SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26146

Length: 1257 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26146

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana] dbj\|BAA97389.1\| acid phosphatase [Arabidopsis thaliana] dbj\|BAD95053.1\| acid phosphatase [Arabidopsis thaliana] gb\|ABD19661.1\| At5g51260 [Arabidopsis thaliana] gb\|AED96059.1\| HAD supe	-	-	8.00001e-41	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	acid phosphatase 1	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADB9

Fln msg: Separated hits, possible frame ERROR between 754 and 885, your sequence is longer than subject: 355 - 268

Fln protein: MASLLQINHHHLNLLCALQPTTAKHSPRISNPSFSSMVRLPAHSLISHQHHNIHSTKPKLPKAFNVCQSTAQEVTWELNQSPEDYQVNCEAWRFGVETNTLRSWTVVPPECVEYVKNYMAGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDLDETLISTLPYFAAHQFGGEVIDVDDIIKTWLNRAAAPALVASHRLYAHLLELGFKIFLLTGRPHNQGNVTERNLVRAGYHSWESLLFR*xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCCRQPEDYEKSAVVYKSEKRLKIEQDGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA*

Protein Length: 356

Fln nts: ATCTTCTTCC_-_ATGGCTTCGCTTCTGCAAATCAACCACCACCATCTCAACCTCCTCTGCGCTCTACAACCCACCACAGCCAAGCACAGCCCCAGAATCTCCAATCCCTCTTTCTCTTCCATGGTTCGGCTTCCCGCGCATTCCCTCATTAGTCACCAACATCACAATATCCACTCCACCAAACCCAAACTTCCAAAAGCCTTCAATGTCTGCCAATCCACAGCCCAGGAGGTCACATGGGAGCTCAATCAATCCCCTGAAGACTACCAGGTTAACTGCGAAGCCTGGAGGTTCGGTGTAGAAACAAATACCCTGCGCTCCTGGACTGTGGTTCCTCCTGAATGCGTGGAATACGTGAAAAACTATATGGCCGGCAGTGGAAGCCAATATTTGAGGGATTTAGACATGGTAGCCAACGAATCCATAGCTTATGTTAACTCTCTGAAACTCTCAGGCGATGGGAAGGACGCCTGGGTTTTCGACTTGGACGAAACCCTCATCTCAACTCTGCCCTATTTCGCAGCCCACCAGTTCGGCGGAGAGGTAATTGATGTGGATGATATCATTAAGACATGGTTAAATCGGGCAGCGGCCCCGGCATTGGTTGCCAGTCATAGATTATACGCCCATCTGCTTGAGTTGGGTTTCAAGATCTTCTTGTTAACTGGCAGGCCACATAACCAGGGGAATGTCACTGAGAGGAATCTGGTCCGAGCTGGTTATCATTCATGGGAGTCGCTTTTATTCAGGTAACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGTGTTGCAGGCAGCCGGAAGATTATGAGAAGAGCGCTGTGGTTTATAAGTCTGAGAAGAGATTGAAGATTGAGCAAGATGGGTTCAGAATCCGAGGGAACTCTGGTGATCAGTGGAGCGATTTGACTGGATACTCTGTTGGGGACAGGACATTCAAGCTGCCTAATCCCATGTATTACGTTGCCTGA___CTTAATGCTTTGTTTTGTTTGTTTGCTTGGGGTAACGCATTGCGAAATGTGCAAACCCATTTTTTCCCCTTGTTCCGGGATCCATAAAATGGCCCATTCATCGTTAGAAGCATGCTTTGTTATCAAATCCAATTATTGGGTAGATGTTTTACCCAAAATAAAACTCTAACATTAGATGCATATT

Fln Alignment:

Contig26146___AHSLISHQHHNIHSTKPKLPKAFNVCQSTAQEVTWELNQSPEDYQVNCEAWRFGVETNTLRSWTVVPPECVEYVKNYMAGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDLDETLISTLPYFAAHQFGGEVIDVDDIIKTWLNRAAAPALVASHRLYAHLLELGFKIFLLTGRPHNQGNVTERNLVRAGYHSWESLLFR*PxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCCRQPEDYEKSAVVYKSEKRLKIEQDGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA
D5ADB9_______________AHTPITHQHPHIHSTTRKIPKVFNVYQSTVHEETSELKQSPEDYQVNCEAWRFGVETNTLRSWNVVPPECVEYVKNYMIGSGSQYVRDSNMVANESIAYVNSLQLSGDGKDAWVFDVDETLISTLPYFAAHQFGGEVIAEDDFNVKWLDRAVAPALPASHKLYARLLELGFKIFLLTGRRHCQRNVTERNLVRAGYHSWEALFLREPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLFLREPEDRAKSAVVYKSERRLKIEQNGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
547	33			66	0.997452
549	66	33			0.997452
554			66	33	0.997452
555	33		33	33	0.997753
557		33		66	0.997452
558		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain