCATGGGGTGTCCATTGTATCTGATGGATGGACAAATGTAAAAGGCAAGCCATTGATAAGTGTTCTTGCTGTGTCTGTTAGTGGTGCCATCTTTCTTTCTGCACATGATTACTCAGACAAGTTCAAGACCGCCATCAACATTGCAGAAGCATTACTTGAAACAATTGACCGTATTGGGCCATACAATGTCATCCAAGTCATCACTGATAATGCTCCTAATTGTAAGGCAGCGGGAGCAATTATTGAGGATAAATACCCCAACATATTTTGGTCTGGGTGTTTGGTTCACACATTGAACCTTTTGATGCATGATATTGTTAAGAACAAAAATGAACAATACAAATGGATTGGTGATTTGTACAAGAAAGGCAAACAAATGATAAAATTTATTACAAATCATAGCAATACCCATGGCCTTTTCCGCAGTCACTCGAGATTGGAGTTGTTGAAGATTGCGAAGACTAGATTTGGTAGCTATTACCTCACCTTCAGGCGCCTTTTGAAGGTAAGAGAGGCATTGGCTAGCATGGTATCAAGTCCACATTGGCAGGTATTAAAGGAAAGGGCTACAAATGCAGCTGACATGGGAGGTTTTGAAATGGTGGAGGAGGCCGCTCTTGATGGTCAGTTTTGGACAAGTGTGAGGCAAGTATTGGATTTCACCAAGCCCATTTATCACATGATTCGGTTTGCAGATACAGACAAACCAGTGATTGGCGAGGTGTATGAGCAGATGGATACCATGTTGGGGCAAATAAAAGATATTGTTCATAACAGAGATCCCGACTTGTACAAACTGATTCATGATTGTGTGTGTGAACGGTGGAATAGACTTAATCTTCCACTACATTGCTTGGCGTATATCCTTACGCCAAAATACTACTCTACATCTTGGTTGGGCCAACCTGCAGCAGGGGGTGGGGTTAGGACCAAACCCCATTTAGATCCAGAGGTAACTAAAGGATATTTGGAAGCATTAGAAAAGTTGGTACCTGACAGGGAGGAATGTGCAGCTGTGCGCCTTGAAATAGGCAGATACTTCAGTGGCACTGGTTTGTATGGTAACTTCCATGCAATGGACGACATAGATAGATTTGATACTCTCACATGGTGGGAAACATATGGCGGCCACGGACTTTTGCCAAAATTGGCAAAAAAAGTTCTTTCACAGGTTGTAAATACTTCTTCTGCAGAGAGGTGTTGGAGCACCTACAGCTACATACATAATGTGAAAAGAAACAGACTCAATGAAAACCGAGCAGAAAGCTTGGTTTATGTGCACTACAACTTGAGGTTGTTGAGTCATTACTGTGATCGGGCTTATGAGGATCCCACATATAAAATTTGGGACAATCACCCAGAGGATGACAATTTGGAGGATGGCATTGTACATATTGAAGAACTGGAAGAGGAACTTGTAAGGGATGAAGATGAAGCAGCTGCAGCAGCCATGCCACCTCCACCTCCACCTCCATCTTCTAGTAGCAGTGCTCGAGGTCCGAGTCTTGTTCCTTTGCTGTCGCCACCTCCATCTACACCCTCACGTGGAGGTTCTAGTTCTGGTCGTCGGTCTGTGCGGGAGACTCCTAGAAGACCACCACGACCTGCTTATACTCCTGGAGACTCTCGTGGCAAGGGCCACATGTAG___ATTTACAGTTTACTTGTCTTTTTTAGTTTCTATTAGACTTTAGTTTTCATAACTGTTGAGTTTTGAGTCCTTGACTCTTGACTCTTGACTCTTTCATATCATAATGATATTTTTTGTAAACAATATATCACTGTGACAATGAAAATTTGAAGTTTGAAGTTGGGCCTTGGCAATTATAACTCATTGGTAATGATTGTGAATTATGAATATGATGCTTCGTGAAAGACTAAAGTTGTTTCATTTCATTTCATTATTCATGACCATGTTTCATTTTATAAATTTTTAACATTTCATATCATGTTAACAGTTAGAAGTTAGGACTTAGAAATATCTTCGATATTACTTCTTGTAATGGTTAAACTTTGCTTACAAGTACAACTTTGGTGATCAGTGATGATAAATGTTATTGAATTTTCAATTTTGAAAGCTTGAAGTTGAAACTTTAAGATTGAATTTGATGAATCATGATTTATGAGACTCAATATGTTGCAGTTGTAATATGTATTTTACTAACTTGTGGACATGGTTGATGACGATTATAATTTCTAGATGATTGATGTGATATGGTTCAATGATCAATCTATGTTTTTTTATGTTTTTTATGTCTAATTCATCATTCTACATGTTTTTGTTGACATATATGTATCAAAAATTAAAAAATATA

Fln Alignment:

Contig3___TWWETYGGHG-LLPKLAKKVLSQVVNTSSAERCWSTYSYIHNVKRNRLNENRAESLVYVHYNLRL
D5A8W4___________TWWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1229	66	33			0.997452
1282		25		75	0.996473
1297	33		66		0.997452
1302	33		66		0.997452
1323	33		66		0.997452
1346		66		33	0.997452
1348	66		33		0.997452
1399		66	33		0.997452
1405		66	33		0.997452
1484		33		66	0.997452
1494		66		33	0.997452
2687	77			11	0.968132
2689		55		44	1.0
2698	11		88		0.923564
2699		88		11	0.923564
2711		88		11	0.923564
2715			11	88	0.923564
2734	12		87		0.992554
2735		85		14	0.993533
2746	14		85		0.993533
2747		85		14	0.993533
2750			14	85	0.993533
2752	14	85			0.993533
2760		14	85		0.993533
2775	20	20	60		0.99255
2779		80		20	0.995493
2803	75			25	0.996473
2820	50		50		1.0
2827	25		75		0.996473
2843	25		75		0.996473
2848			75	25	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
413	429	AATGA AATGA AATGA AA	17
572	595	AAGAGTC AAGAGTC AAGAGTC AAG	24
839	859	TGGAGG TGGAGG TGGAGG TGG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain