SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26012

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene26012
ACAGTTGGAAAGACCCTTGTTACACGGACTCAGGGTACTAAGATTGCGTCTGAAGGGCTTAAGCATCGTGTGTTTGAGGTTTCACTAGCTGATCTTCAGAATGATGAAGCTGCAGAGGATGTTCAGGGAAGGAATGTCCTCACTAATTTCTGGGGAATGGATTTCACCACTGATAAGCTTAGATCCCTGGTCCGCAAGTGGCAGACTTTGATTGAAGCTCACGTGGATGTTAAGACAACAGATAACTATGGTTTGCGTATGTTCTGCATTGGATTCACAAAGAGGAGGCCCAATCAAGTCAAGCGAACATGCTATGCCCAAACAAGTCAAATAAGACAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTACTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCTGAGGTGATTGGGAAGGAGATTGAAAAAGCTACTTCCTCAATTTATCCTCTGAAAGTTAAAATTTTGAAGGCACCGAAATTTGACCTTGGAAAGCTTATGGAGGTACATGGAGATTATTCTGAGGATGTTGGAGTCAAGGTTGATAGGCCAG

Ace file of the UniGene sp_v2.0_unigene26012 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=40S ribosomal protein S3a emb\|CAD56219.1\| ribosomal protein S3a [Cicer arietinum]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	40s ribosomal protein s3a-like	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Glycoside hydrolase, family 43	IPR006710	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV8

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 190 - 245

Fln protein: TVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEAAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVREATSCDLKELVAKFIPEVIGKEIEKATSSIYPLKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRP

Protein Length: 191

Fln nts: ACAGTTGGAAAGACCCTTGTTACACGGACTCAGGGTACTAAGATTGCGTCTGAAGGGCTTAAGCATCGTGTGTTTGAGGTTTCACTAGCTGATCTTCAGAATGATGAAGCTGCAGAGGATGTTCAGGGAAGGAATGTCCTCACTAATTTCTGGGGAATGGATTTCACCACTGATAAGCTTAGATCCCTGGTCCGCAAGTGGCAGACTTTGATTGAAGCTCACGTGGATGTTAAGACAACAGATAACTATGGTTTGCGTATGTTCTGCATTGGATTCACAAAGAGGAGGCCCAATCAAGTCAAGCGAACATGCTATGCCCAAACAAGTCAAATAAGACAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTACTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCTGAGGTGATTGGGAAGGAGATTGAAAAAGCTACTTCCTCAATTTATCCTCTGAAAGTTAAAATTTTGAAGGCACCGAAATTTGACCTTGGAAAGCTTATGGAGGTACATGGAGATTATTCTGAGGATGTTGGAGTCAAGGTTGATAGGCCAG

Fln Alignment:

Contig26012___TVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDE---------AAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVREATSCDLKELVAKFIPEVIGKEIEKATSSIYPL------KVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR
A9NNV8_______________TVGKTLVTRTQGTKIASEGLKHRVFELSLADLQNDEDQAFRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMTEIMIREASSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain