SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26149

Length: 1699 nt

Origin of reads: Inia v1 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26149

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG5224 CCAAT-binding factor, subunit B	-	-	6.0e-05	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	nuclear transcription factor y subunit a-	-	-	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQJ9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 348 - 369

Fln protein: FWVILIANVN*EVVASGKRCFPVWILINVMLYLCLISMSCFQIHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRKVLTSMFSLLSIYLPCFVQSRACNRNTISGICTLL*SLNQHESSYNMRFIAANIVFILLLLIFYGNLLNSIGGWLYMDTTILFSIFQLCFVIVLLVLFVAL*PYLHESRHLHVMKRARGCGGRFLNTKKLEDMKANVDNGKTPEGHTAQAGSSSGSEVLQSENGNGNSTQEVHGACGMSGSEVTSIAQSSENGTSYQYSHTNGTYLNHYQHPHFHISAFHPLSSGGEEGSSAKGGSIISGGSQQRVVVIQ*

Protein Length: 349

Fln nts: TTTTGGGTCATTTTGATTGCTAATGTCAACTAAGAAGTTGTAGCAAGTGGGAAGAGATGCTTTCCTGTTTGGATCTTGATAAATGTAATGCTTTATTTATGCCTAATATCAATGAGTTGTTTTCAGATTCATCCCAACATGCTTGGGGTGCAACAGGCTCGCATGCCCTTGCCATTGGATATGACAGAAGAAGAACCAGTATATGTTAATGCTAAACAATATCATGGGATTCTCAGGCGCAGACAACTGCGAGCGAAGGCAGAGTCTGAGAATAAACTGATTAAGACCAGGAAGGTACTGACATCTATGTTTTCATTGCTATCTATTTATTTGCCTTGTTTTGTTCAAAGCAGGGCATGTAATAGGAATACAATTTCTGGAATATGTACCTTATTATAGAGCCTGAACCAACATGAAAGCAGCTATAACATGCGTTTCATTGCTGCGAACATAGTATTTATTCTTTTGCTCTTAATCTTTTATGGTAATTTATTGAATTCCATTGGTGGTTGGTTATATATGGATACGACTATTTTATTTTCAATTTTTCAATTGTGTTTTGTAATTGTCTTACTCGTGTTATTTGTTGCTTTATAGCCATATCTACATGAATCTCGACATCTTCATGTCATGAAGAGAGCGAGAGGGTGTGGTGGTCGCTTTCTGAACACCAAAAAGTTAGAGGACATGAAAGCAAATGTGGATAATGGAAAGACACCAGAAGGACATACTGCGCAGGCTGGGAGTTCTTCAGGTTCTGAAGTTCTGCAATCTGAAAATGGAAATGGAAATTCTACCCAGGAGGTACATGGTGCTTGTGGGATGTCAGGCTCAGAAGTTACTAGCATTGCACAGTCATCTGAAAATGGTACAAGTTATCAATATTCTCATACTAATGGAACATATCTTAATCACTATCAACATCCACATTTCCATATATCAGCATTTCACCCACTCTCAAGTGGAGGTGAGGAAGGCAGCAGTGCAAAAGGTGGGAGCATAATATCTGGTGGATCACAACAACGAGTTGTTGTGATCCAGTGA___AGTGTGAAATAAGATGTTAGTGGTGAGAATCTCACGTGCTTGTTTCTCCGTGTTACGTTGACTATAAAGATAGGTCTCAATGAGTGCGAAGATCATAAAATGAAACAGATTTTATGAAGTCTTTGCAATTTTATGGTTCAGAGGCCATTATCAGTAAAACAGGTAACCCGTGATGGTTTATTTTTGAATGGGTTGCAGTTTGCACAAACACGGAGCTGCCTTGCATTTGAGATTCTTCTTCTCGTGGAAGCAGCCAGATGGGAGAGTCTGTTAGTTTGTGGCATGTTCTGATGTCACAGATTAACTTTTCAATTAGGTTTGGACAAGAAATTGACCTAACCTAACCGATCTGGTATTTCCTATGGCAATTCATCCTTGGCTTAGTTTTAAATCAGGTCATGATAATGTTTGAAGTTGTTTCGTAAGTAAATGGCATTTGACATGTTTTGATAGGCTGGAAGGTTTGTATGAAAGCCTAACGAGTGTTGTAGACATTTAACACTCTAATGGTAGGACCAATCGACCTTTCAATAAACCTATAGCGTGCTGCTGAAAACTCGAGACTATTTTATGTACTTCATCTTTATTGTGTGTGCATGTTCAAACTTGGAAACATTGTGGACAGTTTTAGTGTGAAGTTGTATGTTCATGTCTA

Fln Alignment:

Contig26149___IHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRK
C0PQJ9_______________IHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1548	57	42			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain