SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26166

Length: 2266 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene26166
CGTCGTGACCTTGGCTGTCATGGGGACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATCATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGTTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGATTTATAGTCGAGGTTTTCCTTTAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTTGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATCCTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCATGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACAAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAGAAAGGAAGAGTTGAAGTTTCTCTTTGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGTTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCGGAGGGCAGCAAGATGGAGGAGGTGGATTAATTTAGTGTTTTA

Ace file of the UniGene sp_v2.0_unigene26166 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 82 n=2 Tax=Geminigeraceae RepID=Q9SEA7_GUITH	-	-	65%
FL-Next	sp=Heat shock cognate protein 80; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	93%
Blast2go	heat shock protein	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P36181

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 645 - 699

Fln protein: MAEAGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIxxxFIVEVFL*WSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATKEGLKLEESEDEKKRKEELKFLFDILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD*

Protein Length: 646

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATC_-_ATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGTTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTxxxxxxxxxTTTATAGTCGAGGTTTTCCTTTAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTTGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATCCTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCATGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACAAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAGAAAGGAAGAGTTGAAGTTTCTCTTTGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGTTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCGGAGGGCAGCAAGATGGAGGAGGTGGATTAA___TTTAGTGTTTTA

Fln Alignment:

Contig26166___EVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRRFIVEVFL*WSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXLF--------DILGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEE-AADAEGSKMEEVD
P36181_______________DVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGENLGRGTKMVLYLKEDQLEYLEERRLKDLIKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESG--DADADMPALEDPEADAEGSKMEEVD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1662		25	75		0.996473
1986	16		83		0.994512
1987	83		16		0.994512
2022		14	85		0.993533
2024	87			12	0.992554
2025	87			12	0.992554
2246	7	76		15	0.999983
2247		76	23		1.0
2248	15	84			0.999986
2249		76	15	7	0.999983
2253	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain