SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26169

Length: 1658 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26169 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	(rap annotation release2) glycosyl transferase	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 90 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 8, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 438 - 567

Fln protein: MAPPATRNAYATMMYMGTPRDYEFYVAVRVMFRSLRRLNVDADLVVIASRDVPSSWIKILNRDGAKVVTVDNLDNPYKDQPNFDKRFALTLNKLYAWDLVQYERVVMLDADNLFLQKTDELFQCGQFCAAFINPCIFHTGLFVLQPSKQVFNDMLKQLANGQKNQDGLDQGFLTGYFDDLLDKPMFHPAVNGTAQNGLYRLPLGYQMDASYYYLKLKWNVPCGPNSVITFPGASWLKPWYWWSWPVLPLGLSWHQQRLNTIGYDDEIPIFIAEVIIYLVIMIMMKVRGFTLSMKSYFYRGPEREYWRHPVVMKALVTSYLLAGYLVPCLLIPKTIHPLLGWGLYLLGSLSLVYSTIRSYPISVLAALTPWMCICGTLAVMANPHYPNGVVRALSVCAYAAVGAPLAWTGIVRVVRSLDSSIDRESQSPLLDQITKAC*

Protein Length: 439

Fln nts: CGCCCGGTCCAAGGTTCGAATCCCGGAATCGACTGTTATTTATAGTATTATGTGTGATAACGTTAATTCATACCTGGGACACTGTGATTGCGGAGATGGCACCACCCGCGACCAGAAACGCCTATGCGACAATGATGTACATGGGGACGCCAAGAGACTACGAGTTTTATGTGGCTGTGCGTGTAATGTTTCGGTCCCTTCGAAGGCTCAATGTGGACGCAGACCTTGTTGTAATTGCATCCAGAGATGTTCCATCTTCATGGATCAAGATACTAAATAGAGATGGAGCCAAGGTAGTCACAGTAGACAACCTGGACAATCCATACAAAGACCAACCCAATTTCGACAAGCGTTTTGCTCTTACACTCAACAAACTATACGCATGGGATCTCGTCCAGTATGAGCGTGTTGTCATGCTCGATGCAGACAATCTGTTTCTGCAGAAAACCGATGAGCTCTTCCAGTGTGGCCAGTTCTGTGCCGCATTCATTAACCCCTGCATTTTTCACACCGGGCTCTTCGTTTTACAGCCATCGAAGCAGGTATTCAATGATATGTTGAAACAGCTTGCCAACGGCCAAAAAAACCAGGATGGTTTGGATCAAGGCTTTCTAACGGGGTATTTTGACGATTTGCTGGACAAACCCATGTTCCATCCAGCAGTAAATGGAACCGCACAGAATGGGCTTTATCGCCTTCCGCTGGGATACCAGATGGACGCATCCTATTACTATTTGAAGCTGAAATGGAACGTACCATGCGGACCCAACAGCGTCATCACATTCCCAGGGGCTTCTTGGCTTAAACCCTGGTACTGGTGGTCATGGCCTGTATTGCCACTGGGCCTCTCTTGGCACCAGCAGCGGTTAAATACAATAGGATATGATGATGAAATACCAATTTTCATAGCAGAGGTGATTATATACCTGGTAATTATGATCATGATGAAAGTCAGGGGATTCACTCTCAGCATGAAAAGCTACTTTTACAGAGGCCCTGAGAGGGAATACTGGAGGCATCCTGTGGTGATGAAAGCACTGGTAACATCATACTTGCTGGCAGGTTATCTGGTTCCCTGTCTGTTGATACCCAAAACAATACATCCATTATTGGGATGGGGCCTTTATCTGCTGGGTTCTTTGTCTCTGGTGTACAGTACCATCAGATCATATCCAATTTCAGTTCTGGCAGCTTTAACGCCATGGATGTGTATATGCGGTACGCTTGCAGTGATGGCTAATCCCCATTATCCTAATGGGGTTGTCAGGGCCTTATCAGTGTGTGCTTATGCAGCTGTGGGAGCTCCATTAGCTTGGACAGGCATTGTCAGAGTGGTGAGGTCTCTGGATTCCTCCATTGACAGAGAATCCCAATCGCCACTCTTGGATCAGATTACAAAAGCCTGTTAA___TAATATATTCGTTCAGCATCAATTGGGTTCATCCGTTCTCATTCTTTCGAGGCTTCTACTGTATCCATTTTCTTCATAAATGGATGGTGGATGGATGCATGTATGTATGTTACAGGTTTCAAAATTCTCGGTCAGCGATTGAGCGCTCCTTTAAAATTAACCTTTTTAAAAGGTTAATGTGGCTTTAATTTAAGTAGGTGTGTATACGGTTTTATTTAAAAATTTAATTGGTTTATTTTATTCGGTCAA

Fln Alignment:

Contig26169___TRNAYATMMYMGTPRDYEFYVAVRVMFRSLRRLNVDADLVVIASRDVPSSWIKILNRDGAKVVTVDNLDNPYKDQPNFDKRFALTLNKLYAWDLVQYERVVMLDADNLFLQKTDELFQCGQFCAAFINPCIFHTGLFVLQPSKQVFNDMLKQLANGQKNQDGLDQGFLTGYFDDLLDKPMFHP-----AVNGTAQNGLYRLPLGYQMDASYYYLKLKWNVPCGPNSVITFPGASWLKPWYWW-SWPVLPLGLSWHQQRL-------NTIGYDDEIPIFIAEVIIYLVIMIMM
B8LLU5_______________TLEAYATLLYGD-----EFLLGVRVLGKSIRDTGTTRDMVALVSDGVSPYAVQLLQADGWIVEHIGLLANPNQKRP---KRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRSIDDLFQCRKFCANLKHSERLNSGVMVVEPSESVFKDMMAKVTT-LPSYTGGDQGFLNSYYGDFPNARLFEPNLSADELKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYT-LGPLKPWDWWTAWLLKPVDL-WQGFRVKLEGSLPGTEGENDPHKQLIVRILFVLPLLVAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain