SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26279

Length: 1613 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26279

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAL15341.1\| At2g47630/F17A22.2 [Arabidopsis thaliana] gb\|AAM14848.1\| putative phospholipase [Arabidopsis thaliana] gb\|AAC63619.2\| putative phospholipase [Arabidopsis thaliana] gb\|AAM	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	74%
Blast2go	esterase lipase thioesterase family protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U297

Fln msg:

Fln protein: MEVYKYEEEFIRNSRGVRLFTCRWLPLLTAPKGLVFLCHGYGMECSVFMRECGIRLARAGYGVFGIDYEGHGKSKGPRCYIKRFSNIVNDCNNFFKSICVRKEYEEMPRFLYGESMGGAVVLLLHRKEPTFWNGAVLVAPMCKISEKIKPHPVVVKFLIKLAVFIPTWKIVPTKDVIDSAFRDPIKREQVRSNELIYQDKPRLKTALEMLKVSLDLEDRLQEVTVPFLVLHGEDDSVTDPSVSEALYNGAASFDKTIKLYPGMWHALTSGEPDHNVDLVFADIISWLDRRLHTRTPLLTRNDQEEKTFLTNQSRVVPIICGGGGGRPETLGTRRDADKPDTNFLRSSL*

Protein Length: 350

Fln nts: GTGTTCCAAGGTGTTTTTATGCACGACTCCTATGGCATTTTTTTTGACACATTGTTAATTGGATTATGCGAGATTTTTTGGTATTGGGATAGGAGCAATCCATATTATCCTTTCGTTTCTGAACCATTTATAAAAACCCATTGGTGGAATCTGATAAATGCGGCTCCGGTGGCCCCTGGTCTCTGGTTTTGGCTGGGAAAATTCTTGTTTCGGTGGGGTTTTAGCCATTGATTAGCAGCG_-_ATGGAGGTCTACAAGTATGAAGAGGAATTCATTCGTAATTCTAGAGGAGTGCGATTATTTACCTGTAGGTGGCTGCCTCTGTTGACAGCTCCAAAGGGTCTGGTTTTCCTATGCCACGGGTATGGAATGGAATGCAGTGTTTTCATGAGAGAATGTGGAATAAGGCTTGCCCGTGCTGGATATGGCGTGTTCGGAATCGATTACGAGGGCCATGGGAAATCAAAAGGCCCCAGATGTTATATTAAGAGATTTAGCAATATTGTCAATGACTGTAACAATTTCTTCAAGAGTATCTGTGTTCGTAAAGAGTATGAAGAAATGCCCAGATTCCTGTATGGAGAATCCATGGGCGGTGCAGTTGTGCTTCTGCTGCACAGAAAGGAACCTACGTTTTGGAATGGAGCTGTTCTTGTAGCTCCCATGTGCAAGATATCAGAGAAGATAAAACCACATCCTGTGGTGGTCAAGTTTCTAATAAAACTAGCAGTATTTATTCCCACATGGAAGATAGTCCCCACCAAGGACGTCATAGATTCGGCCTTCCGGGATCCCATCAAGAGAGAACAGGTTCGATCCAACGAGCTTATATATCAAGACAAGCCCCGATTAAAAACAGCTCTGGAAATGCTCAAAGTGAGCCTGGACTTGGAGGACCGGCTTCAGGAGGTGACGGTACCGTTCTTGGTATTGCATGGAGAGGACGACAGCGTGACAGACCCTTCGGTGAGCGAGGCGCTGTACAATGGGGCAGCTAGCTTTGACAAGACCATCAAACTCTATCCGGGCATGTGGCACGCCCTCACCAGCGGGGAACCCGATCACAACGTGGATTTGGTCTTTGCAGATATCATCTCCTGGCTCGATCGCAGGCTCCACACTCGCACTCCATTGCTCACACGCAACGACCAAGAAGAGAAAACATTTTTAACCAATCAATCTCGCGTTGTCCCCATTATTTGCGGTGGCGGCGGCGGGCGGCCAGAGACCCTCGGCACCCGTCGCGATGCAGATAAACCCGACACCAATTTTCTCCGCTCATCGCTCTGA___TTATGAGAAAAACTTGAATCAAACCGCATCGCTACTGTAATTGTAACCGTAATGAGCCTCTTAGTCTTTTGGAATTGTGTGTATCAGTTCAGAAAGAAATACATAAATTTTGATGGATCTTCAGAAGATGTGGATTGGTTTACAATCAAGCAAAACTTCTTCCTACACAGTTTCTTTGTACAGCAAATTTTACCCACAATAAAACGATGATCATCTCTGAATTCCCCAGTTCGTGAAGTATCATCGTCTCTGAATTTTTTACCAGATTTTGCAAAGAAGACATGCTTAACATTGTAAGTGTAGCTCTAACTACATTTTACAATTCC

Fln Alignment:

Contig26279___MEVYKYEEEFIRNSRGVRLFTCRWLPLLTAPKGLVFLCHGYGMECSVFMRECGIRLARAGYGVFGIDYEGHGKSKGPRCYIKRFSNIVNDCNNFFKSICVRKEYEEMPRFLYGESMGGAVVLLLHRKEPTFWNGAVLVAPMCKISEKIKPHPVVVKFLIKLAVFIPTWKIVPTKDVIDSAFRDPIKREQVRSNELIYQDKPRLKTALEMLKVSLDLEDRLQEVTVPFLVLHGEDDSVTDPSVSEALYNGAASFDKTIKLYPGMWHALTSGEPDHNVDLVFADIISW
D7U297_______________MEV-EYQEEYIRNSRGVQLFTCRWLPF-SPPKALVFLCHGYGMECSSFMRGCGTRLASAGYAVIGIDYEGHGRSRGARCYIKKFNNIVSDCNDFFKSVCVQEEYRDKNRFLYGESMGGAVALLLHKKDPNFWNGAVLVAPMCKISEKVKPHPVVVNILTKVEEIIPKWKIVPTKDVIDSAFKDPVKREEIRNNKLIYQDKPRLKTALEMLRTSMSLEDSLHEVTLPFFVLHGEADTVTDPDVSRALYGQASSRDKTMKLYPGMWHGLTSGEPDENIEMVFSDIITW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1352		15		84	0.999986
1381	81	18			0.999994
1382	81			18	0.999994
1397	77			22	0.999999
1403			25	75	1.0
1428	13		86		0.999973
1475	36	63			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain