SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26584

Length: 372 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene26584
TGACCTTGGCTGTCACTCACTTCTGGACAAGGGCTGGCACTATTTTGATTGCATGACCAAAGCTTATCTTATCAATCCCAAAGTGGAGCACTATGCGTGCATGGTTGATCTTCTGGGCCGAACAGGGCATCTTGTCGAGGCACGGGACTTCATAAAACAGATGCCATTAGAGCCCAGTGCTAGCGTGTGGGGCACCTTGTTTGATGCTTGCAGATTTCGTGACAATGTTGAGATAGGACAGCACGTGGCTGAACACCTTTTTGAACTAGAGCCTGAAAATGCCAAATGCTCTATATTACTCTCAAACATCTATGCTAGGGCTGGCAGGTGGGAGGATTTAGCAAAGGTGATAACAATGATAGAAAGGTATAG

Ace file of the UniGene sp_v2.0_unigene26584

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	pentatricopeptide repeat-containing	-	-	2.14399e-43	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 139 aas, your sequence is shorter than subject: 123 - 312

Fln protein: DLGCHSLLDKGWHYFDCMTKAYLINPKVEHYACMVDLLGRTGHLVEARDFIKQMPLEPSASVWGTLFDACRFRDNVEIGQHVAEHLFELEPENAKCSILLSNIYARAGRWEDLAKVITMIERY

Protein Length: 124

Fln nts: TGACCTTGGCTGTCACTCACTTCTGGACAAGGGCTGGCACTATTTTGATTGCATGACCAAAGCTTATCTTATCAATCCCAAAGTGGAGCACTATGCGTGCATGGTTGATCTTCTGGGCCGAACAGGGCATCTTGTCGAGGCACGGGACTTCATAAAACAGATGCCATTAGAGCCCAGTGCTAGCGTGTGGGGCACCTTGTTTGATGCTTGCAGATTTCGTGACAATGTTGAGATAGGACAGCACGTGGCTGAACACCTTTTTGAACTAGAGCCTGAAAATGCCAAATGCTCTATATTACTCTCAAACATCTATGCTAGGGCTGGCAGGTGGGAGGATTTAGCAAAGGTGATAACAATGATAGAAAGGTATAG

Fln Alignment:

Contig26584___LLDKGWHYFDCMTKAYLINPKVEHYACMVDLLGRTGHLVEARDFIKQMPLEPSASVWGTLFDACRFRDNVEIGQHVAEHLFELEPENAKCSILLSNIYARAGRWEDLAKVITMIE
D5ADG9_______________LVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
215	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain