SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26178

Length: 1319 nt

Origin of reads: Inia v1 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26178 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tify multi-domain protein	-	-	6.0e-10	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	tify transcription factor	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P132

Fln msg: your sequence is shorter than subject: 267 - 286

Fln protein: MPSSASMALEFLGVQNASEANRTVLKGGSGLEISPEKHLPKLRFTQDLSRIKPQMMQKVFSGLSEYKKTDSAHVNCQTEGFNGRSEVSSRPEMLELFPVSTGSSFGSNPRVAENKITLPFAIGQNDQDSRSVPEKAPEQQSTPQLTIFYNGAMRVYDVPAEKAEAIMRLASANSSSSTITSEVSSGKIEQKSKPLPSKPASDAVTENQLHRRPVGLQIVRKLSLERFLQKRKERFNSVAPYTTMKPATLPSEAEKESEDQIILSLA*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTTGTTCGCCTCAGACTACGCAGAATTGTCTTCGCTTAGTAGGCGCTTTCATTGATCTCCATCTCCTGGAGTAGTACAGCTTCGAACAAAGGTAGATTGTAGAGGAAAATTTCGGGATTTATCAGACAAATTGAGTTTGCAAGCT_-_ATGCCTTCAAGTGCATCTATGGCTCTGGAGTTTCTAGGCGTTCAGAACGCCTCAGAAGCAAACAGAACAGTCCTGAAAGGCGGTAGTGGTTTAGAAATCAGCCCTGAAAAACATCTACCAAAGCTTAGATTCACGCAAGATCTGTCGCGGATAAAACCGCAGATGATGCAAAAAGTGTTTTCCGGGCTTTCAGAGTACAAGAAGACCGATTCCGCTCATGTCAATTGTCAGACCGAGGGCTTTAACGGAAGATCTGAGGTATCAAGCCGTCCGGAAATGTTGGAATTGTTTCCCGTAAGCACTGGTTCCAGTTTCGGTTCAAACCCTAGAGTCGCAGAAAATAAAATAACTTTGCCGTTTGCAATCGGCCAAAATGATCAGGATTCGAGATCTGTTCCAGAGAAAGCTCCGGAGCAGCAGTCCACTCCTCAACTCACTATCTTTTATAATGGAGCGATGAGAGTTTACGATGTGCCAGCTGAGAAGGCTGAAGCCATTATGAGGCTTGCCAGTGCTAATAGCTCGAGTAGCACAATAACATCTGAGGTTTCCAGTGGTAAAATCGAACAGAAATCGAAGCCGCTGCCTTCTAAGCCTGCATCGGACGCTGTCACTGAAAATCAGCTTCATAGACGGCCAGTAGGCCTGCAAATAGTCAGGAAATTGTCTCTGGAGCGCTTCCTCCAAAAGCGAAAAGAGAGATTCAACAGCGTGGCTCCTTACACCACGATGAAGCCGGCGACATTACCTTCTGAAGCAGAGAAGGAATCAGAGGACCAGATCATTCTCTCTTTAGCGTAA___TCACAAAATTTTAAAACATGCGTCAATGTTCTCGGCGTTTAACTGCACTGGGCGACAAATTCTTTTACTTTTAACCGGATTGCTCTTTCCAACTTTCTAACTGGCCGACGGAACCCACGTGTTTTGTGTATGGCCATTCACCGTGATAACCTAAAGTTATGGTGGTTAGTGGTCTTCATTCAGTGGACGTGGGTAATCGGGAACATGAAGCTGTAAAGCAATTTCTCAATTCGAGAGTATCCATGGTACAATTTGTTGTACATATTATATTTTTTTACAAATATATTATTATTGACCAATTTTATTTAGTATTGTAATGTTCATTGACATCATGCGATGGAAAA

Fln Alignment:

Contig26178___MPSSASMALEFLGVQNASEANRTVLKGGSGLEISPEKHLPKLRFTQDLSRIKPQMMQKVFS--GLSEYKKTDSAHVNCQTEGFNGRSEVSSRPEMLELFPVSTGSSFGSNPRVAENKITLPFAIGQNDQDSRS-VPEKAPEQQSTPQLTIFYNGAMRVYDVPAEKAEAIMRLAXXXXXXXXXXXXXXSGKIEQKSKPLPSKPASDAVTENQLHRRPVGLQIVRKLSLERFLQKRKERFNSVAPYTTMKPATLPSEAEKESEDQIILSLA-*SQNFKTCVNVL
A9P132_______________MSTSAAVASEFLRFQNASAANGTVANGSTSWTFVPQKQLAKPRFMQDLSRIKPQMMQKVLSSIGLSEDKNADFALVNRQAEDFNRHSEASSHREMLELFPISTGSGLGSNPRVTENKITLPFAIGQTDPDSSSSVPAKAPEQQSTAQLTIFYNGAMNVYDVSAEKAQAIMRLASANSSRKTRISTISSSKIEQVSKPLPSKPASNAANGNQPQTPPVGLEIAKKLSLQSFLRKRKERFNSVAPYTTMKPVTLPSKAEKESDDQIRLSLASSSQNFKMSVNAI

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
72	66		33		0.997452
163		25		75	0.996473
164	25		75		0.996473
263		83		16	0.994512
333	80		20		0.999996
348		83	16		0.999991
453		14		85	0.999981
533		2		97	0.979771
555	95		4		0.999984
616		94		5	0.999997
727		10		90	0.999898
826			83	16	0.994512
827	83		16		0.994512
829		83	16		0.994512
830		83		16	0.994512
833	83	16			0.994512
836			16	83	0.994512
837		16	83		0.994512
838		16	83		0.994512
841		83	16		0.994512
842		83	16		0.994512
843	66			33	1.0
844		16	83		0.994512
845	33			66	1.0
848		16		83	0.994512
849			33	66	1.0
852	16		66		0.988813
854		20	80		0.995493
855	80	20			0.995493
859	80		20		0.995493
860	80		20		0.995493
862		20		80	0.995493
863	20	80			0.995493
865	80		20		0.995493
869	40		20	40	1.0
871			50	50	1.0
872	25	25		50	1.0
873		50	50		1.0
874		25	25	50	1.0
876	50		50		1.0
877	50	50			1.0
878	25	50			1.0
880		50	50		1.0
882	50			50	1.0
883	50			50	1.0
885	40		60		1.0
886	20			80	0.995493
887	20	40		20	1.0
888	60	40			1.0
890		20	40	40	1.0
891	20	40		40	1.0
892	40	60			1.0
1012		33	66		0.997452
1014	33		66		0.997452
1016	33		66		0.997452
1017	66	33			0.997452
1219	16	83			0.994512
1233			80	20	0.995493
1239		80	20		0.995493
1243			20	80	0.995493
1244		20	80		0.995493
1245	80	20			0.995493
1251		80		20	0.995493
1256			20	80	0.995493
1258	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain