SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25935

Length: 497 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene25935
AATGTGATTATTTGAATCTCGGTATTTCATTGTACAGACATGTGGAAGGGCTTTGCAGAAGCAGATTCCAGGTTTGCAGCATTGGCTCCTTACATGGGTGGTGCTCGTTTGCTCAGACAGGATCCTCTCGAGTGCCTTTTTCAGTTTATTTGTTCTTCCAATAATAATATTCAGAGGATTACACAGATGGTGGAGTTTTTGTCCGGATTTGGACCTTGTTTGGGAACTGTTGAGGGAATTGAGTTTCATGCTTTTCCTTCATTGGAAGAGTTGTCTTCGTTCGATGAAGGGCAGCTTCGGAAAGCAGGATTCGGTTACAGGGGTTGCGTTTCGGGCCGTCCCTGTTTCAGAAACTTCTAGACGTTTCGGTGTTTCGTGCAACTTAGCAAATAATCTAATAAATTATGATGGAACCAGGTGAAAGGGGTTAAATGCCAAGTGCTTTCCAAAAATGAATTGCGAACCATGCCAAGGTGTTATCAATATGTGAAATAAAC

Ace file of the UniGene sp_v2.0_unigene25935

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	8-oxoguanine DNA glycosylase [Populus nigra]	-	-	2.0e-32	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	n-glycosylase dna lyase	-	-	1.84048e-38	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-formamidopyrimidine glycosylase.	EC:3.2.2.23	-	1.84048e-38	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	1.84048e-38	76%
Blast2go	oxidized purine base lesion DNA N-glycosylase activity	GO:0008534	Molecular Function	1.84048e-38	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	8-oxoguanine DNA glycosylase, N-terminal	IPR012904	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABW0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 120 - 255

Fln protein: NVII*ISVFHCTDMWKGFAEADSRFAALAPYMGGARLLRQDPLECLFQFICSSNNNIQRITQMVEFLSGFGPCLGTVEGIEFHAFPSLEELSSFDEGQLRKAGFGYRGCVSGRPCFRNF*

Protein Length: 121

Fln nts: AATGTGATTATTTGAATCTCGGTATTTCATTGTACAGACATGTGGAAGGGCTTTGCAGAAGCAGATTCCAGGTTTGCAGCATTGGCTCCTTACATGGGTGGTGCTCGTTTGCTCAGACAGGATCCTCTCGAGTGCCTTTTTCAGTTTATTTGTTCTTCCAATAATAATATTCAGAGGATTACACAGATGGTGGAGTTTTTGTCCGGATTTGGACCTTGTTTGGGAACTGTTGAGGGAATTGAGTTTCATGCTTTTCCTTCATTGGAAGAGTTGTCTTCGTTCGATGAAGGGCAGCTTCGGAAAGCAGGATTCGGTTACAGGGGTTGCGTTTCGGGCCGTCCCTGTTTCAGAAACTTCTAG___ACGTTTCGGTGTTTCGTGCAACTTAGCAAATAATCTAATAAATTATGATGGAACCAGGTGAAAGGGGTTAAATGCCAAGTGCTTTCCAAAAATGAATTGCGAACCATGCCAAGGTGTTATCAATATGTGAAATAAAC

Fln Alignment:

Contig25935___TDMWKGFAEADSRFAALAPYMGGARLLRQDPLECLFQFICSSNNNIQRITQM----VEFLSGFGPCLG
D5ABW0_______________TDMWKGFAEADSRFAALAPYMGGARLLRQDPVECLFQFICSSNNNIQRITQMVGVFVRIWTLFGDCRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain