SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26606

Length: 559 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene26606
CGTCGTGACCTTGGCTGTCACTCAAAATTCGAAGTTGTCAGGCTTCTGCACATGGATTACAAGATGCTCATACGCTCTGCTATAAACGCTCATGAACTTGTTGCTGTCCACATGAATTATATAGCAAGCAGTTGGTTGTTTTAACTGAACAACATTATTAGTCGTTGCTGCAGTTGTTGTTTTAACCGAACAACATTCTTAGTCGTTGTTGTGTTGAGATCTGTGCAATGGCACTTCGTCTGCTGTTTGTTTATCTTACTACGTTGCTCTTGCTCAGTCTGCTGTGGGAAAGCCAGGGTGTCAGTTCTTTTGTGAGGACTGCTAATGGCCAATCCAACATAGCAACTCTATATGGAAGCCAACAAGGCAGTCTCCAACCTGCAGAATGCTCACCGAGGTGCCAAGCAAGGTGCTCAGGGACAGCGTACAAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATATGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAAGCCCAAAATG

Ace file of the UniGene sp_v2.0_unigene26606 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula]	-	-	2.0e-31	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	gibberellin induced protein	-	-	5.60519e-43	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP30

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MALRLLFVYLTTLLLLSLLWESQGVSSFVRTANGQSNIATLYGSQQGSLQPAECSPRCQARCSGTAYKKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGSPK

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTCGAAGTTGTCAGGCTTCTGCACATGGATTACAAGATGCTCATACGCTCTGCTATAAACGCTCATGAACTTGTTGCTGTCCACATGAATTATATAGCAAGCAGTTGGTTGTTTTAACTGAACAACATTATTAGTCGTTGCTGCAGTTGTTGTTTTAACCGAACAACATTCTTAGTCGTTGTTGTGTTGAGATCTGTGCA_-_ATGGCACTTCGTCTGCTGTTTGTTTATCTTACTACGTTGCTCTTGCTCAGTCTGCTGTGGGAAAGCCAGGGTGTCAGTTCTTTTGTGAGGACTGCTAATGGCCAATCCAACATAGCAACTCTATATGGAAGCCAACAAGGCAGTCTCCAACCTGCAGAATGCTCACCGAGGTGCCAAGCAAGGTGCTCAGGGACAGCGTACAAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATATGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAAGCCCAAAATG

Fln Alignment:

Contig26606___ANGQSNIATLYGSQQGSLQPAECSPRCQARCSGTAYKKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGSPK
A9NP30_______________SNGDTWMQQKRGRGSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
47	88		11		0.923564
199		82		17	1.0
214	82		17		1.0
215	82			17	1.0
216	82			17	1.0
241	83		16		1.0
243		16	83		1.0
249	88		11		0.999937
265		29	70		1.0
286	88	11			0.999952
302		55		44	1.0
308	55		44		1.0
324	25		75		1.0
328	25		75		1.0
330		5		95	0.997749
338	30	25	45		1.0
352		69	30		1.0
354	56		43		1.0
357	56		43		1.0
358		56	43		1.0
370	2	43		54	1.0
371	40	2	2	54	1.0
376	75		24		1.0
378		43		56	1.0
385	86		11		1.0
406			55	44	1.0
420			27	72	1.0
444		18		81	0.999994
448			10	90	0.90298
450	87	12			0.992554
451		12		37	1.0
452		25		75	1.0
453	14	14	71		0.984337
454	28	14		57	1.0
455	16		83		0.994512
469			40	60	1.0
473		40		60	1.0
477	40	40			1.0
481			33	66	0.997452
483		33		66	0.997452
487	66	33			0.997452
488	33		66		0.997452
496		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain