SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26601

Length: 2937 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene26601
CGTCGTGACCTTGGCTGTCACTGGGATCTGCATTGCTGTGTTCTGCTCTGCAGGTCCTCTTGAGCAAAAAATTCCTTCAGTAGGAAGGGGGTGTATTTTCTCTGCGATTCGCACCCAATACTTCGTTGAAGGGGTGCCTGTAATTGCATGAGAATTTCATTGTTACATCTCACAGAAACATATAAATTTACCTGCAGGGTGAACTCTGAGAATTGTGAAAATGACTGTGACTCCTGGTATTTCTATCGTGGACGGGCAGTTGATGGTCTTGGGCCAATGTGTTTTGTCCAACGTTCACGGGAATATAACCTTGACTCCTGCTTCAGGTGTGGGAATGGTTAACGGTGCGTTTTTGGGAGCCACGTCGGACCAGAGCAAGAGTCATCATATTTTTCCTATTGGGCAGCTCGAAGGCCTTCGTTTTTTGTCTTTGTTCCGCTTCAAGCTCTGGTGGATGACACAGAGGATGGGCTCATATGGTAGAGATGTCCCATTTGAGACTCAATTTTTGCTAGTTGAGGGTAGTGAAGGTTCACCTCTGAGCAATGGTGTGGACGATGGCCTTGGAGAGCCAACAATCTATATTGTTTTCTTGCCACTGTTGGAAGGATCTTTCAGAGCAGTTTTGCAAGGAAATGAAAACAATGAGCTTGAAATGTGTCTGGAAAGCGGAGATCCTACTGTTGAGACATCTCAAGGAGTTTATTCAGTTTTTGTTGGTGCTGGAACGGATCCATATGAAGTGATTACTAGTGCAGTAAAGGCTGTTGAGAGGCATTCCAAAACCTTTGCCCATCGTGAAAGAAAGACGTTACCTGATATACTCAATTGGTTTGGGTGGTGTACATGGGACGCATTTTACACAGATGTCTCAGCCGAGGGTGTAAAACAAGGTTTAGAAAGTCTAGAGAAAGGGGGCACCCCTCCAAAGTTTCTGATTCTTGATGATGGCTGGCAATCTGTTGAAATGGACCCTAATGCAAAGCCTTCTCCAGTTGGCAATACAGCAAATTTTGCAAATCGGCTGACACATATAAAAGAGAATTATAAGTTTCAAAAAGATGGAAAGACTGGTCAGAGACAAGAGGATCCTGCTTTGGGCCTCAGACACATTGTTTCAGAAGCAAAGAAGACCCACAATTTAAAGTACATCTATGTTTGGCATGCTATCACTGGTTACTGGGGAGGAGTTAAGCCTGATGTTTCTGGAATGGAGCATTATAATTCAAAAATGTCCTTCCCTGTTGAACCTCATGGGATTCTTCATCACCAACCAGACGAGGCATTAGAATGCATAAAACTAAATGGATTGGGCTTAGTCCATCCCAAAAATGTGTTTCAATTTTATGACGATCTCCACTCGTATCTAGCAAGTGCTGGCATTAATGGTGTCAAAGTGGACGTCCAGAATATTATTGAGACGTTAGGTGCAGGGCATGGTGGTCGTGTTAAATTGGCCAGCCAGTATCATCAAGCAATGGAGGCTTCTATTGCTCGAAATTTCCCTGATAATGGGATAATTGCTTGTATGAGTCATAACACTGATGGTCTTTACAGTTCGAAACAGACTGCCGTTATAAGAGCCTCCGATGATTTCTGGCCAAGGGATCCTGCATCACATACCATTCATATTGCTTCTGTAGCCTACAACAGCGTTTTCTTGGGAGAGTTTATGCAGCCTGATTGGGATATGTTCCATAGTCTTCATCCAATGGGTGAATACCATGCCGCTGCTCGAGCTGTTGGGGGGTGCTCAATTTATGTCAGTGACAAACCTGGTGAACATGATTTTGACTTGTTGAAGAAGATCGTTCTTCCAGATGGATCCTTATTACGAGCACAGCTTCCAGGAAGGCCTACAAAAGATTGCTTGTTTACTGATCCAGCTCGTGATGGGACAAACCTCCTAAAACTTTGGAACTTGAACAAGCATACTGGAGTTATCGGTGTCTTCAACTGTCAAGGTGCCGGGTGGTGCAGGGTTGACAAAAAGAATCTGGTTCACGATTCCCAACCCAAAGCTATTACTGGTGCCATTCGCTCAATGGATGTAGATTATTTACCAAAAGTTGCAGATGAAAATTGGGACGGTGATTCCGTTGTATACTCTCACAGAGGGGGAGAGCTTGTCTGTCTTCCTAAAGGTGCAGCTTTACCGATTACTCTCAAAGCACGGGAGTATGAAGTTTTCACAGTTGTTCCTCTAAAGGGGTTAGCCAACGGCATCTCTTTTGCTCCCATTGGACTGATCAAAATGTTCAACTCCGGAGGAGCTATTAGTGCATATGAGTTCGATCCAAACACTTCAACAGTGTATTTGAAGGTTCGAGGTTGCGGGGATTTCGGAGCATATTGTTCTGTGAGGCCACAAGCCGTGTACGTGGATTCTACCCAGATAGGATTCAGCTATGAAGAAGAATGTGGTCTGACAACTTTCACATTGAGTGTGCCAGAAACAGAATTATATTTATGGGACATCAGAATTGACATATAAATGTTTTAACCAGTTTAGATTTAGGTGCTCTGCATAGTTCCCGCTTGCTAAAGATGTTTACCGGTCTGAATGCAAGAACCATGATGCCCCCAATTTTACAAGAAGGAAAGCAGTGTTAGTGTTATTTGTGTAGTTGGTTATCTTAGAGCACTAAATTTAAAGACTAGCGTTGTGACTTGTCATGTATATTATCTTCAGTTCCTCGTAATCTCAATTAGGATTGCCGGGCCATTTGGTAGTTCCAGAAAATTCTTTTTGTCATGTCTGGCATGTGTTGGGCTTCATTTTAATGCTGCTTGATGTGGTTCTCATGTGGAGCATTTTGTGGTCGAGTTTCCTGTGTCACATATATAGGTGCATCATATATTCAGATTTTTTTGTTATGGGTGAACATATATTCGGATTTTTATGATATGGGTGCATCTTATATTACGGAAATTTTT

Ace file of the UniGene sp_v2.0_unigene26601 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	alkaline alpha galactosidase i	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	81%
Blast2go	mannitol biosynthetic process	GO:0019593	Biological Process	81%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	response to water deprivation	GO:0009414	Biological Process	81%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	81%
Blast2go	raffinose family oligosaccharide biosynthetic process	GO:0010325	Biological Process	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: your sequence is longer than subject: 758 - 338

Fln protein: MTVTPGISIVDGQLMVLGQCVLSNVHGNITLTPASGVGMVNGAFLGATSDQSKSHHIFPIGQLEGLRFLSLFRFKLWWMTQRMGSYGRDVPFETQFLLVEGSEGSPLSNGVDDGLGEPTIYIVFLPLLEGSFRAVLQGNENNELEMCLESGDPTVETSQGVYSVFVGAGTDPYEVITSAVKAVERHSKTFAHRERKTLPDILNWFGWCTWDAFYTDVSAEGVKQGLESLEKGGTPPKFLILDDGWQSVEMDPNAKPSPVGNTANFANRLTHIKENYKFQKDGKTGQRQEDPALGLRHIVSEAKKTHNLKYIYVWHAITGYWGGVKPDVSGMEHYNSKMSFPVEPHGILHHQPDEALECIKLNGLGLVHPKNVFQFYDDLHSYLASAGINGVKVDVQNIIETLGAGHGGRVKLASQYHQAMEASIARNFPDNGIIACMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMGEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVIGVFNCQGAGWCRVDKKNLVHDSQPKAITGAIRSMDVDYLPKVADENWDGDSVVYSHRGGELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKVRGCGDFGAYCSVRPQAVYVDSTQIGFSYEEECGLTTFTLSVPETELYLWDIRIDI*

Protein Length: 759

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGATCTGCATTGCTGTGTTCTGCTCTGCAGGTCCTCTTGAGCAAAAAATTCCTTCAGTAGGAAGGGGGTGTATTTTCTCTGCGATTCGCACCCAATACTTCGTTGAAGGGGTGCCTGTAATTGCATGAGAATTTCATTGTTACATCTCACAGAAACATATAAATTTACCTGCAGGGTGAACTCTGAGAATTGTGAAA_-_ATGACTGTGACTCCTGGTATTTCTATCGTGGACGGGCAGTTGATGGTCTTGGGCCAATGTGTTTTGTCCAACGTTCACGGGAATATAACCTTGACTCCTGCTTCAGGTGTGGGAATGGTTAACGGTGCGTTTTTGGGAGCCACGTCGGACCAGAGCAAGAGTCATCATATTTTTCCTATTGGGCAGCTCGAAGGCCTTCGTTTTTTGTCTTTGTTCCGCTTCAAGCTCTGGTGGATGACACAGAGGATGGGCTCATATGGTAGAGATGTCCCATTTGAGACTCAATTTTTGCTAGTTGAGGGTAGTGAAGGTTCACCTCTGAGCAATGGTGTGGACGATGGCCTTGGAGAGCCAACAATCTATATTGTTTTCTTGCCACTGTTGGAAGGATCTTTCAGAGCAGTTTTGCAAGGAAATGAAAACAATGAGCTTGAAATGTGTCTGGAAAGCGGAGATCCTACTGTTGAGACATCTCAAGGAGTTTATTCAGTTTTTGTTGGTGCTGGAACGGATCCATATGAAGTGATTACTAGTGCAGTAAAGGCTGTTGAGAGGCATTCCAAAACCTTTGCCCATCGTGAAAGAAAGACGTTACCTGATATACTCAATTGGTTTGGGTGGTGTACATGGGACGCATTTTACACAGATGTCTCAGCCGAGGGTGTAAAACAAGGTTTAGAAAGTCTAGAGAAAGGGGGCACCCCTCCAAAGTTTCTGATTCTTGATGATGGCTGGCAATCTGTTGAAATGGACCCTAATGCAAAGCCTTCTCCAGTTGGCAATACAGCAAATTTTGCAAATCGGCTGACACATATAAAAGAGAATTATAAGTTTCAAAAAGATGGAAAGACTGGTCAGAGACAAGAGGATCCTGCTTTGGGCCTCAGACACATTGTTTCAGAAGCAAAGAAGACCCACAATTTAAAGTACATCTATGTTTGGCATGCTATCACTGGTTACTGGGGAGGAGTTAAGCCTGATGTTTCTGGAATGGAGCATTATAATTCAAAAATGTCCTTCCCTGTTGAACCTCATGGGATTCTTCATCACCAACCAGACGAGGCATTAGAATGCATAAAACTAAATGGATTGGGCTTAGTCCATCCCAAAAATGTGTTTCAATTTTATGACGATCTCCACTCGTATCTAGCAAGTGCTGGCATTAATGGTGTCAAAGTGGACGTCCAGAATATTATTGAGACGTTAGGTGCAGGGCATGGTGGTCGTGTTAAATTGGCCAGCCAGTATCATCAAGCAATGGAGGCTTCTATTGCTCGAAATTTCCCTGATAATGGGATAATTGCTTGTATGAGTCATAACACTGATGGTCTTTACAGTTCGAAACAGACTGCCGTTATAAGAGCCTCCGATGATTTCTGGCCAAGGGATCCTGCATCACATACCATTCATATTGCTTCTGTAGCCTACAACAGCGTTTTCTTGGGAGAGTTTATGCAGCCTGATTGGGATATGTTCCATAGTCTTCATCCAATGGGTGAATACCATGCCGCTGCTCGAGCTGTTGGGGGGTGCTCAATTTATGTCAGTGACAAACCTGGTGAACATGATTTTGACTTGTTGAAGAAGATCGTTCTTCCAGATGGATCCTTATTACGAGCACAGCTTCCAGGAAGGCCTACAAAAGATTGCTTGTTTACTGATCCAGCTCGTGATGGGACAAACCTCCTAAAACTTTGGAACTTGAACAAGCATACTGGAGTTATCGGTGTCTTCAACTGTCAAGGTGCCGGGTGGTGCAGGGTTGACAAAAAGAATCTGGTTCACGATTCCCAACCCAAAGCTATTACTGGTGCCATTCGCTCAATGGATGTAGATTATTTACCAAAAGTTGCAGATGAAAATTGGGACGGTGATTCCGTTGTATACTCTCACAGAGGGGGAGAGCTTGTCTGTCTTCCTAAAGGTGCAGCTTTACCGATTACTCTCAAAGCACGGGAGTATGAAGTTTTCACAGTTGTTCCTCTAAAGGGGTTAGCCAACGGCATCTCTTTTGCTCCCATTGGACTGATCAAAATGTTCAACTCCGGAGGAGCTATTAGTGCATATGAGTTCGATCCAAACACTTCAACAGTGTATTTGAAGGTTCGAGGTTGCGGGGATTTCGGAGCATATTGTTCTGTGAGGCCACAAGCCGTGTACGTGGATTCTACCCAGATAGGATTCAGCTATGAAGAAGAATGTGGTCTGACAACTTTCACATTGAGTGTGCCAGAAACAGAATTATATTTATGGGACATCAGAATTGACATATAA___ATGTTTTAACCAGTTTAGATTTAGGTGCTCTGCATAGTTCCCGCTTGCTAAAGATGTTTACCGGTCTGAATGCAAGAACCATGATGCCCCCAATTTTACAAGAAGGAAAGCAGTGTTAGTGTTATTTGTGTAGTTGGTTATCTTAGAGCACTAAATTTAAAGACTAGCGTTGTGACTTGTCATGTATATTATCTTCAGTTCCTCGTAATCTCAATTAGGATTGCCGGGCCATTTGGTAGTTCCAGAAAATTCTTTTTGTCATGTCTGGCATGTGTTGGGCTTCATTTTAATGCTGCTTGATGTGGTTCTCATGTGGAGCATTTTGTGGTCGAGTTTCCTGTGTCACATATATAGGTGCATCATATATTCAGATTTTTTTGTTATGGGTGAACATATATTCGGATTTTTATGATATGGGTGCATCTTATATTACGGAAATTTTT

Fln Alignment:

Contig26601___MEASIARNFPDNGIIACMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMGEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVIGVFNCQGAGWCRVDKKNLVHDSQPKAITGAIRSMDVDYLPKVADENWDGDSVVYSHRGGELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKVRGCGDFGAYCSVRPQAVYVDSTQIGFSYEEECGLTTFTLSVPETELYLWDIRIDI
D5AEI9_______________MEASIARNFPDNGIISCMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVLGVFNCQGAGWCRVDKKNLIHDSQPKTISGAIRSMDVDYLPEIADENWDGDSIVYSHRGGELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAISAYWFYQNTSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2738	90			10	0.90298
2745	10		90		0.90298
2794	76	15		7	0.999983
2804		83		16	0.999991
2896			80	20	0.995493
2915		60		40	1.0
2916		60	40		1.0
2917	60	40			1.0
2918	40		40	20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain