SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26024

Length: 572 nt

UniGene Fasta

>sp_v2.0_unigene26024
TAAGGATCTTGAAGATGGAAAGAATATTCTTACTTCATGGTCCGAGGCAAAACGCTTATTGAAGCCAGACCAGAGGTATGCTAGGATGCCACGAAGAGAGCGAGAATTATGGTGGCGCAGGTATGCTGATGATGTACAACGGAGGGTAAAGGTAACTGGATCAGAAAGGAACGAAGATAAACCAAATGTGGATGATAGTGGTAAAAGATCACCAGGAGTGAGGAAATAGCAAAGTCGTAGGTAATTTTGTAGAGGCATGGTTTCAGTTCCAATTTACTCCACGTAATAGAGTCGTAGTGTAATAGAGGCGTAGTGTGCAGTGTGCTCCATTGTAGCTTCAACATGTGCTTGGACAGAGATTGCAATAGCAAACCATTATCGTGTCATTGAGATTTCAGTTACTGTCAGTAAGTATTTTATAAACTTTTAAGTTTTAGAAGCAGATGCTTCTGGTTCGATGTAGTCACAGGTTAGGAGTCAAGACCCAGTACTTTGGATCATGTTTGGACTAGATAGTTATGTTTGGACGAGATAGTTATGAATATTCATGATATTTTGGACATCTATTGATA

Ace file of the UniGene sp_v2.0_unigene26024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription elongation regulator 1 [Arabidopsis thaliana] dbj\|BAB01298.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76298.1\| transcription elongation regulator 1 [Arabidopsis thaliana]	-	-	5.0e-10	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	46%
Blast2go	transcription elongation regulator 1-like	-	-	1.20929e-14	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	1.20929e-14	69%
Blast2go	RNA polymerase binding	GO:0070063	Molecular Function	1.20929e-14	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9HY22

Fln msg: your sequence is shorter than subject: 76 - 175

Fln protein: KDLEDGKNILTSWSEAKRLLKPDQRYARMPRRERELWWRRYADDVQRRVKVTGSERNEDKPNVDDSGKRSPGVRK*

Protein Length: 77

Fln nts: TAAGGATCTTGAAGATGGAAAGAATATTCTTACTTCATGGTCCGAGGCAAAACGCTTATTGAAGCCAGACCAGAGGTATGCTAGGATGCCACGAAGAGAGCGAGAATTATGGTGGCGCAGGTATGCTGATGATGTACAACGGAGGGTAAAGGTAACTGGATCAGAAAGGAACGAAGATAAACCAAATGTGGATGATAGTGGTAAAAGATCACCAGGAGTGAGGAAATAG___CAAAGTCGTAGGTAATTTTGTAGAGGCATGGTTTCAGTTCCAATTTACTCCACGTAATAGAGTCGTAGTGTAATAGAGGCGTAGTGTGCAGTGTGCTCCATTGTAGCTTCAACATGTGCTTGGACAGAGATTGCAATAGCAAACCATTATCGTGTCATTGAGATTTCAGTTACTGTCAGTAAGTATTTTATAAACTTTTAAGTTTTAGAAGCAGATGCTTCTGGTTCGATGTAGTCACAGGTTAGGAGTCAAGACCCAGTACTTTGGATCATGTTTGGACTAGATAGTTATGTTTGGACGAGATAGTTATGAATATTCATGATATTTTGGACATCTATTGATA

Fln Alignment:

Contig26024___EDGKNILTSWSEAKRLLKPDQRYARMPRRERELWWRRYADDVQRRVKV---TGSERNEDKPN--VDDSGKRSPGVRK*QSRR
B9HY22_______________DDGKTVLDSWSTAKRLIKPDPRYNKMPRKERETLWRRYAEEMLRKQKFEPDPKEDKHTDSKNRSANDSGRYHSGSRRTNDRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain