SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25933

Length: 1111 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25933 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] gb\|AAL60011.1\| putative sun protein fmu [Arabidopsis thaliana] gb\|AAM51397.1\| putative sun protein fmu [Arabidopsis thaliana] dbj\|BAE98415.1\| putative sun (fmu) protein [Arabidopsis th	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	ribosomal rna small subunit methyltransferase b	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	NusB/RsmB/TIM44	IPR006027	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	IPR018314	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL05

Fln msg: Overlapping hits, possible frame ERROR between 731 and 715, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 22 aas, your sequence is shorter than subject: 370 - 558

Fln protein: IWRHA*LNKNMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAENMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMVRRWMTYLGQEGTIQLMEWNNSPPSFSLRANSGRGVSRNDLVLLLNKLKVPHELSPHMTEFVRLSMGLQHVIQAGLLKEGMCAVQDEAAGLVVSVVDPQPGETIIDCCAAPGGKHCSWHHACRVKEHNAIDVNQARLRLxxxxxxxMQALDSVVNAYQDDIRSFAAGASIRADKVLLDAPCSGLGVLCKKPDLRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENNERVESFLTRHPEFIVEAVHKYVPNEFISVGGIH

Protein Length: 371

Fln nts: GCATATGGAGGCATGCCTAGCTTAACAAAAACATGGAGCCTCTTCTTCAGCAGATACTTCGAATTGGTGTCTATGAAATTGTTAAGCTAGGCATGCCTCCATATGCTGTTGTCAACGAGAATGTGACACTTGCAAGGGCGGCGTTGAGGGCAGGTGCTGAAAACATGGTTAATGGCATTCTCCGAAGAGTAGCTTCTGATAGGGAAAAGGATATGCTTCCCCTACCAAAAGTGGAAGGTGACGATCGTTCAAAGGCACGTGCTCTTTCTGTAAAGTACTCACATCCAGTTTGGATGGTAAGGCGGTGGATGACTTATTTAGGACAAGAAGGAACAATTCAGTTGATGGAATGGAATAACAGTCCACCAAGCTTCAGCCTGAGAGCCAACAGTGGCAGAGGTGTATCAAGAAATGATCTAGTCCTTTTGTTAAACAAGTTAAAGGTCCCCCATGAGTTATCTCCACACATGACAGAGTTTGTCCGTCTCTCAATGGGATTGCAGCATGTTATCCAAGCTGGATTGCTGAAAGAAGGGATGTGTGCTGTACAGGATGAGGCTGCAGGTTTGGTTGTTTCTGTTGTGGATCCTCAACCAGGAGAAACTATTATAGATTGTTGTGCTGCACCTGGGGGAAAGCATTGTTCATGGCATCACGCCTGCAGGGTCAAGGAACATAATGCAATTGATGTAAACCAAGCTCGATTGCGATTGxxxxxxxxxxxxxxxxxxxxxATGCAAGCTTTAGACAGTGTTGTTAATGCCTATCAGGATGATATCCGTAGCTTTGCTGCTGGAGCATCTATTAGGGCTGATAAAGTGTTGCTTGATGCTCCGTGTAGTGGTCTCGGTGTCCTGTGTAAGAAACCAGATTTGCGTTGGAAGAGAACACTAAAGGATTTGGAGCAGCTAATATTACTGCAAGATGAGCTCCTAGATGCAGCTTCATTGTTGGTGAAGCCTGGCGGCATTTTAGTCTACAGTACTTGCTCAGTAGATCCAGGAGAAAACAACGAACGTGTTGAATCATTTCTTACTAGACATCCAGAATTCATTGTTGAAGCAGTGCACAAATATGTTCCAAATGAGTTCATCTCTGTAGGAGGGATACATT

Fln Alignment:

Contig25933___KNMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAENMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMVRRWMTYLGQEGTIQLMEWNNSPPSFSLRANSGRGVSRXXXXXXXXXXXVPHELSPHMTEFVRLSMGLQHVIQAGLLKEGMCAVQDEAAGLVVSVVDPQPGETIIDCCAAPGGKHCSWHHACRVKEHN---AIDVNQARLRLxxxxxxMQALDSVVNAYQDDIRSFAAGASIRADKVLLDAPCSGLGVLCKKPDLRWKRTXXXXXXXXXXXXXXXDAASLLVKPGGILVYSTCSVDPGENNERVESFLTRHPEFIVEAVHKYVPNEFISVGGIH
B8LL05_______________KDMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAGNMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMIRRWMTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSRDDLVLLLKKLNVQHELSPHMTEFVRLSTGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGK--ALFMASRLQGQGSVIAIDVNQGRLRVxxxxxxVQALEGVVNACQDDIRSFAVGASIRADKVLLDAPCSGLGVLCKKPDMRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENKERVESFLTRHPEFIVEAVHKYVPNEFISEEGFY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain