SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26470

Length: 1415 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26470 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Sorghum bicolor RepID=C5XGM7_SORBI	-	-	2.0e-28	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	ubiquitin-conjugating enzyme x	-	-	1.00646e-32	71%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3		IPR015582	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Q7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 34 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 103 - 182

Fln protein: MDAPPGLCAFPVKSCMLLWVGTIEGGPGTRYEGLTYRISISFPDEYPFDPPTVKFTTPCFHPNVHPEGNICLNILQDDWLPANDVRTLLLSIQRLLSGVTAQ*

Protein Length: 104

Fln nts: ATGGGGGAACTTATTTATTGCTGTATCAAGAAATTCAGGGTAAAATGATTAATGCCTATTAAAGCAAGTACAGAGTACAGACAACGATGGCGCCAAACCGCAATGGATTTACATATAACTGTAATCGTTCATGTTTTATGAACTTATTTATTGCTGTATCAAGAAATTCAGGGTACTGGGTATTGAACACTAGAGGCTTGCAATATATTTTCATAATCTGAAGCAGGGTATGAACCCTGGCCAGAAAAATAACATCCAGAAGGGCTCGTAGAGCAGAAGCTCATGCCATGGCGAAAGAGGTTGTCATGAAAAG_-_ATGGACGCACCGCCTGGGCTGTGTGCATTCCCTGTGAAGAGCTGCATGCTTCTGTGGGTGGGCACAATCGAAGGAGGCCCTGGCACGCGATACGAGGGATTAACCTACAGGATATCAATTTCTTTCCCAGACGAATATCCTTTCGATCCTCCAACTGTCAAGTTCACCACGCCGTGTTTTCATCCCAACGTACACCCCGAGGGCAACATCTGCCTCAACATTCTTCAGGACGATTGGTTGCCTGCCAATGATGTTCGCACCCTGCTGCTTTCCATACAACGCTTGTTGTCAGGTGTAACTGCCCAATAATCAGTTCCCTGGGTTGGAATTGATATTTATTAATGCTCTCGTGATCATTTGATCGATACCCATGTTTGTAACTACGGATCCAAATCTCGCCAGTCCCCTGGATCCTGCTGCAGCAGCACTCTGGACAGAAACTCATCATGTTTACAGTTTGATTCATGGTGTATTTCCGTGGTCGTATTGAATGTCCTCGACTCGTCCTTGCTGGGCAATTGCGTGGTCTGCTTTGGTTGCCGCCTCGTTCTCCAGTCGGACCACAGCATGCCAGGCGCATCTCCTTCCCGAGGTATGCCTCATGACTGGCGGTCTTTCGAGGACGCTATCAAAAACAAGCTTCCTAATAGAGTTTTCATACCTCTTGTTCCATGTTGGTGTTTCGAGTCCTTATTCCAATTGAAAGAATGGAAGAGTTTAATGTTTTTCTCTTTGACAAAGATAATTAGGGTTTGAGCTTGAGATTATTAAGGGTTTGCGGCCTTGAGTGAACACTCGCCCAACCCTTGTCAAAGGTATCCATCTAGTTTGACCGTTATTGCTACTGTATTTTTATGATTACTGTGTCTAGTTAAGAGCCGGTTTACCATGTCTGCACTTTGTAAATATATATAAAGCTACTCACTGAGAGTTTATTTTATTGTTCTTTTATGGTTAGACATAGTAAGGGTCTAAAATTTCGTTTCAGTGTTATTACAGTGAGCCCTACCAGCCTCGGTCCCTTCCTTAGGAATGCGATGAGAATTCAATTTTGGGTACTATTTATTAGAGTTTCATTTACATATATGTATAAAATCTCAGA

Fln Alignment:

Contig26470___MDAPPGLCAFPVKSCMLLWVGTIEGGPGTRYEGLTYRISISFPDEYPFDPPTVKFTTPCFHPNVHPEGNICLNILQDDWLPANDVRTLLLSIQRLL
D5A9Q7_______________MSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1070		25		75	0.996473
1096			75	25	0.996473
1128	33		66		0.997452
1247	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain