SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26416

Length: 2029 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene26416
AATCTACAGGTTTACCAGACAACGAATGGGAGTAATAAAACTGTATCTCTGGTCACGAAATAGGCTCATATTGGCTTTTCTACGGGCAAAGTCAATCCAGCTTGAATAGATATCTGAGGCAACCTGCTCCTCCAGCTCGACGATCGTTTGGAAGACCTGTCATCGGGAGCGCTTTACAGATCTCTATCATAAGGTGCAGAATGATTGCAGCAGTGTGTTGGGTTCCTAAGGGTGTTGCAAAGGTTCTACCAGATTCTGCTGAACCGCCTACTCAAGAGGAGATTCAAGAGTTATTGAAGTGTAACGTTGTAGCAGAGAGTGACGATAATGAAGATAGTGATGAAGAAAATGAAGAGATGGATACTGAAACTGATAAAAATACCGACGCAGTGGCAAAGGCATTAGCAGCAGCAGATGCTCTTGGGAATCAGTCTGCAGATTTTCAAAGGCAGCACAAGGTTGATGATATTGCTAATGGCCTCAAAGAACTTGACATGGATCATTATGATGACGAGGATGAAGGCATTGACATTTTTGGCAGTGGTTCTCTTGGTAATTGTTACTACCCAGCCAATGACATGGACCCTTATATTGTAGAACAAGATGATGATGATGAAGATGAAATCGAAGACATGAGAATTAAACCTTCTGACTTGATTATCTTATCAGCTCGCAATGAAGACGATGTTAGCCATCTTGAGGTCTGGATATATGAAGAAGAAACTGAAGAGGGTGGTTCCAATATGTATGTTCATCATGATATCATCTTGCCAGCCTTTCCACTTTCTCTTGCTTGGCTTGATTGTAATCTGAAAGGTGGAGAAAAAGGAAATTTTGTTGCTGTTGGAACAATGCAACCTGAAATTGAGCTCTGGGACCTTGATGTGCTTGATGAGGTTGAACCTGCTGTAGTCCTGGGTGGTGCTGTTAAAGATGAAGCATCTGGTAAGACGACCAAACTGAAGAAAAAGAAGAAAAATAAACAGGCTGTCAATTTTAAAGAGGGAAGCCATACAGATGCAGTTCTTGGTTTGGCATGGAATATGGAGTACAGGAATGTCTTGGCTAGTGCAAGTGCTGACAAATCTGTAAAGATCTGGGATATTGTTGCTGAGAAATGTGAGCACACAATGCAACCTCACACAGATAAGGTTCAAGCAGTAGCCTGGAATCCTAATCAGGCAACAGTTCTTCTCAGTGGATCTTTTGATCGTTCTGTGATCATGATGGACATGAGGGCTCCCACACACTCAGGGATACGGTGGCCAGTTCCAGCAGATGTAGAAAGCCTTGCATGGGATCCTCATACTGATCACTCATTTATGGTTAGCGCTGAAGATGGCACTGTTCGAGGTTTTGATATTCGTGCAGCAGCATCTACTGCAGATTTTGATGGCAAGCCAATGTTCACACTTCATGCACATGACAAGGCTGTCTGTGCAATTTCGTACAACCCTGCTGCCCCAAGTTTACTCGCAACAGGATCAACAGATAAGATGGTAAAGTTGTGGGACATAACAAATAATCAGCCTTCATGCATTGCCTCAACAAATCCAAATGTTGGAGCTGTGTTTTCTGCAGCTTTTTCAAAAGACAGTCCGTTCTTACTTGCTACTGGAGGCTCAAAGGGAATTTTGCATGTTTGGGATACCCTAGATAATTCTGAAGTCGCGAGAAGATTTGGAAAGTTCAGACCACAGAATTGAACTTTCATATTTCTATTCAGTTTTGTTCGAAGAATAATATCGAGAAAATTTATTTACATATTCTCCAGAGGTGGGATTGTGTATTATAATGTGTTAATACTTGGTCATTTATTTGCGGCTTTTGTTGGCACATTGCTAAATTTCTACGAGCCTTCAGGGACAGGTGTCTAACTGTCCCATCAGTAACATTTCTCGAAGTTTTGCTAAAAGTTAATGTTCTCATAGGTCATTCATTGGAGTTGTCTCGTATGTACGCTGTGCTGTAGTAAAATTCTTTCACGCTTCATTTTGAGTATTTAATGCTGAGTATTTTAAGTTTTTTT

Ace file of the UniGene sp_v2.0_unigene26416 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAK92820.1\| unknown protein [Arabidopsis thaliana] gb\|AAL08286.1\| AT4g18900/F13C5_70 [Arabidopsis thaliana] gb\|AAM44990.1\| unknown protein [Arabidopsis thaliana] gb\|AEE84104.1\| transducin	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	transducin wd40 domain-containing protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU52

Fln msg:

Fln protein: MLLGISLQIFKGSTRLMILLMASKNLTWIIMMTRMKALTFLAVVLLVIVTTQPMTWTLIL*

Protein Length: 62

Fln nts: AATCTACAGGTTTACCAGACAACGAATGGGAGTAATAAAACTGTATCTCTGGTCACGAAATAGGCTCATATTGGCTTTTCTACGGGCAAAGTCAATCCAGCTTGAATAGATATCTGAGGCAACCTGCTCCTCCAGCTCGACGATCGTTTGGAAGACCTGTCATCGGGAGCGCTTTACAGATCTCTATCATAAGGTGCAGAATGATTGCAGCAGTGTGTTGGGTTCCTAAGGGTGTTGCAAAGGTTCTACCAGATTCTGCTGAACCGCCTACTCAAGAGGAGATTCAAGAGTTATTGAAGTGTAACGTTGTAGCAGAGAGTGACGATAATGAAGATAGTGATGAAGAAAATGAAGAGATGGATACTGAAACTGATAAAAATACCGACGCAGTGGCAAAGGCATTAGCAGCAGCAG_-_ATGCTCTTGGGAATCAGTCTGCAGATTTTCAAAGGCAGCACAAGGTTGATGATATTGCTAATGGCCTCAAAGAACTTGACATGGATCATTATGATGACGAGGATGAAGGCATTGACATTTTTGGCAGTGGTTCTCTTGGTAATTGTTACTACCCAGCCAATGACATGGACCCTTATATTGTAG___AACAAGATGATGATGATGAAGATGAAATCGAAGACATGAGAATTAAACCTTCTGACTTGATTATCTTATCAGCTCGCAATGAAGACGATGTTAGCCATCTTGAGGTCTGGATATATGAAGAAGAAACTGAAGAGGGTGGTTCCAATATGTATGTTCATCATGATATCATCTTGCCAGCCTTTCCACTTTCTCTTGCTTGGCTTGATTGTAATCTGAAAGGTGGAGAAAAAGGAAATTTTGTTGCTGTTGGAACAATGCAACCTGAAATTGAGCTCTGGGACCTTGATGTGCTTGATGAGGTTGAACCTGCTGTAGTCCTGGGTGGTGCTGTTAAAGATGAAGCATCTGGTAAGACGACCAAACTGAAGAAAAAGAAGAAAAATAAACAGGCTGTCAATTTTAAAGAGGGAAGCCATACAGATGCAGTTCTTGGTTTGGCATGGAATATGGAGTACAGGAATGTCTTGGCTAGTGCAAGTGCTGACAAATCTGTAAAGATCTGGGATATTGTTGCTGAGAAATGTGAGCACACAATGCAACCTCACACAGATAAGGTTCAAGCAGTAGCCTGGAATCCTAATCAGGCAACAGTTCTTCTCAGTGGATCTTTTGATCGTTCTGTGATCATGATGGACATGAGGGCTCCCACACACTCAGGGATACGGTGGCCAGTTCCAGCAGATGTAGAAAGCCTTGCATGGGATCCTCATACTGATCACTCATTTATGGTTAGCGCTGAAGATGGCACTGTTCGAGGTTTTGATATTCGTGCAGCAGCATCTACTGCAGATTTTGATGGCAAGCCAATGTTCACACTTCATGCACATGACAAGGCTGTCTGTGCAATTTCGTACAACCCTGCTGCCCCAAGTTTACTCGCAACAGGATCAACAGATAAGATGGTAAAGTTGTGGGACATAACAAATAATCAGCCTTCATGCATTGCCTCAACAAATCCAAATGTTGGAGCTGTGTTTTCTGCAGCTTTTTCAAAAGACAGTCCGTTCTTACTTGCTACTGGAGGCTCAAAGGGAATTTTGCATGTTTGGGATACCCTAGATAATTCTGAAGTCGCGAGAAGATTTGGAAAGTTCAGACCACAGAATTGAACTTTCATATTTCTATTCAGTTTTGTTCGAAGAATAATATCGAGAAAATTTATTTACATATTCTCCAGAGGTGGGATTGTGTATTATAATGTGTTAATACTTGGTCATTTATTTGCGGCTTTTGTTGGCACATTGCTAAATTTCTACGAGCCTTCAGGGACAGGTGTCTAACTGTCCCATCAGTAACATTTCTCGAAGTTTTGCTAAAAGTTAATGTTCTCATAGGTCATTCATTGGAGTTGTCTCGTATGTACGCTGTGCTGTAGTAAAATTCTTTCACGCTTCATTTTGAGTATTTAATGCTGAGTATTTTAAGTTTTTTT

Fln Alignment:

Contig26416___MLLGISLQIFKGSTRLMILLMASKNLTWIIMMTRMKALTFLAVVLLVIVTTQPMTWTLIL
A9NU52_______________MLLGINLQISKGSPRLMILLTASKNLTWIIMMTRMKALIFLEVVLLVVVTTQPMTWTLIL

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
755	16		83		0.994512
758			83	16	0.994512
893		10	90		0.90298
958		40		60	1.0
998	90			10	0.90298
999	90		10		0.90298
1001		90	10		0.90298
1002		90		10	0.90298
1003	90		10		0.90298
1005		10	90		0.90298
1008	90		10		0.90298
1010		10		90	0.90298
1011	10		90		0.90298
1012	10	90			0.90298
1013	90		10		0.90298
1016	10			90	0.90298
1017		10	90		0.90298
1018			10	90	0.90298
1020		10		90	0.90298
1042		77	22		0.999999
1043	77			22	0.999999
1045	22	77			0.999999
1047	33			66	1.0
1049		22	11	66	0.999999
1050		22		77	0.999999
1051	22	11		66	0.999999
1053		12	25	62	1.0
1054			37	12	1.0
1055	12			87	0.992554
1056		37	50	12	1.0
1057	75		12	12	0.975346
1058		42	57		1.0
1060			85	14	0.993533
1061	85	14			0.993533
1062		85		14	0.993533
1063	42		28	28	1.0
1064			60	40	1.0
1067		80		20	0.995493
1069	50			50	1.0
1070	50	16		33	1.0
1071		16	66	16	0.988813
1072	16	16			0.988813
1075		50		50	1.0
1076	50			50	1.0
1077		50	50		1.0
1079	50			50	1.0
1457		87	12		0.992554
1459			12	87	0.992554
1462	12		87		0.992554
1464	12			87	0.992554
1466		12	87		0.992554
1467		12	87		0.992554
1468	12			87	0.992554
1472	87	12			0.992554
1475	87		12		0.992554
1477		12		87	0.992554
1478			12	87	0.992554
1485	85			14	0.993533
1488	83		16		0.994512
1489		83		16	0.994512
1490		83	16		0.994512
1493	16			83	0.994512
1500	83		16		0.994512
1501	83		16		0.994512
1503		16	83		0.994512
1504	16			83	0.994512
1506	83		16		0.994512
1508		16		83	0.994512
1645		10	90		0.90298
1647	10		90		0.90298
1821		11		88	0.923564
1822		11	88		0.923564
1823	11	88			0.923564
1833	14			85	0.993533
1836			85	14	0.993533
1878		14		85	0.993533
1880	14			85	0.993533
1881	14			85	0.993533
1882		85	14		0.993533
1883		85	14		0.993533
1884	85			14	0.993533
1885	85	14			0.993533
1912		16		83	0.994512
1968		40	60		1.0
1973		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1414	1427	TCA TCA TCA TCA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain