SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26175

Length: 1580 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26175 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monooxygenase, FAD-binding [Nostoc punctiforme PCC 73102] gb\|ACC80836.1\| monooxygenase, FAD-binding [Nostoc punctiforme PCC 73102]	-	-	2.0e-23	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	salicylate 1-monooxygenase	-	-	0.0	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	Monooxygenase, FAD-binding	IPR002938	-	0.0	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB0

Fln msg:

Fln protein: MDGLEGSISNAELEVAPQMDIVIAGGGLAGLALALGLQERHIQAHVFESHPVLSAATATVIGIGSNGITAMEGIKSGLTTAIAEAGAYTIKFRYKSYINGQEEISRTTRRSSGDWITVRWESVQRILASFLHKSSICFSHKLIGYKPFKGGVEAYFRYTADNIEKIKMIPCKLLIGADGIWSAVRKQMVGDPPRYLKLMNWNALVYDPDLKLFDDVERGDIIYRSDDNGRTRNIIANTGDYTMWLLRKRDETGDLANSLVEGKARRGASGCKSRVLKQLDEVVGWDDLRVAIEATNEEIIIERRMMDRLPINKWSDADGHVLLIGDAAHAQYTGPGQGARTAFEDAHQLSLLLEVANASYLSTEGIEEAVGRFEELRIPRMRKMQEYAAYQTMIPEFQPDWTKNLTTEERDRMNQEYIKWVGAYPDKQLG*

Protein Length: 432

Fln nts: CTCCAGCAGTAGTTATGCTCACTGACCATTCTCTCACAAAAAATATTTGTCAAATTCAACAGCATTGTCCGACCTGAACATCAAA_-_ATGGATGGTCTGGAAGGGTCTATCAGCAATGCCGAACTGGAGGTAGCACCACAAATGGACATCGTTATTGCGGGTGGTGGACTGGCGGGCCTTGCGCTGGCGCTGGGCCTTCAAGAACGACACATCCAAGCTCACGTGTTCGAATCCCACCCCGTTCTCAGCGCAGCCACAGCTACTGTAATAGGTATTGGCAGCAACGGTATCACTGCCATGGAAGGCATTAAGTCCGGGCTCACCACCGCAATAGCCGAAGCAGGCGCTTACACCATAAAATTCAGATATAAGTCCTACATTAATGGACAGGAAGAGATATCCAGAACCACAAGAAGGTCCTCTGGTGATTGGATCACTGTGCGATGGGAGTCCGTTCAGCGAATTCTTGCCAGCTTCCTTCATAAATCCTCAATTTGCTTCTCGCATAAACTAATAGGATACAAGCCATTCAAGGGTGGTGTTGAAGCCTATTTCAGATACACGGCTGATAACATAGAGAAGATCAAGATGATTCCTTGTAAGCTCTTAATTGGGGCAGATGGAATATGGTCTGCTGTGCGTAAACAGATGGTTGGCGACCCTCCCAGATATCTCAAATTAATGAATTGGAACGCGTTGGTGTACGACCCGGATCTCAAATTATTTGATGACGTTGAGAGAGGAGATATTATTTACCGCTCTGACGACAATGGGAGAACTAGGAATATCATAGCTAACACAGGAGATTATACCATGTGGTTACTCCGTAAAAGAGATGAAACAGGGGATCTGGCAAACTCACTTGTAGAAGGAAAAGCAAGGCGTGGTGCCTCTGGTTGTAAAAGTCGTGTTTTGAAGCAACTAGACGAAGTTGTTGGATGGGATGACCTACGAGTGGCTATAGAGGCCACTAATGAAGAGATCATAATAGAACGAAGAATGATGGATAGGTTGCCCATCAATAAGTGGAGTGATGCAGACGGTCATGTTCTATTGATTGGTGATGCTGCACATGCTCAGTATACTGGACCAGGGCAAGGAGCAAGAACTGCATTTGAGGATGCTCATCAGCTTTCTCTTCTCCTTGAGGTTGCAAATGCATCATATTTATCCACAGAAGGCATTGAAGAAGCTGTTGGAAGGTTTGAAGAGTTGAGAATCCCTCGGATGAGGAAGATGCAAGAGTATGCAGCCTATCAAACCATGATCCCAGAATTCCAACCTGACTGGACAAAGAATTTAACAACCGAAGAGAGAGATAGAATGAATCAGGAGTACATAAAGTGGGTTGGGGCATACCCTGATAAACAACTAGGGTGA___TCCCGAGTCTTTCTACTACAAGTAGACAACTAGAAAAAGTCTTGCTTAATTCCAAATGGTCCCTGGGATATTTTAATCTAAGAAGTAACCATTAGCAGATCATCTTAAGGAATACAGTTCGATGAAAGGGAATCCTTAGGTGCCTAATTATGTTCCCTACATTGATTATTTTCTATTTTTTTATTAATGGATGTAGGAGGGA

Fln Alignment:

Contig26175___MDGLEGSISNAELEVAPQMDIVIXXXXXXXXXXXXXLQERHIQAHVFESHPVLSAATATVIGIGSNGITAMEGIKSGLTTAIAEAGAYTIKFRYKSYINGQEEISRTTRRSSGDWITVRWESVQRILASFLHKSSICFSHKLIGYKPFKGGVEAYFRYTADNIEKIKMIPCKLLIGADGIWSAVRKQMVGDPPRYLKLMNWNALVYDPDLKLFDDVERGDIIYRSDDNGRTRNIIANTGDYTMWLLRKRDETGDLANSLVEGKARRGASGCKSRVLKQLDEVVGWDDLRVXXXXXXXXXXXERRMMDRLPINKWSDADGHVLLIGDAAHAQYTGPGQGARTAFEDAHQLSLLLEVANASYLSTEGIEEAVGRFEELRIPRMRKMQEYAAYQTMIPEFQPDWTKNLTTEERDRMNQEYIKWVGAYPDKQLG
B8LKB0_______________MDGVEGSICNAQLEITPQMDIVIAGGGLAGLALVLGLQERNIQAHVFESHPVLSAATATIIGIGSNGITALEGIKPGLTTAIAQAGAYTTKFRYIASINGKEEQSRTTRMLPDQWITVRWESVQRILASFLHKSSIYFSHKLIAYKPFKGGVEAYFRYTADNLEKIKMIPCKLLIGADGIWSVVRKQMVGDPPRHLNLINWNALVYDPDLKLFDDVERGDIIYRSDNNGRTRSIIANTGDYTMWLLRKKDETGELASSLVGGKATLGAPGCKSRALKQLDGVVGWDNLRVAIEATSEEIITERKMMDRLPINKWSDADGHVLLIGDAAHAQYTGPGQGARTAFEDAHQLSLLLEVANTSSLSTESIDEAVGRFEELRIPRMKKMQEYAAYQTMIPEFQPDWTKNLTTEERERMNQEYRKWVEAYPDKQQG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
316	33		66		1.0
677		88		11	0.923564
693	25		75		1.0
752		50		25	0.995533
769	16	83			0.994512
773			83	16	0.994512
802	66	33			1.0
933	25	75			0.996473
934		75		25	0.996473
935	75		25		0.996473
1042	60		20		0.99255
1051	25	75			0.996473
1178	10		90		0.90298
1179		10		90	0.90298
1180	10			90	0.90298
1181		90		10	0.90298
1184	66		33		1.0
1195		33		66	1.0
1216	33		66		1.0
1219			66	33	1.0
1267		42		57	1.0
1272	42		57		1.0
1287			57	42	1.0
1345	57		42		1.0
1350	57		42		1.0
1402	66	33			1.0
1444		16		83	0.994512
1445		16		83	0.994512
1446	20		80		0.995493
1448		25	75		0.996473
1449		25	75		0.996473
1450		25		75	0.996473
1451		25	75		0.996473
1452	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain