SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26465

Length: 1992 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene26465
ATTCTCTGTAGTGCTCTCTGCCTACGTGATGCATGAAAACATTTATTGTCATTGTTAGCAGCTGGGCACATATTGTTATCATTTTCTGTTAATGCCCTCTGCCATCCCTGACTCAAAAAAGTGGTATATTGCCATAGTTGGGCACCCGGGCACGACTTCCCGGCATTGTTTGTGACATTCGGTTTCTCCGCCCGAGGGAGAATTCACAATCCGAGCTGCGAAGATGGGATGGTTACGCCTATTGTTCTTGTGGATTGGGTGCCTTCACTGCATCTCTCAGAAGGTTTGCTCCGCCCCCATTCCTAGCACATTAGACGGGCCATTCACTCCCGTCACGGTGTCGCTCGACCCGAATCTTCGTCTGGGAAGCGATGATCTCCCCCCTTATCATCCTCGTCTCGTCAAACGAGTCCCCTCTGTTTTCCCAGAGCAGATCAAGCTCGCACTCTCCACGCACGATGCCATGTGGGTTTCCTGGATAACAGGGGACGCTCAAATTGGACCCAAAGTGGTTCCGCTGGATCCTTCGTCTGTGGGGTCCGAGGTTTTTTATGGCACCCAGACTGGTAATTATACCTTCACTTCCAAAGGGAAGTCCCTAGTCTACAGCCAGATATATCCATACGCAGGCCTTCTCAACTACACCTCTGGAATTATTCATCGGGTGCGTCTTACTGGGCTTCTTCCTAACACAAAATACTACTACAGATGTGGAGACCAAACCTTATCTTCCATAAGTGAAGAGCACGAGTTTGTCACACCACCATCTCCAGGCCCAAATAGCTATCTTACTCGAATAGCAGTTATTGGTGATTTGGGCCTCACATACAATTCATCTAGCACATATGATCATCTTGTTGAAAATGATCCCAGCATGATTCTTATGGTTGGAGATCTGGTCTATGCAAACAACTACCGAACCACAGGCGACAAAGGAGTACCATGCTATGAATGTGACTTTCCAGACACTCCTATCAGAGAGACATACCAACCTCGCTGGGATGCATGGGGCAGATTTATGGAGCCATTGTTGTCACGCATACCAATGATGGTTCTAGGAGGAAATCATGATATAGAACCTCAAGTGGGAGACCTCACATTTGCATCATATAGCGCCCGGTTTGCAGTTCCCTCTGAAGAGTCTGGATCCAACAATAGCCTGTATTATTCCTTCAATGTTGGAGGGGTACACTTTCTCATGCTTGCAGCTTATATAGATTTCAATAGATCCAGTGAACAATATGCTTGGCTCAAGCAAGATCTTGAAAATGTAAACCGTGAACTGACTCCTTGGTTGATTGCATCATGGCATCCTCCTTGGTATAATAGTTACACTAACCATTATCAAGAATTTGAGTGTATGAGACAACAAATGGAAGACATCCTATACGAATATGGTGTAGACTTGGTGTTCAATGGCCATGTACATGCATATGAGAGGATGAACAGAGTTTATAACTATGTCCTAAACCCATGTGGTCCAGTGTATATCACAGTGGGAGATGGTGGAAACATTGAGAAACTTGCAACAAGGCATGCAGACGAACCTGGAAATTGTCCAAAAAAAATACATAACCACGACTTTGGAGGGGTTTGCCCTTTTAATTACACCTCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCTACCTGTGAAAAATAAGGGGAGAAATCTCCTTTGTTGAAAGCAAACGTAAGCAGTGACAAATACTCAGAACACCCTAGTCTCAGCTTTACGGATGAAAAGGATCTATCTCTGAGAACATCTAGCTATCCTTGCCATAAGCAAAATATTTGCGTAAATATTGTTATGTGATTTG

Ace file of the UniGene sp_v2.0_unigene26465

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallophos multi-domain protein	-	-	4.0e-21	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA01

Fln msg: your sequence is longer than subject: 535 - 423

Fln protein: MGWLRLLFLWIGCLHCISQKVCSAPIPSTLDGPFTPVTVSLDPNLRLGSDDLPPYHPRLVKRVPSVFPEQIKLALSTHDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIEPQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHADEPGNCPKKIHNHDFGGVCPFNYTSGPAKGKLCWDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYIVRQPEICAHMTAYL*

Protein Length: 536

Fln nts: ATTCTCTGTAGTGCTCTCTGCCTACGTGATGCATGAAAACATTTATTGTCATTGTTAGCAGCTGGGCACATATTGTTATCATTTTCTGTTAATGCCCTCTGCCATCCCTGACTCAAAAAAGTGGTATATTGCCATAGTTGGGCACCCGGGCACGACTTCCCGGCATTGTTTGTGACATTCGGTTTCTCCGCCCGAGGGAGAATTCACAATCCGAGCTGCGAAG_-_ATGGGATGGTTACGCCTATTGTTCTTGTGGATTGGGTGCCTTCACTGCATCTCTCAGAAGGTTTGCTCCGCCCCCATTCCTAGCACATTAGACGGGCCATTCACTCCCGTCACGGTGTCGCTCGACCCGAATCTTCGTCTGGGAAGCGATGATCTCCCCCCTTATCATCCTCGTCTCGTCAAACGAGTCCCCTCTGTTTTCCCAGAGCAGATCAAGCTCGCACTCTCCACGCACGATGCCATGTGGGTTTCCTGGATAACAGGGGACGCTCAAATTGGACCCAAAGTGGTTCCGCTGGATCCTTCGTCTGTGGGGTCCGAGGTTTTTTATGGCACCCAGACTGGTAATTATACCTTCACTTCCAAAGGGAAGTCCCTAGTCTACAGCCAGATATATCCATACGCAGGCCTTCTCAACTACACCTCTGGAATTATTCATCGGGTGCGTCTTACTGGGCTTCTTCCTAACACAAAATACTACTACAGATGTGGAGACCAAACCTTATCTTCCATAAGTGAAGAGCACGAGTTTGTCACACCACCATCTCCAGGCCCAAATAGCTATCTTACTCGAATAGCAGTTATTGGTGATTTGGGCCTCACATACAATTCATCTAGCACATATGATCATCTTGTTGAAAATGATCCCAGCATGATTCTTATGGTTGGAGATCTGGTCTATGCAAACAACTACCGAACCACAGGCGACAAAGGAGTACCATGCTATGAATGTGACTTTCCAGACACTCCTATCAGAGAGACATACCAACCTCGCTGGGATGCATGGGGCAGATTTATGGAGCCATTGTTGTCACGCATACCAATGATGGTTCTAGGAGGAAATCATGATATAGAACCTCAAGTGGGAGACCTCACATTTGCATCATATAGCGCCCGGTTTGCAGTTCCCTCTGAAGAGTCTGGATCCAACAATAGCCTGTATTATTCCTTCAATGTTGGAGGGGTACACTTTCTCATGCTTGCAGCTTATATAGATTTCAATAGATCCAGTGAACAATATGCTTGGCTCAAGCAAGATCTTGAAAATGTAAACCGTGAACTGACTCCTTGGTTGATTGCATCATGGCATCCTCCTTGGTATAATAGTTACACTAACCATTATCAAGAATTTGAGTGTATGAGACAACAAATGGAAGACATCCTATACGAATATGGTGTAGACTTGGTGTTCAATGGCCATGTACATGCATATGAGAGGATGAACAGAGTTTATAACTATGTCCTAAACCCATGTGGTCCAGTGTATATCACAGTGGGAGATGGTGGAAACATTGAGAAACTTGCAACAAGGCATGCAGACGAACCTGGAAATTGTCCAAAAAAAATACATAACCACGACTTTGGAGGGGTTTGCCCTTTTAATTACACCTCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCTACCTGTGA___AAAATAAGGGGAGAAATCTCCTTTGTTGAAAGCAAACGTAAGCAGTGACAAATACTCAGAACACCCTAGTCTCAGCTTTACGGATGAAAAGGATCTATCTCTGAGAACATCTAGCTATCCTTGCCATAAGCAAAATATTTGCGTAAATATTGTTATGTGATTTG

Fln Alignment:

Contig26465___PEQIKLALSTHDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIE--PQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHADEPGNCPKKIHNHDFGGVCPFNYTSGPAKGKLCWDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYI
D5AA01_______________PQQVHVSLIGENQMRITWITNDANV-PSVVE-----------YGTSPGVYNFSAKGENTSYTY-------LGYRSGQIHYVTLGPLEANTIYYYRCG-----TYGPEYSVKTPRSEFPITF----AIVGDLGQTGRTNSTLQHIQQANYDVFLLPGDLSYA------------------------DTQQPLWDSFGMLVQPLASTRPWMVTEGDHEIERIPIVITTEFIAYNARWRMPFEESGSSSNLYYSFEVAGVHIVMLGSYAEYKQNSDQYEWLQADLSRVNKTRTPWIIVLFHVPWYNSNAAHQGEGNDMRAAMEPLLYAAKVDIAFAGHVHAYERFSRVYMNTVNPCGAVHITIGDGGNSQGL----------------DSDF------------------LDSQPQWSLFREASFGHGELTIYNATHAHWSWHRNDDDASTMADENWI

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
51	80		20		1.0
53		20		80	1.0
56			20	79	1.0
58		20	79		1.0
60	79		20		1.0
65		8	91		0.999766
66	8		79	12	1.0
68	91			8	0.999766
70	87			4	0.999414
73		8		91	0.999766
74	8			91	0.999766
165	93			6	0.999153
384		88		11	0.923564
386	11			88	0.923564
388	11			88	0.923564
391			12	87	0.992554
444		85		14	0.993533
445	85	14			0.993533
446		85	14		0.993533
448		85	14		0.993533
449	14			85	0.993533
452	85			14	0.993533
453		85		14	0.993533
455		85	14		0.993533
456	71	28			1.0
457		85		14	0.993533
459	85			14	0.993533
460		14		85	0.993533
461	14		85		0.993533
537			90	10	0.90298
542	11		88		0.923564
543	88	11			0.923564
544			88	11	0.923564
545		11	88		0.923564
546	12			87	0.992554
715	40			60	1.0
772	80		20		0.995493
1279	33		66		0.997452
1282	66		33		0.997452
1283	66		33		0.997452
1373	20		80		0.995493
1420	25		75		0.996473
1451	25		75		0.996473
1476		25		75	1.0
1479		25	75		1.0
1482	25	75			1.0
1484	75	25			1.0
1485			75	25	1.0
1488			25	75	1.0
1489	75	25			1.0
1491	75		25		1.0
1496	87			12	0.992554
1497		12	87		0.992554
1533	90			10	0.90298
1542		11	88		0.923564
1543	88			11	0.923564
1566	87	12			0.992554
1984	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain